Experiment: Fumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS26120 and QEN71_RS26125 are separated by 593 nucleotides QEN71_RS26125 and QEN71_RS26130 are separated by 63 nucleotides
QEN71_RS26120: QEN71_RS26120 - aspartate-alanine antiporter, at 5,825,092 to 5,826,780
_RS26120
QEN71_RS26125: QEN71_RS26125 - LysR family transcriptional regulator, at 5,827,374 to 5,828,363
_RS26125
QEN71_RS26130: QEN71_RS26130 - 2-hydroxyacid dehydrogenase, at 5,828,427 to 5,829,434
_RS26130
Position (kb) 5827
5828
5829 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5826.606 kb on + strand, within QEN71_RS26120 at 5826.606 kb on + strand, within QEN71_RS26120 at 5826.606 kb on + strand, within QEN71_RS26120 at 5826.606 kb on + strand, within QEN71_RS26120 at 5826.607 kb on - strand, within QEN71_RS26120 at 5826.607 kb on - strand, within QEN71_RS26120 at 5826.607 kb on - strand, within QEN71_RS26120 at 5826.607 kb on - strand, within QEN71_RS26120 at 5826.607 kb on - strand, within QEN71_RS26120 at 5826.679 kb on + strand at 5826.679 kb on + strand at 5826.679 kb on + strand at 5826.679 kb on + strand at 5826.679 kb on + strand at 5826.679 kb on + strand at 5826.679 kb on + strand at 5826.680 kb on - strand at 5826.680 kb on - strand at 5826.745 kb on + strand at 5826.746 kb on - strand at 5826.762 kb on + strand at 5826.762 kb on + strand at 5826.763 kb on - strand at 5826.811 kb on + strand at 5826.812 kb on - strand at 5826.812 kb on - strand at 5826.857 kb on + strand at 5826.920 kb on + strand at 5826.921 kb on - strand at 5826.976 kb on + strand at 5826.976 kb on + strand at 5826.976 kb on + strand at 5827.108 kb on + strand at 5827.151 kb on - strand at 5827.192 kb on + strand at 5827.193 kb on - strand at 5827.220 kb on + strand at 5827.269 kb on + strand at 5827.269 kb on + strand at 5827.269 kb on + strand at 5827.269 kb on + strand at 5827.269 kb on + strand at 5827.269 kb on + strand at 5827.269 kb on + strand at 5827.270 kb on - strand at 5827.386 kb on + strand at 5827.386 kb on + strand at 5827.386 kb on + strand at 5827.386 kb on + strand at 5827.386 kb on + strand at 5827.386 kb on + strand at 5827.387 kb on - strand at 5827.387 kb on - strand at 5827.387 kb on - strand at 5827.566 kb on + strand, within QEN71_RS26125 at 5827.566 kb on + strand, within QEN71_RS26125 at 5827.566 kb on + strand, within QEN71_RS26125 at 5827.566 kb on + strand, within QEN71_RS26125 at 5827.567 kb on - strand, within QEN71_RS26125 at 5827.789 kb on - strand, within QEN71_RS26125 at 5827.905 kb on + strand, within QEN71_RS26125 at 5827.906 kb on - strand, within QEN71_RS26125 at 5827.906 kb on - strand, within QEN71_RS26125 at 5827.906 kb on - strand, within QEN71_RS26125 at 5827.906 kb on - strand, within QEN71_RS26125 at 5828.053 kb on - strand, within QEN71_RS26125 at 5828.053 kb on - strand, within QEN71_RS26125 at 5828.053 kb on - strand, within QEN71_RS26125 at 5828.053 kb on - strand, within QEN71_RS26125 at 5828.178 kb on + strand, within QEN71_RS26125 at 5828.178 kb on + strand, within QEN71_RS26125 at 5828.178 kb on + strand, within QEN71_RS26125 at 5828.178 kb on + strand, within QEN71_RS26125 at 5828.179 kb on - strand, within QEN71_RS26125 at 5828.179 kb on - strand, within QEN71_RS26125 at 5828.180 kb on + strand, within QEN71_RS26125 at 5828.180 kb on + strand, within QEN71_RS26125 at 5828.180 kb on + strand, within QEN71_RS26125 at 5828.180 kb on + strand, within QEN71_RS26125 at 5828.180 kb on + strand, within QEN71_RS26125 at 5828.180 kb on + strand, within QEN71_RS26125 at 5828.181 kb on - strand, within QEN71_RS26125 at 5828.181 kb on - strand, within QEN71_RS26125 at 5828.181 kb on - strand, within QEN71_RS26125 at 5828.181 kb on - strand, within QEN71_RS26125 at 5828.201 kb on + strand, within QEN71_RS26125 at 5828.201 kb on + strand, within QEN71_RS26125 at 5828.201 kb on + strand, within QEN71_RS26125 at 5828.202 kb on - strand, within QEN71_RS26125 at 5828.202 kb on - strand, within QEN71_RS26125 at 5828.202 kb on - strand, within QEN71_RS26125 at 5828.202 kb on - strand, within QEN71_RS26125 at 5828.202 kb on - strand, within QEN71_RS26125 at 5828.202 kb on - strand, within QEN71_RS26125 at 5828.217 kb on + strand, within QEN71_RS26125 at 5828.217 kb on + strand, within QEN71_RS26125 at 5828.266 kb on - strand at 5828.457 kb on + strand at 5828.458 kb on - strand at 5828.559 kb on + strand, within QEN71_RS26130 at 5828.559 kb on + strand, within QEN71_RS26130 at 5828.559 kb on + strand, within QEN71_RS26130 at 5828.559 kb on + strand, within QEN71_RS26130 at 5828.559 kb on + strand, within QEN71_RS26130 at 5828.559 kb on + strand, within QEN71_RS26130 at 5828.560 kb on - strand, within QEN71_RS26130 at 5828.560 kb on - strand, within QEN71_RS26130 at 5828.710 kb on + strand, within QEN71_RS26130 at 5828.711 kb on - strand, within QEN71_RS26130 at 5828.711 kb on - strand, within QEN71_RS26130 at 5828.724 kb on + strand, within QEN71_RS26130 at 5828.725 kb on - strand, within QEN71_RS26130 at 5828.991 kb on + strand, within QEN71_RS26130 at 5828.991 kb on + strand, within QEN71_RS26130 at 5828.991 kb on + strand, within QEN71_RS26130 at 5828.992 kb on - strand, within QEN71_RS26130 at 5828.992 kb on - strand, within QEN71_RS26130 at 5828.992 kb on - strand, within QEN71_RS26130 at 5828.992 kb on - strand, within QEN71_RS26130 at 5829.063 kb on + strand, within QEN71_RS26130 at 5829.063 kb on + strand, within QEN71_RS26130 at 5829.064 kb on - strand, within QEN71_RS26130 at 5829.064 kb on - strand, within QEN71_RS26130 at 5829.064 kb on - strand, within QEN71_RS26130 at 5829.064 kb on - strand, within QEN71_RS26130 at 5829.064 kb on - strand, within QEN71_RS26130 at 5829.064 kb on - strand, within QEN71_RS26130 at 5829.064 kb on - strand, within QEN71_RS26130 at 5829.064 kb on - strand, within QEN71_RS26130 at 5829.064 kb on - strand, within QEN71_RS26130 at 5829.185 kb on - strand, within QEN71_RS26130 at 5829.185 kb on - strand, within QEN71_RS26130 at 5829.185 kb on - strand, within QEN71_RS26130 at 5829.207 kb on + strand, within QEN71_RS26130 at 5829.207 kb on + strand, within QEN71_RS26130 at 5829.207 kb on + strand, within QEN71_RS26130 at 5829.208 kb on - strand, within QEN71_RS26130 at 5829.208 kb on - strand, within QEN71_RS26130 at 5829.208 kb on - strand, within QEN71_RS26130 at 5829.208 kb on - strand, within QEN71_RS26130
Per-strain Table
Position Strand Gene LocusTag Fraction Fumaric (C) remove 5,826,606 + QEN71_RS26120 0.90 +0.5 5,826,606 + QEN71_RS26120 0.90 -0.5 5,826,606 + QEN71_RS26120 0.90 +3.2 5,826,606 + QEN71_RS26120 0.90 +0.2 5,826,607 - QEN71_RS26120 0.90 -0.5 5,826,607 - QEN71_RS26120 0.90 -0.6 5,826,607 - QEN71_RS26120 0.90 +0.6 5,826,607 - QEN71_RS26120 0.90 -0.3 5,826,607 - QEN71_RS26120 0.90 -0.2 5,826,679 + -0.3 5,826,679 + -0.1 5,826,679 + +0.2 5,826,679 + -1.0 5,826,679 + -1.1 5,826,679 + +0.5 5,826,679 + +0.0 5,826,680 - +0.8 5,826,680 - -0.1 5,826,745 + +1.1 5,826,746 - +1.5 5,826,762 + +0.5 5,826,762 + -0.7 5,826,763 - +0.2 5,826,811 + -1.3 5,826,812 - -2.1 5,826,812 - +1.4 5,826,857 + +1.2 5,826,920 + +0.1 5,826,921 - -1.6 5,826,976 + -0.1 5,826,976 + +1.1 5,826,976 + +0.0 5,827,108 + -0.1 5,827,151 - +0.7 5,827,192 + -0.2 5,827,193 - -1.3 5,827,220 + +0.3 5,827,269 + -1.6 5,827,269 + -0.1 5,827,269 + -0.2 5,827,269 + +0.7 5,827,269 + -0.4 5,827,269 + +0.5 5,827,269 + -0.4 5,827,270 - -0.6 5,827,386 + -2.1 5,827,386 + +0.2 5,827,386 + -0.4 5,827,386 + +0.1 5,827,386 + +1.8 5,827,386 + -0.4 5,827,387 - -0.3 5,827,387 - -0.5 5,827,387 - +0.2 5,827,566 + QEN71_RS26125 0.19 +0.1 5,827,566 + QEN71_RS26125 0.19 -0.1 5,827,566 + QEN71_RS26125 0.19 +0.2 5,827,566 + QEN71_RS26125 0.19 +2.3 5,827,567 - QEN71_RS26125 0.19 -0.2 5,827,789 - QEN71_RS26125 0.42 -0.6 5,827,905 + QEN71_RS26125 0.54 -0.8 5,827,906 - QEN71_RS26125 0.54 +1.0 5,827,906 - QEN71_RS26125 0.54 +1.6 5,827,906 - QEN71_RS26125 0.54 -0.8 5,827,906 - QEN71_RS26125 0.54 -2.1 5,828,053 - QEN71_RS26125 0.69 -1.7 5,828,053 - QEN71_RS26125 0.69 -0.9 5,828,053 - QEN71_RS26125 0.69 +0.5 5,828,053 - QEN71_RS26125 0.69 +1.2 5,828,178 + QEN71_RS26125 0.81 -0.6 5,828,178 + QEN71_RS26125 0.81 +0.1 5,828,178 + QEN71_RS26125 0.81 -0.1 5,828,178 + QEN71_RS26125 0.81 -0.8 5,828,179 - QEN71_RS26125 0.81 -0.1 5,828,179 - QEN71_RS26125 0.81 -3.0 5,828,180 + QEN71_RS26125 0.81 -0.1 5,828,180 + QEN71_RS26125 0.81 -1.1 5,828,180 + QEN71_RS26125 0.81 -0.4 5,828,180 + QEN71_RS26125 0.81 -0.9 5,828,180 + QEN71_RS26125 0.81 -0.6 5,828,180 + QEN71_RS26125 0.81 -1.1 5,828,181 - QEN71_RS26125 0.82 -0.4 5,828,181 - QEN71_RS26125 0.82 -0.2 5,828,181 - QEN71_RS26125 0.82 +0.9 5,828,181 - QEN71_RS26125 0.82 -1.1 5,828,201 + QEN71_RS26125 0.84 -1.3 5,828,201 + QEN71_RS26125 0.84 -1.4 5,828,201 + QEN71_RS26125 0.84 -0.5 5,828,202 - QEN71_RS26125 0.84 +0.4 5,828,202 - QEN71_RS26125 0.84 -0.9 5,828,202 - QEN71_RS26125 0.84 -0.4 5,828,202 - QEN71_RS26125 0.84 +0.5 5,828,202 - QEN71_RS26125 0.84 +0.0 5,828,202 - QEN71_RS26125 0.84 +0.7 5,828,217 + QEN71_RS26125 0.85 +0.7 5,828,217 + QEN71_RS26125 0.85 -0.4 5,828,266 - -0.1 5,828,457 + +0.0 5,828,458 - +0.1 5,828,559 + QEN71_RS26130 0.13 +1.2 5,828,559 + QEN71_RS26130 0.13 +2.6 5,828,559 + QEN71_RS26130 0.13 -1.1 5,828,559 + QEN71_RS26130 0.13 +0.4 5,828,559 + QEN71_RS26130 0.13 -3.2 5,828,559 + QEN71_RS26130 0.13 +0.9 5,828,560 - QEN71_RS26130 0.13 -0.5 5,828,560 - QEN71_RS26130 0.13 -1.8 5,828,710 + QEN71_RS26130 0.28 -0.9 5,828,711 - QEN71_RS26130 0.28 +0.2 5,828,711 - QEN71_RS26130 0.28 +0.9 5,828,724 + QEN71_RS26130 0.29 +0.1 5,828,725 - QEN71_RS26130 0.30 -0.1 5,828,991 + QEN71_RS26130 0.56 -0.9 5,828,991 + QEN71_RS26130 0.56 -0.2 5,828,991 + QEN71_RS26130 0.56 +1.2 5,828,992 - QEN71_RS26130 0.56 +0.4 5,828,992 - QEN71_RS26130 0.56 +0.3 5,828,992 - QEN71_RS26130 0.56 +0.7 5,828,992 - QEN71_RS26130 0.56 +0.1 5,829,063 + QEN71_RS26130 0.63 -0.2 5,829,063 + QEN71_RS26130 0.63 -0.4 5,829,064 - QEN71_RS26130 0.63 +1.1 5,829,064 - QEN71_RS26130 0.63 -0.5 5,829,064 - QEN71_RS26130 0.63 -0.3 5,829,064 - QEN71_RS26130 0.63 -1.7 5,829,064 - QEN71_RS26130 0.63 -0.0 5,829,064 - QEN71_RS26130 0.63 -0.5 5,829,064 - QEN71_RS26130 0.63 -1.4 5,829,064 - QEN71_RS26130 0.63 -1.4 5,829,064 - QEN71_RS26130 0.63 +0.7 5,829,185 - QEN71_RS26130 0.75 -1.6 5,829,185 - QEN71_RS26130 0.75 -1.4 5,829,185 - QEN71_RS26130 0.75 +0.3 5,829,207 + QEN71_RS26130 0.77 +1.1 5,829,207 + QEN71_RS26130 0.77 -0.4 5,829,207 + QEN71_RS26130 0.77 -0.3 5,829,208 - QEN71_RS26130 0.77 +0.4 5,829,208 - QEN71_RS26130 0.77 -1.6 5,829,208 - QEN71_RS26130 0.77 +0.4 5,829,208 - QEN71_RS26130 0.77 -0.7
Or see this region's nucleotide sequence