Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS25230

Experiment: Fumaric (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS25225 and QEN71_RS25230 are separated by 126 nucleotidesQEN71_RS25230 and QEN71_RS25235 are separated by 28 nucleotides QEN71_RS25225: QEN71_RS25225 - class A beta-lactamase, at 5,612,751 to 5,613,644 _RS25225 QEN71_RS25230: QEN71_RS25230 - uroporphyrinogen-III C-methyltransferase, at 5,613,771 to 5,614,538 _RS25230 QEN71_RS25235: QEN71_RS25235 - sulfate adenylyltransferase subunit 1, at 5,614,567 to 5,615,883 _RS25235 Position (kb) 5613 5614 5615Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 5612.795 kb on + strandat 5612.796 kb on - strandat 5612.796 kb on - strandat 5612.819 kb on + strandat 5612.839 kb on + strandat 5612.839 kb on + strandat 5612.839 kb on + strandat 5612.840 kb on - strandat 5612.840 kb on - strandat 5612.840 kb on - strandat 5612.840 kb on - strandat 5612.840 kb on - strandat 5612.840 kb on - strandat 5612.840 kb on - strandat 5612.840 kb on - strandat 5612.840 kb on - strandat 5612.840 kb on - strandat 5612.840 kb on - strandat 5612.855 kb on - strand, within QEN71_RS25225at 5612.855 kb on - strand, within QEN71_RS25225at 5612.872 kb on + strand, within QEN71_RS25225at 5612.873 kb on - strand, within QEN71_RS25225at 5612.873 kb on - strand, within QEN71_RS25225at 5612.873 kb on - strand, within QEN71_RS25225at 5612.873 kb on - strand, within QEN71_RS25225at 5612.873 kb on - strand, within QEN71_RS25225at 5612.873 kb on - strand, within QEN71_RS25225at 5612.873 kb on - strand, within QEN71_RS25225at 5612.902 kb on + strand, within QEN71_RS25225at 5612.902 kb on + strand, within QEN71_RS25225at 5612.903 kb on - strand, within QEN71_RS25225at 5612.903 kb on - strand, within QEN71_RS25225at 5612.949 kb on + strand, within QEN71_RS25225at 5612.950 kb on - strand, within QEN71_RS25225at 5612.950 kb on - strand, within QEN71_RS25225at 5612.950 kb on - strand, within QEN71_RS25225at 5612.981 kb on + strand, within QEN71_RS25225at 5612.981 kb on + strand, within QEN71_RS25225at 5612.982 kb on - strand, within QEN71_RS25225at 5613.089 kb on + strand, within QEN71_RS25225at 5613.090 kb on - strand, within QEN71_RS25225at 5613.155 kb on + strand, within QEN71_RS25225at 5613.155 kb on + strand, within QEN71_RS25225at 5613.155 kb on + strand, within QEN71_RS25225at 5613.156 kb on - strand, within QEN71_RS25225at 5613.156 kb on - strand, within QEN71_RS25225at 5613.156 kb on - strand, within QEN71_RS25225at 5613.156 kb on - strand, within QEN71_RS25225at 5613.156 kb on - strand, within QEN71_RS25225at 5613.448 kb on + strand, within QEN71_RS25225at 5613.448 kb on + strand, within QEN71_RS25225at 5613.457 kb on + strand, within QEN71_RS25225at 5613.457 kb on + strand, within QEN71_RS25225at 5613.457 kb on + strand, within QEN71_RS25225at 5613.458 kb on - strand, within QEN71_RS25225at 5613.458 kb on - strand, within QEN71_RS25225at 5613.458 kb on - strand, within QEN71_RS25225at 5614.048 kb on + strand, within QEN71_RS25230at 5614.048 kb on + strand, within QEN71_RS25230at 5614.048 kb on + strand, within QEN71_RS25230at 5614.048 kb on + strand, within QEN71_RS25230at 5614.048 kb on + strand, within QEN71_RS25230at 5614.049 kb on - strand, within QEN71_RS25230at 5614.049 kb on - strand, within QEN71_RS25230at 5614.049 kb on - strand, within QEN71_RS25230at 5614.049 kb on - strand, within QEN71_RS25230at 5614.049 kb on - strand, within QEN71_RS25230at 5614.049 kb on - strand, within QEN71_RS25230at 5614.049 kb on - strand, within QEN71_RS25230at 5614.049 kb on - strand, within QEN71_RS25230at 5614.213 kb on + strand, within QEN71_RS25230at 5614.213 kb on + strand, within QEN71_RS25230at 5614.340 kb on + strand, within QEN71_RS25230at 5614.340 kb on + strand, within QEN71_RS25230at 5614.341 kb on - strand, within QEN71_RS25230at 5614.341 kb on - strand, within QEN71_RS25230at 5614.418 kb on + strand, within QEN71_RS25230at 5614.419 kb on - strand, within QEN71_RS25230at 5614.525 kb on + strandat 5614.525 kb on + strandat 5614.525 kb on + strandat 5614.525 kb on + strandat 5614.525 kb on + strandat 5614.525 kb on + strandat 5614.525 kb on + strandat 5614.525 kb on + strandat 5614.526 kb on - strandat 5614.526 kb on - strandat 5614.526 kb on - strandat 5614.526 kb on - strandat 5614.532 kb on + strandat 5614.661 kb on + strandat 5614.661 kb on + strandat 5614.662 kb on - strandat 5614.755 kb on + strand, within QEN71_RS25235at 5614.755 kb on + strand, within QEN71_RS25235at 5614.755 kb on + strand, within QEN71_RS25235at 5614.755 kb on + strand, within QEN71_RS25235at 5614.755 kb on + strand, within QEN71_RS25235at 5614.756 kb on - strand, within QEN71_RS25235at 5614.756 kb on - strand, within QEN71_RS25235at 5614.756 kb on - strand, within QEN71_RS25235at 5614.756 kb on - strand, within QEN71_RS25235at 5614.756 kb on - strand, within QEN71_RS25235at 5614.826 kb on + strand, within QEN71_RS25235at 5614.826 kb on + strand, within QEN71_RS25235at 5614.827 kb on - strand, within QEN71_RS25235at 5614.827 kb on - strand, within QEN71_RS25235at 5614.923 kb on + strand, within QEN71_RS25235at 5614.923 kb on + strand, within QEN71_RS25235at 5615.114 kb on + strand, within QEN71_RS25235at 5615.114 kb on + strand, within QEN71_RS25235at 5615.114 kb on + strand, within QEN71_RS25235at 5615.115 kb on - strand, within QEN71_RS25235at 5615.115 kb on - strand, within QEN71_RS25235at 5615.243 kb on + strand, within QEN71_RS25235at 5615.348 kb on + strand, within QEN71_RS25235at 5615.348 kb on + strand, within QEN71_RS25235at 5615.348 kb on + strand, within QEN71_RS25235at 5615.348 kb on + strand, within QEN71_RS25235at 5615.349 kb on - strand, within QEN71_RS25235at 5615.349 kb on - strand, within QEN71_RS25235at 5615.349 kb on - strand, within QEN71_RS25235at 5615.349 kb on - strand, within QEN71_RS25235at 5615.385 kb on - strand, within QEN71_RS25235at 5615.385 kb on - strand, within QEN71_RS25235at 5615.385 kb on - strand, within QEN71_RS25235

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fumaric (C)
remove
5,612,795 + +0.1
5,612,796 - +0.1
5,612,796 - +0.8
5,612,819 + -0.4
5,612,839 + -1.4
5,612,839 + -0.1
5,612,839 + +0.7
5,612,840 - -1.4
5,612,840 - -1.2
5,612,840 - -0.7
5,612,840 - +1.9
5,612,840 - +1.0
5,612,840 - +0.5
5,612,840 - +0.5
5,612,840 - +0.3
5,612,840 - +0.4
5,612,840 - -0.1
5,612,840 - +1.5
5,612,855 - QEN71_RS25225 0.12 -0.9
5,612,855 - QEN71_RS25225 0.12 -0.0
5,612,872 + QEN71_RS25225 0.14 -0.7
5,612,873 - QEN71_RS25225 0.14 +0.3
5,612,873 - QEN71_RS25225 0.14 -1.5
5,612,873 - QEN71_RS25225 0.14 -1.8
5,612,873 - QEN71_RS25225 0.14 +0.7
5,612,873 - QEN71_RS25225 0.14 -0.9
5,612,873 - QEN71_RS25225 0.14 -0.2
5,612,873 - QEN71_RS25225 0.14 -0.7
5,612,902 + QEN71_RS25225 0.17 -0.0
5,612,902 + QEN71_RS25225 0.17 +1.6
5,612,903 - QEN71_RS25225 0.17 -0.2
5,612,903 - QEN71_RS25225 0.17 -0.4
5,612,949 + QEN71_RS25225 0.22 -0.0
5,612,950 - QEN71_RS25225 0.22 -0.6
5,612,950 - QEN71_RS25225 0.22 -0.2
5,612,950 - QEN71_RS25225 0.22 -0.3
5,612,981 + QEN71_RS25225 0.26 -0.6
5,612,981 + QEN71_RS25225 0.26 +0.1
5,612,982 - QEN71_RS25225 0.26 -0.4
5,613,089 + QEN71_RS25225 0.38 -0.1
5,613,090 - QEN71_RS25225 0.38 -0.3
5,613,155 + QEN71_RS25225 0.45 +0.1
5,613,155 + QEN71_RS25225 0.45 -2.7
5,613,155 + QEN71_RS25225 0.45 -0.3
5,613,156 - QEN71_RS25225 0.45 +0.9
5,613,156 - QEN71_RS25225 0.45 +0.7
5,613,156 - QEN71_RS25225 0.45 +1.1
5,613,156 - QEN71_RS25225 0.45 -1.9
5,613,156 - QEN71_RS25225 0.45 -1.5
5,613,448 + QEN71_RS25225 0.78 -0.4
5,613,448 + QEN71_RS25225 0.78 -0.8
5,613,457 + QEN71_RS25225 0.79 +0.2
5,613,457 + QEN71_RS25225 0.79 -0.1
5,613,457 + QEN71_RS25225 0.79 -1.1
5,613,458 - QEN71_RS25225 0.79 +0.1
5,613,458 - QEN71_RS25225 0.79 -0.9
5,613,458 - QEN71_RS25225 0.79 -0.2
5,614,048 + QEN71_RS25230 0.36 -0.4
5,614,048 + QEN71_RS25230 0.36 -0.4
5,614,048 + QEN71_RS25230 0.36 -1.8
5,614,048 + QEN71_RS25230 0.36 -1.0
5,614,048 + QEN71_RS25230 0.36 -0.1
5,614,049 - QEN71_RS25230 0.36 -3.4
5,614,049 - QEN71_RS25230 0.36 -1.7
5,614,049 - QEN71_RS25230 0.36 -2.2
5,614,049 - QEN71_RS25230 0.36 -1.2
5,614,049 - QEN71_RS25230 0.36 -0.1
5,614,049 - QEN71_RS25230 0.36 -2.0
5,614,049 - QEN71_RS25230 0.36 -0.5
5,614,049 - QEN71_RS25230 0.36 -1.8
5,614,213 + QEN71_RS25230 0.58 -1.2
5,614,213 + QEN71_RS25230 0.58 -0.4
5,614,340 + QEN71_RS25230 0.74 -2.1
5,614,340 + QEN71_RS25230 0.74 -2.2
5,614,341 - QEN71_RS25230 0.74 -2.2
5,614,341 - QEN71_RS25230 0.74 -1.5
5,614,418 + QEN71_RS25230 0.84 -0.5
5,614,419 - QEN71_RS25230 0.84 -0.1
5,614,525 + -1.2
5,614,525 + -1.2
5,614,525 + -1.0
5,614,525 + -1.4
5,614,525 + -1.2
5,614,525 + -0.7
5,614,525 + -2.2
5,614,525 + -1.5
5,614,526 - -1.2
5,614,526 - -0.1
5,614,526 - -0.8
5,614,526 - -1.8
5,614,532 + -3.8
5,614,661 + -3.0
5,614,661 + -0.6
5,614,662 - -2.7
5,614,755 + QEN71_RS25235 0.14 -3.6
5,614,755 + QEN71_RS25235 0.14 -1.5
5,614,755 + QEN71_RS25235 0.14 -2.7
5,614,755 + QEN71_RS25235 0.14 -3.2
5,614,755 + QEN71_RS25235 0.14 -3.0
5,614,756 - QEN71_RS25235 0.14 -2.8
5,614,756 - QEN71_RS25235 0.14 -2.0
5,614,756 - QEN71_RS25235 0.14 -2.2
5,614,756 - QEN71_RS25235 0.14 -1.2
5,614,756 - QEN71_RS25235 0.14 -3.3
5,614,826 + QEN71_RS25235 0.20 -3.3
5,614,826 + QEN71_RS25235 0.20 -2.1
5,614,827 - QEN71_RS25235 0.20 -0.9
5,614,827 - QEN71_RS25235 0.20 -2.2
5,614,923 + QEN71_RS25235 0.27 -3.1
5,614,923 + QEN71_RS25235 0.27 -0.6
5,615,114 + QEN71_RS25235 0.42 -2.4
5,615,114 + QEN71_RS25235 0.42 -2.2
5,615,114 + QEN71_RS25235 0.42 -1.0
5,615,115 - QEN71_RS25235 0.42 -3.3
5,615,115 - QEN71_RS25235 0.42 -3.6
5,615,243 + QEN71_RS25235 0.51 -0.1
5,615,348 + QEN71_RS25235 0.59 -0.4
5,615,348 + QEN71_RS25235 0.59 -4.8
5,615,348 + QEN71_RS25235 0.59 -1.2
5,615,348 + QEN71_RS25235 0.59 -3.1
5,615,349 - QEN71_RS25235 0.59 -2.4
5,615,349 - QEN71_RS25235 0.59 -2.8
5,615,349 - QEN71_RS25235 0.59 -0.7
5,615,349 - QEN71_RS25235 0.59 -1.4
5,615,385 - QEN71_RS25235 0.62 -2.7
5,615,385 - QEN71_RS25235 0.62 -1.2
5,615,385 - QEN71_RS25235 0.62 -4.2

Or see this region's nucleotide sequence