Experiment: Fumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS24835 and QEN71_RS24840 are separated by 149 nucleotides QEN71_RS24840 and QEN71_RS24845 are separated by 106 nucleotides QEN71_RS24845 and QEN71_RS24850 overlap by 17 nucleotides QEN71_RS24850 and QEN71_RS24855 are separated by 224 nucleotides
QEN71_RS24835: QEN71_RS24835 - sensor domain-containing diguanylate cyclase, at 5,524,041 to 5,525,720
_RS24835
QEN71_RS24840: QEN71_RS24840 - hypothetical protein, at 5,525,870 to 5,526,136
_RS24840
QEN71_RS24845: QEN71_RS24845 - ATP-binding protein, at 5,526,243 to 5,527,574
_RS24845
QEN71_RS24850: QEN71_RS24850 - response regulator, at 5,527,558 to 5,528,283
_RS24850
QEN71_RS24855: QEN71_RS24855 - periplasmic heavy metal sensor, at 5,528,508 to 5,529,059
_RS24855
Position (kb) 5526
5527
5528 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5525.254 kb on + strand, within QEN71_RS24835 at 5525.254 kb on + strand, within QEN71_RS24835 at 5525.254 kb on + strand, within QEN71_RS24835 at 5525.254 kb on + strand, within QEN71_RS24835 at 5525.254 kb on + strand, within QEN71_RS24835 at 5525.255 kb on - strand, within QEN71_RS24835 at 5525.255 kb on - strand, within QEN71_RS24835 at 5525.255 kb on - strand, within QEN71_RS24835 at 5525.378 kb on + strand, within QEN71_RS24835 at 5525.379 kb on - strand, within QEN71_RS24835 at 5525.379 kb on - strand, within QEN71_RS24835 at 5525.456 kb on + strand, within QEN71_RS24835 at 5525.456 kb on + strand, within QEN71_RS24835 at 5525.456 kb on + strand, within QEN71_RS24835 at 5525.567 kb on + strand at 5525.567 kb on + strand at 5525.628 kb on + strand at 5525.628 kb on + strand at 5525.628 kb on + strand at 5525.629 kb on - strand at 5525.629 kb on - strand at 5525.718 kb on + strand at 5525.718 kb on + strand at 5525.718 kb on + strand at 5525.718 kb on + strand at 5525.718 kb on + strand at 5525.718 kb on + strand at 5525.718 kb on + strand at 5525.719 kb on - strand at 5525.719 kb on - strand at 5525.719 kb on - strand at 5525.719 kb on - strand at 5525.719 kb on - strand at 5525.719 kb on - strand at 5525.719 kb on - strand at 5525.719 kb on - strand at 5525.719 kb on - strand at 5525.719 kb on - strand at 5525.719 kb on - strand at 5525.811 kb on + strand at 5525.811 kb on + strand at 5525.811 kb on + strand at 5525.812 kb on - strand at 5525.812 kb on - strand at 5525.812 kb on - strand at 5525.812 kb on - strand at 5525.812 kb on - strand at 5525.826 kb on + strand at 5525.826 kb on + strand at 5525.827 kb on - strand at 5525.849 kb on + strand at 5525.849 kb on + strand at 5525.849 kb on + strand at 5525.850 kb on - strand at 5525.850 kb on - strand at 5525.850 kb on - strand at 5525.850 kb on - strand at 5525.850 kb on - strand at 5525.850 kb on - strand at 5525.850 kb on - strand at 5525.850 kb on - strand at 5525.939 kb on + strand, within QEN71_RS24840 at 5525.940 kb on - strand, within QEN71_RS24840 at 5525.940 kb on - strand, within QEN71_RS24840 at 5525.978 kb on + strand, within QEN71_RS24840 at 5525.978 kb on + strand, within QEN71_RS24840 at 5525.979 kb on - strand, within QEN71_RS24840 at 5525.979 kb on - strand, within QEN71_RS24840 at 5525.979 kb on - strand, within QEN71_RS24840 at 5525.979 kb on - strand, within QEN71_RS24840 at 5525.979 kb on - strand, within QEN71_RS24840 at 5525.979 kb on - strand, within QEN71_RS24840 at 5525.979 kb on - strand, within QEN71_RS24840 at 5525.979 kb on - strand, within QEN71_RS24840 at 5525.979 kb on - strand, within QEN71_RS24840 at 5525.979 kb on - strand, within QEN71_RS24840 at 5526.010 kb on - strand, within QEN71_RS24840 at 5526.042 kb on - strand, within QEN71_RS24840 at 5526.042 kb on - strand, within QEN71_RS24840 at 5526.042 kb on - strand, within QEN71_RS24840 at 5526.053 kb on + strand, within QEN71_RS24840 at 5526.053 kb on + strand, within QEN71_RS24840 at 5526.053 kb on + strand, within QEN71_RS24840 at 5526.053 kb on + strand, within QEN71_RS24840 at 5526.053 kb on + strand, within QEN71_RS24840 at 5526.053 kb on + strand, within QEN71_RS24840 at 5526.053 kb on + strand, within QEN71_RS24840 at 5526.054 kb on - strand, within QEN71_RS24840 at 5526.054 kb on - strand, within QEN71_RS24840 at 5526.054 kb on - strand, within QEN71_RS24840 at 5526.054 kb on - strand, within QEN71_RS24840 at 5526.054 kb on - strand, within QEN71_RS24840 at 5526.054 kb on - strand, within QEN71_RS24840 at 5526.134 kb on + strand at 5526.135 kb on - strand at 5526.180 kb on + strand at 5526.181 kb on - strand at 5526.569 kb on - strand, within QEN71_RS24845 at 5526.569 kb on - strand, within QEN71_RS24845 at 5526.569 kb on - strand, within QEN71_RS24845 at 5526.691 kb on + strand, within QEN71_RS24845 at 5526.691 kb on + strand, within QEN71_RS24845 at 5526.691 kb on + strand, within QEN71_RS24845 at 5526.691 kb on + strand, within QEN71_RS24845 at 5526.692 kb on - strand, within QEN71_RS24845 at 5526.692 kb on - strand, within QEN71_RS24845 at 5526.692 kb on - strand, within QEN71_RS24845 at 5526.692 kb on - strand, within QEN71_RS24845 at 5526.692 kb on - strand, within QEN71_RS24845 at 5526.729 kb on + strand, within QEN71_RS24845 at 5526.729 kb on + strand, within QEN71_RS24845 at 5526.729 kb on + strand, within QEN71_RS24845 at 5526.729 kb on + strand, within QEN71_RS24845 at 5526.729 kb on + strand, within QEN71_RS24845 at 5526.730 kb on - strand, within QEN71_RS24845 at 5526.730 kb on - strand, within QEN71_RS24845 at 5526.730 kb on - strand, within QEN71_RS24845 at 5526.730 kb on - strand, within QEN71_RS24845 at 5526.730 kb on - strand, within QEN71_RS24845 at 5526.730 kb on - strand, within QEN71_RS24845 at 5526.730 kb on - strand, within QEN71_RS24845 at 5526.741 kb on - strand, within QEN71_RS24845 at 5527.071 kb on + strand, within QEN71_RS24845 at 5527.071 kb on + strand, within QEN71_RS24845 at 5527.071 kb on + strand, within QEN71_RS24845 at 5527.071 kb on + strand, within QEN71_RS24845 at 5527.071 kb on + strand, within QEN71_RS24845 at 5527.071 kb on + strand, within QEN71_RS24845 at 5527.071 kb on + strand, within QEN71_RS24845 at 5527.071 kb on + strand, within QEN71_RS24845 at 5527.071 kb on + strand, within QEN71_RS24845 at 5527.071 kb on + strand, within QEN71_RS24845 at 5527.072 kb on - strand, within QEN71_RS24845 at 5527.072 kb on - strand, within QEN71_RS24845 at 5527.072 kb on - strand, within QEN71_RS24845 at 5527.072 kb on - strand, within QEN71_RS24845 at 5527.072 kb on - strand, within QEN71_RS24845 at 5527.072 kb on - strand, within QEN71_RS24845 at 5527.072 kb on - strand, within QEN71_RS24845 at 5527.072 kb on - strand, within QEN71_RS24845 at 5527.072 kb on - strand, within QEN71_RS24845 at 5527.265 kb on + strand, within QEN71_RS24845 at 5527.266 kb on - strand, within QEN71_RS24845 at 5527.266 kb on - strand, within QEN71_RS24845 at 5527.323 kb on + strand, within QEN71_RS24845 at 5527.323 kb on + strand, within QEN71_RS24845 at 5527.323 kb on + strand, within QEN71_RS24845 at 5527.323 kb on + strand, within QEN71_RS24845 at 5527.324 kb on - strand, within QEN71_RS24845 at 5527.324 kb on - strand, within QEN71_RS24845 at 5527.324 kb on - strand, within QEN71_RS24845 at 5527.401 kb on + strand, within QEN71_RS24845 at 5527.401 kb on + strand, within QEN71_RS24845 at 5527.401 kb on + strand, within QEN71_RS24845 at 5527.401 kb on + strand, within QEN71_RS24845 at 5527.401 kb on + strand, within QEN71_RS24845 at 5527.401 kb on + strand, within QEN71_RS24845 at 5527.401 kb on + strand, within QEN71_RS24845 at 5527.402 kb on - strand, within QEN71_RS24845 at 5527.402 kb on - strand, within QEN71_RS24845 at 5527.402 kb on - strand, within QEN71_RS24845 at 5527.402 kb on - strand, within QEN71_RS24845 at 5527.402 kb on - strand, within QEN71_RS24845 at 5527.451 kb on - strand at 5527.451 kb on - strand at 5527.451 kb on - strand at 5527.492 kb on + strand at 5527.493 kb on - strand at 5527.493 kb on - strand at 5527.493 kb on - strand at 5527.601 kb on + strand at 5527.601 kb on + strand at 5527.601 kb on + strand at 5527.601 kb on + strand at 5527.601 kb on + strand at 5527.601 kb on + strand at 5527.602 kb on - strand at 5527.602 kb on - strand at 5527.602 kb on - strand at 5527.709 kb on + strand, within QEN71_RS24850 at 5527.710 kb on - strand, within QEN71_RS24850 at 5527.933 kb on + strand, within QEN71_RS24850 at 5527.934 kb on - strand, within QEN71_RS24850 at 5527.985 kb on + strand, within QEN71_RS24850 at 5527.985 kb on + strand, within QEN71_RS24850 at 5527.985 kb on + strand, within QEN71_RS24850 at 5528.222 kb on + strand at 5528.223 kb on - strand at 5528.277 kb on + strand at 5528.295 kb on + strand at 5528.295 kb on + strand at 5528.295 kb on + strand at 5528.296 kb on - strand at 5528.296 kb on - strand at 5528.371 kb on + strand at 5528.371 kb on + strand at 5528.371 kb on + strand at 5528.371 kb on + strand at 5528.371 kb on + strand at 5528.371 kb on + strand at 5528.372 kb on - strand at 5528.372 kb on - strand at 5528.372 kb on - strand at 5528.372 kb on - strand at 5528.372 kb on - strand at 5528.372 kb on - strand at 5528.372 kb on - strand at 5528.372 kb on - strand at 5528.372 kb on - strand at 5528.372 kb on - strand at 5528.372 kb on - strand at 5528.397 kb on - strand at 5528.397 kb on - strand at 5528.397 kb on - strand at 5528.402 kb on + strand at 5528.403 kb on - strand at 5528.403 kb on - strand at 5528.427 kb on + strand at 5528.427 kb on + strand at 5528.428 kb on - strand at 5528.428 kb on - strand at 5528.428 kb on - strand at 5528.428 kb on - strand at 5528.428 kb on - strand at 5528.439 kb on + strand at 5528.486 kb on + strand at 5528.486 kb on + strand at 5528.486 kb on + strand at 5528.486 kb on + strand at 5528.487 kb on - strand at 5528.487 kb on - strand at 5528.487 kb on - strand at 5528.487 kb on - strand at 5528.506 kb on + strand at 5528.506 kb on + strand at 5528.506 kb on + strand at 5528.506 kb on + strand at 5528.506 kb on + strand at 5528.506 kb on + strand at 5528.507 kb on - strand at 5528.507 kb on - strand at 5528.507 kb on - strand at 5528.507 kb on - strand at 5528.507 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumaric (C) remove 5,525,254 + QEN71_RS24835 0.72 +0.1 5,525,254 + QEN71_RS24835 0.72 -0.1 5,525,254 + QEN71_RS24835 0.72 -0.8 5,525,254 + QEN71_RS24835 0.72 -0.4 5,525,254 + QEN71_RS24835 0.72 +0.1 5,525,255 - QEN71_RS24835 0.72 +0.5 5,525,255 - QEN71_RS24835 0.72 -0.8 5,525,255 - QEN71_RS24835 0.72 +0.5 5,525,378 + QEN71_RS24835 0.80 +0.5 5,525,379 - QEN71_RS24835 0.80 -1.0 5,525,379 - QEN71_RS24835 0.80 -0.9 5,525,456 + QEN71_RS24835 0.84 +0.2 5,525,456 + QEN71_RS24835 0.84 -0.6 5,525,456 + QEN71_RS24835 0.84 -0.9 5,525,567 + +0.2 5,525,567 + +0.1 5,525,628 + -0.4 5,525,628 + -0.1 5,525,628 + +1.3 5,525,629 - +1.0 5,525,629 - +0.5 5,525,718 + +0.2 5,525,718 + +0.2 5,525,718 + -0.1 5,525,718 + -0.1 5,525,718 + -0.3 5,525,718 + -0.5 5,525,718 + -0.9 5,525,719 - +0.0 5,525,719 - -0.4 5,525,719 - -0.3 5,525,719 - +0.2 5,525,719 - -2.0 5,525,719 - +0.6 5,525,719 - +0.2 5,525,719 - -0.2 5,525,719 - +2.2 5,525,719 - +2.5 5,525,719 - +0.3 5,525,811 + -0.3 5,525,811 + +1.2 5,525,811 + -0.7 5,525,812 - +0.4 5,525,812 - -0.1 5,525,812 - +0.2 5,525,812 - -0.4 5,525,812 - +0.6 5,525,826 + -0.1 5,525,826 + +0.9 5,525,827 - -0.5 5,525,849 + +0.2 5,525,849 + +0.3 5,525,849 + +0.0 5,525,850 - +0.3 5,525,850 - -2.2 5,525,850 - -0.7 5,525,850 - +0.1 5,525,850 - -0.8 5,525,850 - +0.2 5,525,850 - -0.1 5,525,850 - +0.9 5,525,939 + QEN71_RS24840 0.26 +0.5 5,525,940 - QEN71_RS24840 0.26 -1.0 5,525,940 - QEN71_RS24840 0.26 -0.9 5,525,978 + QEN71_RS24840 0.40 +0.1 5,525,978 + QEN71_RS24840 0.40 +0.3 5,525,979 - QEN71_RS24840 0.41 -1.3 5,525,979 - QEN71_RS24840 0.41 +0.5 5,525,979 - QEN71_RS24840 0.41 +0.8 5,525,979 - QEN71_RS24840 0.41 -0.8 5,525,979 - QEN71_RS24840 0.41 -1.1 5,525,979 - QEN71_RS24840 0.41 +0.3 5,525,979 - QEN71_RS24840 0.41 +0.1 5,525,979 - QEN71_RS24840 0.41 +0.5 5,525,979 - QEN71_RS24840 0.41 +0.0 5,525,979 - QEN71_RS24840 0.41 -0.1 5,526,010 - QEN71_RS24840 0.52 +0.3 5,526,042 - QEN71_RS24840 0.64 +0.2 5,526,042 - QEN71_RS24840 0.64 +0.2 5,526,042 - QEN71_RS24840 0.64 -0.2 5,526,053 + QEN71_RS24840 0.69 +1.0 5,526,053 + QEN71_RS24840 0.69 +1.1 5,526,053 + QEN71_RS24840 0.69 -0.7 5,526,053 + QEN71_RS24840 0.69 -0.3 5,526,053 + QEN71_RS24840 0.69 -0.8 5,526,053 + QEN71_RS24840 0.69 -0.0 5,526,053 + QEN71_RS24840 0.69 +0.5 5,526,054 - QEN71_RS24840 0.69 -0.1 5,526,054 - QEN71_RS24840 0.69 -0.2 5,526,054 - QEN71_RS24840 0.69 +0.4 5,526,054 - QEN71_RS24840 0.69 -0.2 5,526,054 - QEN71_RS24840 0.69 -0.0 5,526,054 - QEN71_RS24840 0.69 -0.3 5,526,134 + +0.6 5,526,135 - +0.4 5,526,180 + -0.1 5,526,181 - -2.5 5,526,569 - QEN71_RS24845 0.24 -0.4 5,526,569 - QEN71_RS24845 0.24 -1.1 5,526,569 - QEN71_RS24845 0.24 +0.1 5,526,691 + QEN71_RS24845 0.34 -0.6 5,526,691 + QEN71_RS24845 0.34 -0.9 5,526,691 + QEN71_RS24845 0.34 -0.6 5,526,691 + QEN71_RS24845 0.34 -0.1 5,526,692 - QEN71_RS24845 0.34 -0.1 5,526,692 - QEN71_RS24845 0.34 -0.7 5,526,692 - QEN71_RS24845 0.34 +0.8 5,526,692 - QEN71_RS24845 0.34 +0.6 5,526,692 - QEN71_RS24845 0.34 -0.9 5,526,729 + QEN71_RS24845 0.36 -0.7 5,526,729 + QEN71_RS24845 0.36 -0.2 5,526,729 + QEN71_RS24845 0.36 +0.4 5,526,729 + QEN71_RS24845 0.36 -0.2 5,526,729 + QEN71_RS24845 0.36 +0.4 5,526,730 - QEN71_RS24845 0.37 -0.4 5,526,730 - QEN71_RS24845 0.37 +0.5 5,526,730 - QEN71_RS24845 0.37 +0.3 5,526,730 - QEN71_RS24845 0.37 -0.2 5,526,730 - QEN71_RS24845 0.37 -1.0 5,526,730 - QEN71_RS24845 0.37 -0.6 5,526,730 - QEN71_RS24845 0.37 -0.9 5,526,741 - QEN71_RS24845 0.37 +0.2 5,527,071 + QEN71_RS24845 0.62 +0.6 5,527,071 + QEN71_RS24845 0.62 +0.4 5,527,071 + QEN71_RS24845 0.62 -0.4 5,527,071 + QEN71_RS24845 0.62 -0.5 5,527,071 + QEN71_RS24845 0.62 +0.5 5,527,071 + QEN71_RS24845 0.62 +0.0 5,527,071 + QEN71_RS24845 0.62 -0.4 5,527,071 + QEN71_RS24845 0.62 +0.7 5,527,071 + QEN71_RS24845 0.62 -0.9 5,527,071 + QEN71_RS24845 0.62 -0.1 5,527,072 - QEN71_RS24845 0.62 +0.1 5,527,072 - QEN71_RS24845 0.62 +0.1 5,527,072 - QEN71_RS24845 0.62 +0.2 5,527,072 - QEN71_RS24845 0.62 -0.3 5,527,072 - QEN71_RS24845 0.62 -0.4 5,527,072 - QEN71_RS24845 0.62 -0.0 5,527,072 - QEN71_RS24845 0.62 -0.4 5,527,072 - QEN71_RS24845 0.62 +0.1 5,527,072 - QEN71_RS24845 0.62 -0.1 5,527,265 + QEN71_RS24845 0.77 +0.7 5,527,266 - QEN71_RS24845 0.77 -0.5 5,527,266 - QEN71_RS24845 0.77 -0.3 5,527,323 + QEN71_RS24845 0.81 -1.6 5,527,323 + QEN71_RS24845 0.81 -1.0 5,527,323 + QEN71_RS24845 0.81 +0.9 5,527,323 + QEN71_RS24845 0.81 -0.4 5,527,324 - QEN71_RS24845 0.81 +0.1 5,527,324 - QEN71_RS24845 0.81 -0.7 5,527,324 - QEN71_RS24845 0.81 +1.1 5,527,401 + QEN71_RS24845 0.87 -0.6 5,527,401 + QEN71_RS24845 0.87 -1.8 5,527,401 + QEN71_RS24845 0.87 +0.3 5,527,401 + QEN71_RS24845 0.87 -0.2 5,527,401 + QEN71_RS24845 0.87 +0.4 5,527,401 + QEN71_RS24845 0.87 +0.1 5,527,401 + QEN71_RS24845 0.87 +1.1 5,527,402 - QEN71_RS24845 0.87 +0.0 5,527,402 - QEN71_RS24845 0.87 +0.9 5,527,402 - QEN71_RS24845 0.87 +0.0 5,527,402 - QEN71_RS24845 0.87 +0.4 5,527,402 - QEN71_RS24845 0.87 +0.5 5,527,451 - -0.3 5,527,451 - -0.4 5,527,451 - -0.2 5,527,492 + +0.3 5,527,493 - -0.3 5,527,493 - -0.1 5,527,493 - -0.1 5,527,601 + +0.2 5,527,601 + +0.2 5,527,601 + -0.3 5,527,601 + -0.1 5,527,601 + -0.7 5,527,601 + -0.4 5,527,602 - +0.1 5,527,602 - -1.3 5,527,602 - +0.2 5,527,709 + QEN71_RS24850 0.21 +0.1 5,527,710 - QEN71_RS24850 0.21 -2.1 5,527,933 + QEN71_RS24850 0.52 +0.7 5,527,934 - QEN71_RS24850 0.52 +1.5 5,527,985 + QEN71_RS24850 0.59 -0.9 5,527,985 + QEN71_RS24850 0.59 +0.3 5,527,985 + QEN71_RS24850 0.59 -0.1 5,528,222 + +0.7 5,528,223 - +0.9 5,528,277 + -0.8 5,528,295 + +0.2 5,528,295 + -0.2 5,528,295 + -0.3 5,528,296 - -0.1 5,528,296 - +1.8 5,528,371 + -1.9 5,528,371 + +0.1 5,528,371 + -0.9 5,528,371 + -0.9 5,528,371 + +0.4 5,528,371 + +0.3 5,528,372 - -0.7 5,528,372 - -0.3 5,528,372 - +1.1 5,528,372 - -2.5 5,528,372 - -0.1 5,528,372 - +0.3 5,528,372 - -0.1 5,528,372 - -0.1 5,528,372 - -0.4 5,528,372 - +1.4 5,528,372 - +0.6 5,528,397 - -0.4 5,528,397 - -0.6 5,528,397 - -0.8 5,528,402 + +0.1 5,528,403 - +0.2 5,528,403 - -0.5 5,528,427 + -1.8 5,528,427 + -1.7 5,528,428 - +0.9 5,528,428 - -0.6 5,528,428 - +0.2 5,528,428 - +0.1 5,528,428 - -0.2 5,528,439 + -1.2 5,528,486 + +0.5 5,528,486 + +0.2 5,528,486 + +1.7 5,528,486 + -0.3 5,528,487 - -1.6 5,528,487 - -0.7 5,528,487 - -0.4 5,528,487 - -0.2 5,528,506 + +0.6 5,528,506 + -0.2 5,528,506 + +0.1 5,528,506 + -0.6 5,528,506 + -0.5 5,528,506 + +0.1 5,528,507 - -2.3 5,528,507 - -0.8 5,528,507 - -1.4 5,528,507 - -1.3 5,528,507 - +0.9
Or see this region's nucleotide sequence