Experiment: Fumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS22890 and QEN71_RS22895 are separated by 57 nucleotides QEN71_RS22895 and QEN71_RS22900 are separated by 374 nucleotides
QEN71_RS22890: QEN71_RS22890 - GNVR domain-containing protein, at 5,084,244 to 5,086,496
_RS22890
QEN71_RS22895: QEN71_RS22895 - polysaccharide biosynthesis/export family protein, at 5,086,554 to 5,087,642
_RS22895
QEN71_RS22900: QEN71_RS22900 - sugar transferase, at 5,088,017 to 5,089,084
_RS22900
Position (kb) 5086
5087
5088 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5085.571 kb on + strand, within QEN71_RS22890 at 5085.572 kb on - strand, within QEN71_RS22890 at 5085.572 kb on - strand, within QEN71_RS22890 at 5085.682 kb on + strand, within QEN71_RS22890 at 5085.682 kb on + strand, within QEN71_RS22890 at 5085.682 kb on + strand, within QEN71_RS22890 at 5085.683 kb on - strand, within QEN71_RS22890 at 5085.683 kb on - strand, within QEN71_RS22890 at 5085.683 kb on - strand, within QEN71_RS22890 at 5085.683 kb on - strand, within QEN71_RS22890 at 5085.683 kb on - strand, within QEN71_RS22890 at 5085.683 kb on - strand, within QEN71_RS22890 at 5085.964 kb on + strand, within QEN71_RS22890 at 5085.964 kb on + strand, within QEN71_RS22890 at 5085.964 kb on + strand, within QEN71_RS22890 at 5085.965 kb on - strand, within QEN71_RS22890 at 5085.982 kb on + strand, within QEN71_RS22890 at 5085.982 kb on + strand, within QEN71_RS22890 at 5085.983 kb on - strand, within QEN71_RS22890 at 5085.983 kb on - strand, within QEN71_RS22890 at 5085.983 kb on - strand, within QEN71_RS22890 at 5085.983 kb on - strand, within QEN71_RS22890 at 5085.983 kb on - strand, within QEN71_RS22890 at 5086.132 kb on + strand, within QEN71_RS22890 at 5086.133 kb on - strand, within QEN71_RS22890 at 5086.153 kb on + strand, within QEN71_RS22890 at 5086.153 kb on + strand, within QEN71_RS22890 at 5086.153 kb on + strand, within QEN71_RS22890 at 5086.154 kb on - strand, within QEN71_RS22890 at 5086.154 kb on - strand, within QEN71_RS22890 at 5086.361 kb on + strand at 5086.402 kb on + strand at 5086.402 kb on + strand at 5086.403 kb on - strand at 5086.403 kb on - strand at 5086.430 kb on - strand at 5086.473 kb on + strand at 5086.474 kb on - strand at 5086.481 kb on - strand at 5086.481 kb on - strand at 5086.544 kb on + strand at 5086.546 kb on + strand at 5086.546 kb on + strand at 5086.546 kb on + strand at 5086.546 kb on + strand at 5086.546 kb on + strand at 5086.546 kb on + strand at 5086.546 kb on + strand at 5086.546 kb on + strand at 5086.547 kb on - strand at 5086.547 kb on - strand at 5086.547 kb on - strand at 5086.547 kb on - strand at 5086.547 kb on - strand at 5086.547 kb on - strand at 5086.547 kb on - strand at 5086.547 kb on - strand at 5086.547 kb on - strand at 5086.547 kb on - strand at 5086.726 kb on + strand, within QEN71_RS22895 at 5086.726 kb on + strand, within QEN71_RS22895 at 5086.727 kb on - strand, within QEN71_RS22895 at 5086.755 kb on - strand, within QEN71_RS22895 at 5086.765 kb on + strand, within QEN71_RS22895 at 5086.765 kb on + strand, within QEN71_RS22895 at 5086.765 kb on + strand, within QEN71_RS22895 at 5086.765 kb on + strand, within QEN71_RS22895 at 5086.765 kb on + strand, within QEN71_RS22895 at 5086.766 kb on - strand, within QEN71_RS22895 at 5086.766 kb on - strand, within QEN71_RS22895 at 5086.766 kb on - strand, within QEN71_RS22895 at 5086.766 kb on - strand, within QEN71_RS22895 at 5086.766 kb on - strand, within QEN71_RS22895 at 5086.766 kb on - strand, within QEN71_RS22895 at 5086.766 kb on - strand, within QEN71_RS22895 at 5086.913 kb on - strand, within QEN71_RS22895 at 5086.983 kb on + strand, within QEN71_RS22895 at 5086.983 kb on + strand, within QEN71_RS22895 at 5086.983 kb on + strand, within QEN71_RS22895 at 5087.197 kb on + strand, within QEN71_RS22895 at 5087.198 kb on - strand, within QEN71_RS22895 at 5087.272 kb on + strand, within QEN71_RS22895 at 5087.273 kb on - strand, within QEN71_RS22895 at 5087.273 kb on - strand, within QEN71_RS22895 at 5087.273 kb on - strand, within QEN71_RS22895 at 5087.429 kb on - strand, within QEN71_RS22895 at 5087.621 kb on + strand at 5087.621 kb on + strand at 5087.621 kb on + strand at 5087.621 kb on + strand at 5087.621 kb on + strand at 5087.622 kb on - strand at 5087.622 kb on - strand at 5087.622 kb on - strand at 5087.622 kb on - strand at 5087.622 kb on - strand at 5087.623 kb on + strand at 5087.624 kb on - strand at 5087.635 kb on + strand at 5087.636 kb on - strand at 5087.912 kb on - strand at 5087.912 kb on - strand at 5087.914 kb on - strand at 5087.914 kb on - strand at 5088.022 kb on - strand at 5088.102 kb on + strand at 5088.102 kb on + strand at 5088.103 kb on - strand at 5088.103 kb on - strand at 5088.103 kb on - strand at 5088.103 kb on - strand at 5088.132 kb on + strand, within QEN71_RS22900 at 5088.132 kb on + strand, within QEN71_RS22900 at 5088.133 kb on - strand, within QEN71_RS22900 at 5088.133 kb on - strand, within QEN71_RS22900 at 5088.195 kb on + strand, within QEN71_RS22900 at 5088.196 kb on - strand, within QEN71_RS22900 at 5088.196 kb on - strand, within QEN71_RS22900 at 5088.196 kb on - strand, within QEN71_RS22900 at 5088.198 kb on + strand, within QEN71_RS22900 at 5088.198 kb on + strand, within QEN71_RS22900 at 5088.198 kb on + strand, within QEN71_RS22900 at 5088.199 kb on - strand, within QEN71_RS22900 at 5088.199 kb on - strand, within QEN71_RS22900 at 5088.199 kb on - strand, within QEN71_RS22900 at 5088.216 kb on + strand, within QEN71_RS22900 at 5088.505 kb on - strand, within QEN71_RS22900
Per-strain Table
Position Strand Gene LocusTag Fraction Fumaric (C) remove 5,085,571 + QEN71_RS22890 0.59 +1.5 5,085,572 - QEN71_RS22890 0.59 -1.8 5,085,572 - QEN71_RS22890 0.59 +0.9 5,085,682 + QEN71_RS22890 0.64 -0.9 5,085,682 + QEN71_RS22890 0.64 -0.5 5,085,682 + QEN71_RS22890 0.64 +0.9 5,085,683 - QEN71_RS22890 0.64 +1.1 5,085,683 - QEN71_RS22890 0.64 +0.1 5,085,683 - QEN71_RS22890 0.64 -0.7 5,085,683 - QEN71_RS22890 0.64 -0.4 5,085,683 - QEN71_RS22890 0.64 -0.5 5,085,683 - QEN71_RS22890 0.64 +0.7 5,085,964 + QEN71_RS22890 0.76 +0.1 5,085,964 + QEN71_RS22890 0.76 -0.1 5,085,964 + QEN71_RS22890 0.76 +0.0 5,085,965 - QEN71_RS22890 0.76 -1.0 5,085,982 + QEN71_RS22890 0.77 +0.3 5,085,982 + QEN71_RS22890 0.77 +0.1 5,085,983 - QEN71_RS22890 0.77 +0.2 5,085,983 - QEN71_RS22890 0.77 +0.5 5,085,983 - QEN71_RS22890 0.77 +1.7 5,085,983 - QEN71_RS22890 0.77 -0.7 5,085,983 - QEN71_RS22890 0.77 +0.1 5,086,132 + QEN71_RS22890 0.84 -0.3 5,086,133 - QEN71_RS22890 0.84 +0.1 5,086,153 + QEN71_RS22890 0.85 +0.9 5,086,153 + QEN71_RS22890 0.85 -0.6 5,086,153 + QEN71_RS22890 0.85 +1.1 5,086,154 - QEN71_RS22890 0.85 +0.0 5,086,154 - QEN71_RS22890 0.85 -1.4 5,086,361 + +0.0 5,086,402 + -0.3 5,086,402 + +1.5 5,086,403 - -0.1 5,086,403 - -0.1 5,086,430 - -1.2 5,086,473 + -1.5 5,086,474 - +0.2 5,086,481 - +0.7 5,086,481 - -0.3 5,086,544 + +0.3 5,086,546 + -0.1 5,086,546 + +0.4 5,086,546 + -0.3 5,086,546 + +0.0 5,086,546 + -0.6 5,086,546 + +1.6 5,086,546 + -0.4 5,086,546 + +1.3 5,086,547 - -0.5 5,086,547 - +0.2 5,086,547 - -1.1 5,086,547 - +0.4 5,086,547 - -0.2 5,086,547 - +0.1 5,086,547 - +1.2 5,086,547 - -0.1 5,086,547 - -0.4 5,086,547 - +0.5 5,086,726 + QEN71_RS22895 0.16 +0.6 5,086,726 + QEN71_RS22895 0.16 +0.1 5,086,727 - QEN71_RS22895 0.16 -0.0 5,086,755 - QEN71_RS22895 0.18 +0.5 5,086,765 + QEN71_RS22895 0.19 -0.1 5,086,765 + QEN71_RS22895 0.19 -1.4 5,086,765 + QEN71_RS22895 0.19 +0.5 5,086,765 + QEN71_RS22895 0.19 -0.5 5,086,765 + QEN71_RS22895 0.19 +0.1 5,086,766 - QEN71_RS22895 0.19 -0.8 5,086,766 - QEN71_RS22895 0.19 -0.4 5,086,766 - QEN71_RS22895 0.19 +0.2 5,086,766 - QEN71_RS22895 0.19 -0.4 5,086,766 - QEN71_RS22895 0.19 -0.2 5,086,766 - QEN71_RS22895 0.19 +0.3 5,086,766 - QEN71_RS22895 0.19 +1.1 5,086,913 - QEN71_RS22895 0.33 +0.4 5,086,983 + QEN71_RS22895 0.39 -0.0 5,086,983 + QEN71_RS22895 0.39 -2.7 5,086,983 + QEN71_RS22895 0.39 +1.7 5,087,197 + QEN71_RS22895 0.59 -1.2 5,087,198 - QEN71_RS22895 0.59 -0.4 5,087,272 + QEN71_RS22895 0.66 +2.2 5,087,273 - QEN71_RS22895 0.66 -0.1 5,087,273 - QEN71_RS22895 0.66 +1.4 5,087,273 - QEN71_RS22895 0.66 +0.8 5,087,429 - QEN71_RS22895 0.80 +1.0 5,087,621 + -1.1 5,087,621 + +0.5 5,087,621 + -0.2 5,087,621 + -1.0 5,087,621 + -1.0 5,087,622 - -0.1 5,087,622 - +0.1 5,087,622 - -0.4 5,087,622 - +3.2 5,087,622 - +0.8 5,087,623 + +1.7 5,087,624 - +0.5 5,087,635 + -1.3 5,087,636 - -0.9 5,087,912 - +0.5 5,087,912 - +0.1 5,087,914 - -0.4 5,087,914 - -0.2 5,088,022 - -2.7 5,088,102 + +0.2 5,088,102 + -0.6 5,088,103 - +0.1 5,088,103 - -0.1 5,088,103 - -0.4 5,088,103 - -1.7 5,088,132 + QEN71_RS22900 0.11 +0.0 5,088,132 + QEN71_RS22900 0.11 -0.1 5,088,133 - QEN71_RS22900 0.11 -0.3 5,088,133 - QEN71_RS22900 0.11 -0.5 5,088,195 + QEN71_RS22900 0.17 -0.3 5,088,196 - QEN71_RS22900 0.17 -0.1 5,088,196 - QEN71_RS22900 0.17 +0.2 5,088,196 - QEN71_RS22900 0.17 +1.4 5,088,198 + QEN71_RS22900 0.17 -0.8 5,088,198 + QEN71_RS22900 0.17 -1.8 5,088,198 + QEN71_RS22900 0.17 -0.6 5,088,199 - QEN71_RS22900 0.17 +1.9 5,088,199 - QEN71_RS22900 0.17 -1.7 5,088,199 - QEN71_RS22900 0.17 -0.7 5,088,216 + QEN71_RS22900 0.19 -0.2 5,088,505 - QEN71_RS22900 0.46 +0.9
Or see this region's nucleotide sequence