Experiment: Fumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS22885 and QEN71_RS22890 are separated by 462 nucleotides QEN71_RS22890 and QEN71_RS22895 are separated by 57 nucleotides
QEN71_RS22885: QEN71_RS22885 - acyltransferase, at 5,082,747 to 5,083,781
_RS22885
QEN71_RS22890: QEN71_RS22890 - GNVR domain-containing protein, at 5,084,244 to 5,086,496
_RS22890
QEN71_RS22895: QEN71_RS22895 - polysaccharide biosynthesis/export family protein, at 5,086,554 to 5,087,642
_RS22895
Position (kb) 5084
5085
5086
5087 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5083.272 kb on + strand, within QEN71_RS22885 at 5083.272 kb on + strand, within QEN71_RS22885 at 5083.272 kb on + strand, within QEN71_RS22885 at 5083.272 kb on + strand, within QEN71_RS22885 at 5083.272 kb on + strand, within QEN71_RS22885 at 5083.273 kb on - strand, within QEN71_RS22885 at 5083.273 kb on - strand, within QEN71_RS22885 at 5083.273 kb on - strand, within QEN71_RS22885 at 5083.273 kb on - strand, within QEN71_RS22885 at 5083.279 kb on - strand, within QEN71_RS22885 at 5083.317 kb on + strand, within QEN71_RS22885 at 5083.344 kb on - strand, within QEN71_RS22885 at 5083.383 kb on + strand, within QEN71_RS22885 at 5083.383 kb on + strand, within QEN71_RS22885 at 5083.384 kb on - strand, within QEN71_RS22885 at 5083.384 kb on - strand, within QEN71_RS22885 at 5083.384 kb on - strand, within QEN71_RS22885 at 5083.384 kb on - strand, within QEN71_RS22885 at 5083.384 kb on - strand, within QEN71_RS22885 at 5083.387 kb on + strand, within QEN71_RS22885 at 5083.387 kb on + strand, within QEN71_RS22885 at 5083.388 kb on - strand, within QEN71_RS22885 at 5083.388 kb on - strand, within QEN71_RS22885 at 5083.388 kb on - strand, within QEN71_RS22885 at 5083.398 kb on + strand, within QEN71_RS22885 at 5083.398 kb on + strand, within QEN71_RS22885 at 5083.398 kb on + strand, within QEN71_RS22885 at 5083.399 kb on - strand, within QEN71_RS22885 at 5083.399 kb on - strand, within QEN71_RS22885 at 5083.399 kb on - strand, within QEN71_RS22885 at 5083.399 kb on - strand, within QEN71_RS22885 at 5083.437 kb on + strand, within QEN71_RS22885 at 5083.438 kb on - strand, within QEN71_RS22885 at 5083.545 kb on + strand, within QEN71_RS22885 at 5083.545 kb on + strand, within QEN71_RS22885 at 5083.545 kb on + strand, within QEN71_RS22885 at 5083.545 kb on + strand, within QEN71_RS22885 at 5083.554 kb on + strand, within QEN71_RS22885 at 5083.554 kb on + strand, within QEN71_RS22885 at 5083.555 kb on - strand, within QEN71_RS22885 at 5083.686 kb on + strand at 5083.687 kb on - strand at 5083.780 kb on - strand at 5083.995 kb on + strand at 5083.996 kb on - strand at 5084.181 kb on + strand at 5084.181 kb on + strand at 5084.182 kb on - strand at 5084.182 kb on - strand at 5084.182 kb on - strand at 5084.182 kb on - strand at 5084.300 kb on - strand at 5084.300 kb on - strand at 5084.309 kb on - strand at 5084.314 kb on + strand at 5084.314 kb on + strand at 5084.314 kb on + strand at 5084.314 kb on + strand at 5084.315 kb on - strand at 5084.315 kb on - strand at 5084.323 kb on + strand at 5084.335 kb on + strand at 5084.336 kb on - strand at 5084.543 kb on - strand, within QEN71_RS22890 at 5084.582 kb on + strand, within QEN71_RS22890 at 5084.583 kb on - strand, within QEN71_RS22890 at 5084.583 kb on - strand, within QEN71_RS22890 at 5084.614 kb on + strand, within QEN71_RS22890 at 5084.614 kb on + strand, within QEN71_RS22890 at 5084.615 kb on - strand, within QEN71_RS22890 at 5084.661 kb on + strand, within QEN71_RS22890 at 5084.728 kb on + strand, within QEN71_RS22890 at 5084.728 kb on + strand, within QEN71_RS22890 at 5084.728 kb on + strand, within QEN71_RS22890 at 5084.728 kb on + strand, within QEN71_RS22890 at 5084.728 kb on + strand, within QEN71_RS22890 at 5084.729 kb on - strand, within QEN71_RS22890 at 5084.729 kb on - strand, within QEN71_RS22890 at 5084.729 kb on - strand, within QEN71_RS22890 at 5084.828 kb on + strand, within QEN71_RS22890 at 5084.828 kb on + strand, within QEN71_RS22890 at 5084.829 kb on - strand, within QEN71_RS22890 at 5084.829 kb on - strand, within QEN71_RS22890 at 5085.037 kb on + strand, within QEN71_RS22890 at 5085.283 kb on + strand, within QEN71_RS22890 at 5085.283 kb on + strand, within QEN71_RS22890 at 5085.283 kb on + strand, within QEN71_RS22890 at 5085.284 kb on - strand, within QEN71_RS22890 at 5085.284 kb on - strand, within QEN71_RS22890 at 5085.284 kb on - strand, within QEN71_RS22890 at 5085.284 kb on - strand, within QEN71_RS22890 at 5085.284 kb on - strand, within QEN71_RS22890 at 5085.284 kb on - strand, within QEN71_RS22890 at 5085.284 kb on - strand, within QEN71_RS22890 at 5085.439 kb on + strand, within QEN71_RS22890 at 5085.439 kb on + strand, within QEN71_RS22890 at 5085.439 kb on + strand, within QEN71_RS22890 at 5085.440 kb on - strand, within QEN71_RS22890 at 5085.440 kb on - strand, within QEN71_RS22890 at 5085.571 kb on + strand, within QEN71_RS22890 at 5085.572 kb on - strand, within QEN71_RS22890 at 5085.572 kb on - strand, within QEN71_RS22890 at 5085.682 kb on + strand, within QEN71_RS22890 at 5085.682 kb on + strand, within QEN71_RS22890 at 5085.682 kb on + strand, within QEN71_RS22890 at 5085.683 kb on - strand, within QEN71_RS22890 at 5085.683 kb on - strand, within QEN71_RS22890 at 5085.683 kb on - strand, within QEN71_RS22890 at 5085.683 kb on - strand, within QEN71_RS22890 at 5085.683 kb on - strand, within QEN71_RS22890 at 5085.683 kb on - strand, within QEN71_RS22890 at 5085.964 kb on + strand, within QEN71_RS22890 at 5085.964 kb on + strand, within QEN71_RS22890 at 5085.964 kb on + strand, within QEN71_RS22890 at 5085.965 kb on - strand, within QEN71_RS22890 at 5085.982 kb on + strand, within QEN71_RS22890 at 5085.982 kb on + strand, within QEN71_RS22890 at 5085.983 kb on - strand, within QEN71_RS22890 at 5085.983 kb on - strand, within QEN71_RS22890 at 5085.983 kb on - strand, within QEN71_RS22890 at 5085.983 kb on - strand, within QEN71_RS22890 at 5085.983 kb on - strand, within QEN71_RS22890 at 5086.132 kb on + strand, within QEN71_RS22890 at 5086.133 kb on - strand, within QEN71_RS22890 at 5086.153 kb on + strand, within QEN71_RS22890 at 5086.153 kb on + strand, within QEN71_RS22890 at 5086.153 kb on + strand, within QEN71_RS22890 at 5086.154 kb on - strand, within QEN71_RS22890 at 5086.154 kb on - strand, within QEN71_RS22890 at 5086.361 kb on + strand at 5086.402 kb on + strand at 5086.402 kb on + strand at 5086.403 kb on - strand at 5086.403 kb on - strand at 5086.430 kb on - strand at 5086.473 kb on + strand at 5086.474 kb on - strand at 5086.481 kb on - strand at 5086.481 kb on - strand at 5086.544 kb on + strand at 5086.546 kb on + strand at 5086.546 kb on + strand at 5086.546 kb on + strand at 5086.546 kb on + strand at 5086.546 kb on + strand at 5086.546 kb on + strand at 5086.546 kb on + strand at 5086.546 kb on + strand at 5086.547 kb on - strand at 5086.547 kb on - strand at 5086.547 kb on - strand at 5086.547 kb on - strand at 5086.547 kb on - strand at 5086.547 kb on - strand at 5086.547 kb on - strand at 5086.547 kb on - strand at 5086.547 kb on - strand at 5086.547 kb on - strand at 5086.726 kb on + strand, within QEN71_RS22895 at 5086.726 kb on + strand, within QEN71_RS22895 at 5086.727 kb on - strand, within QEN71_RS22895 at 5086.755 kb on - strand, within QEN71_RS22895 at 5086.765 kb on + strand, within QEN71_RS22895 at 5086.765 kb on + strand, within QEN71_RS22895 at 5086.765 kb on + strand, within QEN71_RS22895 at 5086.765 kb on + strand, within QEN71_RS22895 at 5086.765 kb on + strand, within QEN71_RS22895 at 5086.766 kb on - strand, within QEN71_RS22895 at 5086.766 kb on - strand, within QEN71_RS22895 at 5086.766 kb on - strand, within QEN71_RS22895 at 5086.766 kb on - strand, within QEN71_RS22895 at 5086.766 kb on - strand, within QEN71_RS22895 at 5086.766 kb on - strand, within QEN71_RS22895 at 5086.766 kb on - strand, within QEN71_RS22895 at 5086.913 kb on - strand, within QEN71_RS22895 at 5086.983 kb on + strand, within QEN71_RS22895 at 5086.983 kb on + strand, within QEN71_RS22895 at 5086.983 kb on + strand, within QEN71_RS22895 at 5087.197 kb on + strand, within QEN71_RS22895 at 5087.198 kb on - strand, within QEN71_RS22895 at 5087.272 kb on + strand, within QEN71_RS22895 at 5087.273 kb on - strand, within QEN71_RS22895 at 5087.273 kb on - strand, within QEN71_RS22895 at 5087.273 kb on - strand, within QEN71_RS22895 at 5087.429 kb on - strand, within QEN71_RS22895
Per-strain Table
Position Strand Gene LocusTag Fraction Fumaric (C) remove 5,083,272 + QEN71_RS22885 0.51 +0.3 5,083,272 + QEN71_RS22885 0.51 -0.8 5,083,272 + QEN71_RS22885 0.51 -1.7 5,083,272 + QEN71_RS22885 0.51 +0.8 5,083,272 + QEN71_RS22885 0.51 -1.2 5,083,273 - QEN71_RS22885 0.51 +0.6 5,083,273 - QEN71_RS22885 0.51 -0.9 5,083,273 - QEN71_RS22885 0.51 +0.1 5,083,273 - QEN71_RS22885 0.51 +1.1 5,083,279 - QEN71_RS22885 0.51 -2.3 5,083,317 + QEN71_RS22885 0.55 -1.0 5,083,344 - QEN71_RS22885 0.58 -0.2 5,083,383 + QEN71_RS22885 0.61 -0.1 5,083,383 + QEN71_RS22885 0.61 +1.5 5,083,384 - QEN71_RS22885 0.62 +0.2 5,083,384 - QEN71_RS22885 0.62 +0.0 5,083,384 - QEN71_RS22885 0.62 -0.6 5,083,384 - QEN71_RS22885 0.62 +0.3 5,083,384 - QEN71_RS22885 0.62 +1.7 5,083,387 + QEN71_RS22885 0.62 -0.7 5,083,387 + QEN71_RS22885 0.62 +1.1 5,083,388 - QEN71_RS22885 0.62 +0.3 5,083,388 - QEN71_RS22885 0.62 -0.7 5,083,388 - QEN71_RS22885 0.62 +0.5 5,083,398 + QEN71_RS22885 0.63 -0.8 5,083,398 + QEN71_RS22885 0.63 -0.1 5,083,398 + QEN71_RS22885 0.63 -1.2 5,083,399 - QEN71_RS22885 0.63 -0.1 5,083,399 - QEN71_RS22885 0.63 +0.3 5,083,399 - QEN71_RS22885 0.63 -2.2 5,083,399 - QEN71_RS22885 0.63 +0.0 5,083,437 + QEN71_RS22885 0.67 -1.5 5,083,438 - QEN71_RS22885 0.67 -0.3 5,083,545 + QEN71_RS22885 0.77 -1.5 5,083,545 + QEN71_RS22885 0.77 +0.3 5,083,545 + QEN71_RS22885 0.77 -0.4 5,083,545 + QEN71_RS22885 0.77 -0.5 5,083,554 + QEN71_RS22885 0.78 -0.5 5,083,554 + QEN71_RS22885 0.78 -0.1 5,083,555 - QEN71_RS22885 0.78 +0.5 5,083,686 + -0.1 5,083,687 - +0.1 5,083,780 - -0.9 5,083,995 + -0.2 5,083,996 - -1.1 5,084,181 + -0.3 5,084,181 + -0.9 5,084,182 - -2.0 5,084,182 - -0.6 5,084,182 - +1.3 5,084,182 - +0.1 5,084,300 - -0.3 5,084,300 - +0.8 5,084,309 - -1.5 5,084,314 + +0.2 5,084,314 + +0.7 5,084,314 + +0.0 5,084,314 + -0.1 5,084,315 - -0.3 5,084,315 - +0.1 5,084,323 + +0.5 5,084,335 + -0.3 5,084,336 - -0.4 5,084,543 - QEN71_RS22890 0.13 +0.6 5,084,582 + QEN71_RS22890 0.15 +0.5 5,084,583 - QEN71_RS22890 0.15 +0.7 5,084,583 - QEN71_RS22890 0.15 +0.8 5,084,614 + QEN71_RS22890 0.16 -0.9 5,084,614 + QEN71_RS22890 0.16 +0.9 5,084,615 - QEN71_RS22890 0.16 -0.9 5,084,661 + QEN71_RS22890 0.19 +0.5 5,084,728 + QEN71_RS22890 0.21 -0.4 5,084,728 + QEN71_RS22890 0.21 -0.5 5,084,728 + QEN71_RS22890 0.21 -1.2 5,084,728 + QEN71_RS22890 0.21 -0.3 5,084,728 + QEN71_RS22890 0.21 -0.6 5,084,729 - QEN71_RS22890 0.22 +1.0 5,084,729 - QEN71_RS22890 0.22 -0.9 5,084,729 - QEN71_RS22890 0.22 -0.5 5,084,828 + QEN71_RS22890 0.26 -0.5 5,084,828 + QEN71_RS22890 0.26 -0.1 5,084,829 - QEN71_RS22890 0.26 +0.4 5,084,829 - QEN71_RS22890 0.26 +0.5 5,085,037 + QEN71_RS22890 0.35 -0.1 5,085,283 + QEN71_RS22890 0.46 +0.6 5,085,283 + QEN71_RS22890 0.46 -0.9 5,085,283 + QEN71_RS22890 0.46 -1.5 5,085,284 - QEN71_RS22890 0.46 -0.7 5,085,284 - QEN71_RS22890 0.46 -1.4 5,085,284 - QEN71_RS22890 0.46 -1.7 5,085,284 - QEN71_RS22890 0.46 -0.5 5,085,284 - QEN71_RS22890 0.46 -0.3 5,085,284 - QEN71_RS22890 0.46 -0.4 5,085,284 - QEN71_RS22890 0.46 +1.3 5,085,439 + QEN71_RS22890 0.53 -1.0 5,085,439 + QEN71_RS22890 0.53 -0.9 5,085,439 + QEN71_RS22890 0.53 -1.3 5,085,440 - QEN71_RS22890 0.53 -0.5 5,085,440 - QEN71_RS22890 0.53 -1.4 5,085,571 + QEN71_RS22890 0.59 +1.5 5,085,572 - QEN71_RS22890 0.59 -1.8 5,085,572 - QEN71_RS22890 0.59 +0.9 5,085,682 + QEN71_RS22890 0.64 -0.9 5,085,682 + QEN71_RS22890 0.64 -0.5 5,085,682 + QEN71_RS22890 0.64 +0.9 5,085,683 - QEN71_RS22890 0.64 +1.1 5,085,683 - QEN71_RS22890 0.64 +0.1 5,085,683 - QEN71_RS22890 0.64 -0.7 5,085,683 - QEN71_RS22890 0.64 -0.4 5,085,683 - QEN71_RS22890 0.64 -0.5 5,085,683 - QEN71_RS22890 0.64 +0.7 5,085,964 + QEN71_RS22890 0.76 +0.1 5,085,964 + QEN71_RS22890 0.76 -0.1 5,085,964 + QEN71_RS22890 0.76 +0.0 5,085,965 - QEN71_RS22890 0.76 -1.0 5,085,982 + QEN71_RS22890 0.77 +0.3 5,085,982 + QEN71_RS22890 0.77 +0.1 5,085,983 - QEN71_RS22890 0.77 +0.2 5,085,983 - QEN71_RS22890 0.77 +0.5 5,085,983 - QEN71_RS22890 0.77 +1.7 5,085,983 - QEN71_RS22890 0.77 -0.7 5,085,983 - QEN71_RS22890 0.77 +0.1 5,086,132 + QEN71_RS22890 0.84 -0.3 5,086,133 - QEN71_RS22890 0.84 +0.1 5,086,153 + QEN71_RS22890 0.85 +0.9 5,086,153 + QEN71_RS22890 0.85 -0.6 5,086,153 + QEN71_RS22890 0.85 +1.1 5,086,154 - QEN71_RS22890 0.85 +0.0 5,086,154 - QEN71_RS22890 0.85 -1.4 5,086,361 + +0.0 5,086,402 + -0.3 5,086,402 + +1.5 5,086,403 - -0.1 5,086,403 - -0.1 5,086,430 - -1.2 5,086,473 + -1.5 5,086,474 - +0.2 5,086,481 - +0.7 5,086,481 - -0.3 5,086,544 + +0.3 5,086,546 + -0.1 5,086,546 + +0.4 5,086,546 + -0.3 5,086,546 + +0.0 5,086,546 + -0.6 5,086,546 + +1.6 5,086,546 + -0.4 5,086,546 + +1.3 5,086,547 - -0.5 5,086,547 - +0.2 5,086,547 - -1.1 5,086,547 - +0.4 5,086,547 - -0.2 5,086,547 - +0.1 5,086,547 - +1.2 5,086,547 - -0.1 5,086,547 - -0.4 5,086,547 - +0.5 5,086,726 + QEN71_RS22895 0.16 +0.6 5,086,726 + QEN71_RS22895 0.16 +0.1 5,086,727 - QEN71_RS22895 0.16 -0.0 5,086,755 - QEN71_RS22895 0.18 +0.5 5,086,765 + QEN71_RS22895 0.19 -0.1 5,086,765 + QEN71_RS22895 0.19 -1.4 5,086,765 + QEN71_RS22895 0.19 +0.5 5,086,765 + QEN71_RS22895 0.19 -0.5 5,086,765 + QEN71_RS22895 0.19 +0.1 5,086,766 - QEN71_RS22895 0.19 -0.8 5,086,766 - QEN71_RS22895 0.19 -0.4 5,086,766 - QEN71_RS22895 0.19 +0.2 5,086,766 - QEN71_RS22895 0.19 -0.4 5,086,766 - QEN71_RS22895 0.19 -0.2 5,086,766 - QEN71_RS22895 0.19 +0.3 5,086,766 - QEN71_RS22895 0.19 +1.1 5,086,913 - QEN71_RS22895 0.33 +0.4 5,086,983 + QEN71_RS22895 0.39 -0.0 5,086,983 + QEN71_RS22895 0.39 -2.7 5,086,983 + QEN71_RS22895 0.39 +1.7 5,087,197 + QEN71_RS22895 0.59 -1.2 5,087,198 - QEN71_RS22895 0.59 -0.4 5,087,272 + QEN71_RS22895 0.66 +2.2 5,087,273 - QEN71_RS22895 0.66 -0.1 5,087,273 - QEN71_RS22895 0.66 +1.4 5,087,273 - QEN71_RS22895 0.66 +0.8 5,087,429 - QEN71_RS22895 0.80 +1.0
Or see this region's nucleotide sequence