Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS21805

Experiment: Fumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS21795 and QEN71_RS21800 are separated by 118 nucleotidesQEN71_RS21800 and QEN71_RS21805 are separated by 51 nucleotidesQEN71_RS21805 and QEN71_RS21810 are separated by 66 nucleotides QEN71_RS21795: QEN71_RS21795 - Rap1a/Tai family immunity protein, at 4,836,039 to 4,836,395 _RS21795 QEN71_RS21800: QEN71_RS21800 - ankyrin repeat domain-containing protein, at 4,836,514 to 4,837,260 _RS21800 QEN71_RS21805: QEN71_RS21805 - TatD family hydrolase, at 4,837,312 to 4,838,103 _RS21805 QEN71_RS21810: QEN71_RS21810 - DNA polymerase III subunit delta', at 4,838,170 to 4,839,219 _RS21810 Position (kb) 4837 4838 4839Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4836.515 kb on + strandat 4836.617 kb on + strand, within QEN71_RS21800at 4836.617 kb on + strand, within QEN71_RS21800at 4836.617 kb on + strand, within QEN71_RS21800at 4836.617 kb on + strand, within QEN71_RS21800at 4836.617 kb on + strand, within QEN71_RS21800at 4836.617 kb on + strand, within QEN71_RS21800at 4836.617 kb on + strand, within QEN71_RS21800at 4836.617 kb on + strand, within QEN71_RS21800at 4836.618 kb on - strand, within QEN71_RS21800at 4836.618 kb on - strand, within QEN71_RS21800at 4836.618 kb on - strand, within QEN71_RS21800at 4836.618 kb on - strand, within QEN71_RS21800at 4836.618 kb on - strand, within QEN71_RS21800at 4836.618 kb on - strand, within QEN71_RS21800at 4836.768 kb on + strand, within QEN71_RS21800at 4836.768 kb on + strand, within QEN71_RS21800at 4836.768 kb on + strand, within QEN71_RS21800at 4836.769 kb on - strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.770 kb on + strand, within QEN71_RS21800at 4836.771 kb on - strand, within QEN71_RS21800at 4836.771 kb on - strand, within QEN71_RS21800at 4836.771 kb on - strand, within QEN71_RS21800at 4836.771 kb on - strand, within QEN71_RS21800at 4836.771 kb on - strand, within QEN71_RS21800at 4836.771 kb on - strand, within QEN71_RS21800at 4836.771 kb on - strand, within QEN71_RS21800at 4836.771 kb on - strand, within QEN71_RS21800at 4836.771 kb on - strand, within QEN71_RS21800at 4836.827 kb on + strand, within QEN71_RS21800at 4836.827 kb on + strand, within QEN71_RS21800at 4836.827 kb on + strand, within QEN71_RS21800at 4836.828 kb on - strand, within QEN71_RS21800at 4836.828 kb on - strand, within QEN71_RS21800at 4836.828 kb on - strand, within QEN71_RS21800at 4837.261 kb on - strandat 4837.295 kb on - strandat 4837.424 kb on + strand, within QEN71_RS21805at 4837.424 kb on + strand, within QEN71_RS21805at 4837.424 kb on + strand, within QEN71_RS21805at 4837.424 kb on + strand, within QEN71_RS21805at 4837.425 kb on - strand, within QEN71_RS21805at 4837.425 kb on - strand, within QEN71_RS21805at 4837.433 kb on + strand, within QEN71_RS21805at 4837.433 kb on + strand, within QEN71_RS21805at 4837.433 kb on + strand, within QEN71_RS21805at 4837.433 kb on + strand, within QEN71_RS21805at 4837.434 kb on - strand, within QEN71_RS21805at 4837.434 kb on - strand, within QEN71_RS21805at 4837.434 kb on - strand, within QEN71_RS21805at 4837.434 kb on - strand, within QEN71_RS21805at 4837.434 kb on - strand, within QEN71_RS21805at 4837.434 kb on - strand, within QEN71_RS21805at 4837.434 kb on - strand, within QEN71_RS21805at 4837.434 kb on - strand, within QEN71_RS21805at 4837.434 kb on - strand, within QEN71_RS21805at 4837.434 kb on - strand, within QEN71_RS21805at 4837.434 kb on - strand, within QEN71_RS21805at 4837.434 kb on - strand, within QEN71_RS21805at 4837.479 kb on - strand, within QEN71_RS21805at 4837.479 kb on - strand, within QEN71_RS21805at 4837.583 kb on + strand, within QEN71_RS21805at 4837.583 kb on + strand, within QEN71_RS21805at 4837.583 kb on + strand, within QEN71_RS21805at 4837.584 kb on - strand, within QEN71_RS21805at 4837.584 kb on - strand, within QEN71_RS21805at 4837.584 kb on - strand, within QEN71_RS21805at 4837.584 kb on - strand, within QEN71_RS21805at 4837.710 kb on + strand, within QEN71_RS21805at 4837.710 kb on + strand, within QEN71_RS21805at 4837.711 kb on - strand, within QEN71_RS21805at 4837.711 kb on - strand, within QEN71_RS21805at 4837.711 kb on - strand, within QEN71_RS21805at 4837.711 kb on - strand, within QEN71_RS21805at 4837.752 kb on + strand, within QEN71_RS21805at 4837.753 kb on - strand, within QEN71_RS21805at 4837.786 kb on - strand, within QEN71_RS21805at 4837.814 kb on + strand, within QEN71_RS21805at 4837.814 kb on + strand, within QEN71_RS21805at 4837.814 kb on + strand, within QEN71_RS21805at 4837.817 kb on + strand, within QEN71_RS21805at 4837.817 kb on + strand, within QEN71_RS21805at 4837.817 kb on + strand, within QEN71_RS21805at 4837.817 kb on + strand, within QEN71_RS21805at 4837.817 kb on + strand, within QEN71_RS21805at 4837.818 kb on - strand, within QEN71_RS21805at 4837.818 kb on - strand, within QEN71_RS21805at 4837.818 kb on - strand, within QEN71_RS21805at 4837.818 kb on - strand, within QEN71_RS21805at 4837.818 kb on - strand, within QEN71_RS21805at 4837.818 kb on - strand, within QEN71_RS21805at 4837.934 kb on + strand, within QEN71_RS21805at 4837.934 kb on + strand, within QEN71_RS21805at 4837.934 kb on + strand, within QEN71_RS21805at 4837.934 kb on + strand, within QEN71_RS21805at 4837.934 kb on + strand, within QEN71_RS21805at 4837.934 kb on + strand, within QEN71_RS21805at 4837.934 kb on + strand, within QEN71_RS21805at 4837.934 kb on + strand, within QEN71_RS21805at 4837.934 kb on + strand, within QEN71_RS21805at 4837.934 kb on + strand, within QEN71_RS21805at 4837.934 kb on + strand, within QEN71_RS21805at 4837.934 kb on + strand, within QEN71_RS21805at 4837.934 kb on + strand, within QEN71_RS21805at 4837.935 kb on - strand, within QEN71_RS21805at 4837.935 kb on - strand, within QEN71_RS21805at 4837.935 kb on - strand, within QEN71_RS21805at 4837.935 kb on - strand, within QEN71_RS21805at 4837.935 kb on - strand, within QEN71_RS21805at 4837.935 kb on - strand, within QEN71_RS21805at 4837.935 kb on - strand, within QEN71_RS21805at 4837.935 kb on - strand, within QEN71_RS21805at 4837.935 kb on - strand, within QEN71_RS21805at 4837.946 kb on + strand, within QEN71_RS21805at 4837.946 kb on + strand, within QEN71_RS21805at 4837.946 kb on + strand, within QEN71_RS21805at 4837.947 kb on - strand, within QEN71_RS21805at 4837.997 kb on - strand, within QEN71_RS21805at 4838.079 kb on + strandat 4838.079 kb on + strandat 4838.079 kb on + strandat 4838.079 kb on + strandat 4838.079 kb on + strandat 4838.079 kb on + strandat 4838.080 kb on - strandat 4838.080 kb on - strandat 4838.080 kb on - strandat 4838.171 kb on + strandat 4838.171 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumaric (C)
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4,836,515 + -0.2
4,836,617 + QEN71_RS21800 0.14 +0.1
4,836,617 + QEN71_RS21800 0.14 -1.1
4,836,617 + QEN71_RS21800 0.14 +0.9
4,836,617 + QEN71_RS21800 0.14 -0.2
4,836,617 + QEN71_RS21800 0.14 +0.5
4,836,617 + QEN71_RS21800 0.14 -1.4
4,836,617 + QEN71_RS21800 0.14 -1.2
4,836,617 + QEN71_RS21800 0.14 +1.4
4,836,618 - QEN71_RS21800 0.14 +1.5
4,836,618 - QEN71_RS21800 0.14 +1.5
4,836,618 - QEN71_RS21800 0.14 +0.4
4,836,618 - QEN71_RS21800 0.14 -0.0
4,836,618 - QEN71_RS21800 0.14 -0.2
4,836,618 - QEN71_RS21800 0.14 +0.6
4,836,768 + QEN71_RS21800 0.34 +1.8
4,836,768 + QEN71_RS21800 0.34 -0.0
4,836,768 + QEN71_RS21800 0.34 +1.2
4,836,769 - QEN71_RS21800 0.34 -1.9
4,836,770 + QEN71_RS21800 0.34 -0.5
4,836,770 + QEN71_RS21800 0.34 +0.1
4,836,770 + QEN71_RS21800 0.34 +0.6
4,836,770 + QEN71_RS21800 0.34 +0.8
4,836,770 + QEN71_RS21800 0.34 -0.4
4,836,770 + QEN71_RS21800 0.34 +0.4
4,836,770 + QEN71_RS21800 0.34 +2.0
4,836,770 + QEN71_RS21800 0.34 +0.3
4,836,770 + QEN71_RS21800 0.34 +1.4
4,836,770 + QEN71_RS21800 0.34 +1.2
4,836,770 + QEN71_RS21800 0.34 +1.3
4,836,770 + QEN71_RS21800 0.34 +0.2
4,836,771 - QEN71_RS21800 0.34 +0.8
4,836,771 - QEN71_RS21800 0.34 +1.2
4,836,771 - QEN71_RS21800 0.34 +0.8
4,836,771 - QEN71_RS21800 0.34 +0.3
4,836,771 - QEN71_RS21800 0.34 -0.6
4,836,771 - QEN71_RS21800 0.34 +0.9
4,836,771 - QEN71_RS21800 0.34 +0.7
4,836,771 - QEN71_RS21800 0.34 +2.7
4,836,771 - QEN71_RS21800 0.34 +0.6
4,836,827 + QEN71_RS21800 0.42 +1.4
4,836,827 + QEN71_RS21800 0.42 +2.1
4,836,827 + QEN71_RS21800 0.42 +2.4
4,836,828 - QEN71_RS21800 0.42 +1.5
4,836,828 - QEN71_RS21800 0.42 +1.2
4,836,828 - QEN71_RS21800 0.42 +0.7
4,837,261 - +0.5
4,837,295 - -0.4
4,837,424 + QEN71_RS21805 0.14 +0.7
4,837,424 + QEN71_RS21805 0.14 +0.7
4,837,424 + QEN71_RS21805 0.14 +1.1
4,837,424 + QEN71_RS21805 0.14 +1.3
4,837,425 - QEN71_RS21805 0.14 -0.4
4,837,425 - QEN71_RS21805 0.14 +0.7
4,837,433 + QEN71_RS21805 0.15 +0.6
4,837,433 + QEN71_RS21805 0.15 +0.2
4,837,433 + QEN71_RS21805 0.15 -0.7
4,837,433 + QEN71_RS21805 0.15 +0.1
4,837,434 - QEN71_RS21805 0.15 +0.6
4,837,434 - QEN71_RS21805 0.15 -1.2
4,837,434 - QEN71_RS21805 0.15 -0.1
4,837,434 - QEN71_RS21805 0.15 +0.2
4,837,434 - QEN71_RS21805 0.15 +1.0
4,837,434 - QEN71_RS21805 0.15 +0.1
4,837,434 - QEN71_RS21805 0.15 -0.0
4,837,434 - QEN71_RS21805 0.15 +0.0
4,837,434 - QEN71_RS21805 0.15 +0.7
4,837,434 - QEN71_RS21805 0.15 +0.0
4,837,434 - QEN71_RS21805 0.15 +0.3
4,837,434 - QEN71_RS21805 0.15 -0.1
4,837,479 - QEN71_RS21805 0.21 -0.7
4,837,479 - QEN71_RS21805 0.21 +0.1
4,837,583 + QEN71_RS21805 0.34 +0.2
4,837,583 + QEN71_RS21805 0.34 +0.3
4,837,583 + QEN71_RS21805 0.34 -1.0
4,837,584 - QEN71_RS21805 0.34 -0.7
4,837,584 - QEN71_RS21805 0.34 -0.5
4,837,584 - QEN71_RS21805 0.34 -0.8
4,837,584 - QEN71_RS21805 0.34 -3.1
4,837,710 + QEN71_RS21805 0.50 +0.4
4,837,710 + QEN71_RS21805 0.50 +0.2
4,837,711 - QEN71_RS21805 0.50 +0.2
4,837,711 - QEN71_RS21805 0.50 -0.0
4,837,711 - QEN71_RS21805 0.50 -0.0
4,837,711 - QEN71_RS21805 0.50 -1.2
4,837,752 + QEN71_RS21805 0.56 -0.5
4,837,753 - QEN71_RS21805 0.56 +1.1
4,837,786 - QEN71_RS21805 0.60 +0.1
4,837,814 + QEN71_RS21805 0.63 -0.1
4,837,814 + QEN71_RS21805 0.63 +2.3
4,837,814 + QEN71_RS21805 0.63 +0.4
4,837,817 + QEN71_RS21805 0.64 +1.0
4,837,817 + QEN71_RS21805 0.64 -1.5
4,837,817 + QEN71_RS21805 0.64 +0.6
4,837,817 + QEN71_RS21805 0.64 +0.2
4,837,817 + QEN71_RS21805 0.64 +0.2
4,837,818 - QEN71_RS21805 0.64 -0.2
4,837,818 - QEN71_RS21805 0.64 -1.2
4,837,818 - QEN71_RS21805 0.64 -1.2
4,837,818 - QEN71_RS21805 0.64 -0.5
4,837,818 - QEN71_RS21805 0.64 -0.3
4,837,818 - QEN71_RS21805 0.64 -0.5
4,837,934 + QEN71_RS21805 0.79 +1.7
4,837,934 + QEN71_RS21805 0.79 +0.2
4,837,934 + QEN71_RS21805 0.79 -1.8
4,837,934 + QEN71_RS21805 0.79 -1.5
4,837,934 + QEN71_RS21805 0.79 +0.4
4,837,934 + QEN71_RS21805 0.79 +1.1
4,837,934 + QEN71_RS21805 0.79 -0.3
4,837,934 + QEN71_RS21805 0.79 +0.3
4,837,934 + QEN71_RS21805 0.79 +0.5
4,837,934 + QEN71_RS21805 0.79 -0.1
4,837,934 + QEN71_RS21805 0.79 +1.8
4,837,934 + QEN71_RS21805 0.79 -0.7
4,837,934 + QEN71_RS21805 0.79 -0.5
4,837,935 - QEN71_RS21805 0.79 -0.0
4,837,935 - QEN71_RS21805 0.79 +0.5
4,837,935 - QEN71_RS21805 0.79 +0.6
4,837,935 - QEN71_RS21805 0.79 +1.8
4,837,935 - QEN71_RS21805 0.79 +0.4
4,837,935 - QEN71_RS21805 0.79 -0.8
4,837,935 - QEN71_RS21805 0.79 +1.0
4,837,935 - QEN71_RS21805 0.79 -0.0
4,837,935 - QEN71_RS21805 0.79 -0.4
4,837,946 + QEN71_RS21805 0.80 -1.9
4,837,946 + QEN71_RS21805 0.80 -0.5
4,837,946 + QEN71_RS21805 0.80 +0.0
4,837,947 - QEN71_RS21805 0.80 +0.8
4,837,997 - QEN71_RS21805 0.86 -0.4
4,838,079 + +0.0
4,838,079 + -1.6
4,838,079 + +0.5
4,838,079 + +0.8
4,838,079 + +0.3
4,838,079 + +0.6
4,838,080 - +0.3
4,838,080 - -2.1
4,838,080 - +0.0
4,838,171 + +0.1
4,838,171 + -1.6

Or see this region's nucleotide sequence