Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS21750

Experiment: Fumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS21740 and QEN71_RS21745 are separated by 203 nucleotidesQEN71_RS21745 and QEN71_RS21750 are separated by 188 nucleotides QEN71_RS21740: QEN71_RS21740 - undecaprenyl-phosphate glucose phosphotransferase, at 4,823,384 to 4,824,781 _RS21740 QEN71_RS21745: QEN71_RS21745 - hypothetical protein, at 4,824,985 to 4,825,206 _RS21745 QEN71_RS21750: QEN71_RS21750 - mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase, at 4,825,395 to 4,826,942 _RS21750 Position (kb) 4825 4826 4827Strain fitness (log2 ratio) -2 -1 0 1 2at 4824.475 kb on - strand, within QEN71_RS21740at 4824.475 kb on - strand, within QEN71_RS21740at 4824.585 kb on + strand, within QEN71_RS21740at 4824.586 kb on - strand, within QEN71_RS21740at 4824.586 kb on - strand, within QEN71_RS21740at 4824.612 kb on + strand, within QEN71_RS21740at 4824.612 kb on + strand, within QEN71_RS21740at 4824.613 kb on - strand, within QEN71_RS21740at 4824.613 kb on - strand, within QEN71_RS21740at 4824.613 kb on - strand, within QEN71_RS21740at 4824.768 kb on - strandat 4824.950 kb on - strandat 4825.114 kb on + strand, within QEN71_RS21745at 4825.114 kb on + strand, within QEN71_RS21745at 4825.115 kb on - strand, within QEN71_RS21745at 4825.115 kb on - strand, within QEN71_RS21745at 4825.115 kb on - strand, within QEN71_RS21745at 4825.115 kb on - strand, within QEN71_RS21745at 4825.146 kb on + strand, within QEN71_RS21745at 4825.146 kb on + strand, within QEN71_RS21745at 4825.147 kb on - strand, within QEN71_RS21745at 4825.147 kb on - strand, within QEN71_RS21745at 4825.147 kb on - strand, within QEN71_RS21745at 4825.147 kb on - strand, within QEN71_RS21745at 4825.147 kb on - strand, within QEN71_RS21745at 4825.345 kb on - strandat 4825.388 kb on + strandat 4825.388 kb on + strandat 4825.389 kb on - strandat 4825.883 kb on + strand, within QEN71_RS21750at 4825.883 kb on + strand, within QEN71_RS21750at 4825.927 kb on - strand, within QEN71_RS21750at 4825.932 kb on + strand, within QEN71_RS21750at 4825.974 kb on - strand, within QEN71_RS21750at 4826.064 kb on + strand, within QEN71_RS21750at 4826.064 kb on + strand, within QEN71_RS21750at 4826.064 kb on + strand, within QEN71_RS21750at 4826.065 kb on - strand, within QEN71_RS21750at 4826.065 kb on - strand, within QEN71_RS21750at 4826.083 kb on - strand, within QEN71_RS21750at 4826.632 kb on - strand, within QEN71_RS21750at 4826.808 kb on + strandat 4826.808 kb on + strandat 4826.808 kb on + strandat 4826.808 kb on + strandat 4826.809 kb on - strandat 4826.809 kb on - strandat 4826.809 kb on - strandat 4826.809 kb on - strandat 4826.809 kb on - strandat 4826.811 kb on - strandat 4826.890 kb on - strandat 4826.928 kb on + strandat 4826.928 kb on + strandat 4826.940 kb on + strandat 4826.940 kb on + strandat 4826.940 kb on + strandat 4826.940 kb on + strandat 4826.940 kb on + strandat 4826.941 kb on - strandat 4826.941 kb on - strandat 4826.941 kb on - strandat 4826.941 kb on - strandat 4826.941 kb on - strandat 4827.392 kb on + strandat 4827.565 kb on + strandat 4827.565 kb on + strandat 4827.565 kb on + strandat 4827.565 kb on + strandat 4827.565 kb on + strandat 4827.565 kb on + strandat 4827.565 kb on + strandat 4827.565 kb on + strandat 4827.565 kb on + strandat 4827.565 kb on + strandat 4827.565 kb on + strandat 4827.565 kb on + strandat 4827.566 kb on - strandat 4827.566 kb on - strandat 4827.566 kb on - strandat 4827.566 kb on - strandat 4827.566 kb on - strandat 4827.566 kb on - strandat 4827.566 kb on - strandat 4827.574 kb on + strandat 4827.575 kb on - strandat 4827.780 kb on + strandat 4827.780 kb on + strandat 4827.780 kb on + strandat 4827.781 kb on - strandat 4827.781 kb on - strandat 4827.781 kb on - strandat 4827.781 kb on - strandat 4827.781 kb on - strandat 4827.781 kb on - strandat 4827.781 kb on - strandat 4827.781 kb on - strandat 4827.781 kb on - strandat 4827.781 kb on - strandat 4827.781 kb on - strandat 4827.781 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumaric (C)
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4,824,475 - QEN71_RS21740 0.78 +0.9
4,824,475 - QEN71_RS21740 0.78 +0.2
4,824,585 + QEN71_RS21740 0.86 -0.0
4,824,586 - QEN71_RS21740 0.86 +0.4
4,824,586 - QEN71_RS21740 0.86 -0.7
4,824,612 + QEN71_RS21740 0.88 +1.1
4,824,612 + QEN71_RS21740 0.88 -1.1
4,824,613 - QEN71_RS21740 0.88 +0.5
4,824,613 - QEN71_RS21740 0.88 +0.2
4,824,613 - QEN71_RS21740 0.88 -0.2
4,824,768 - +0.3
4,824,950 - +1.8
4,825,114 + QEN71_RS21745 0.58 -0.1
4,825,114 + QEN71_RS21745 0.58 -1.2
4,825,115 - QEN71_RS21745 0.59 -0.8
4,825,115 - QEN71_RS21745 0.59 -2.5
4,825,115 - QEN71_RS21745 0.59 -0.4
4,825,115 - QEN71_RS21745 0.59 +0.3
4,825,146 + QEN71_RS21745 0.73 +0.5
4,825,146 + QEN71_RS21745 0.73 -0.5
4,825,147 - QEN71_RS21745 0.73 +0.2
4,825,147 - QEN71_RS21745 0.73 +0.6
4,825,147 - QEN71_RS21745 0.73 +0.1
4,825,147 - QEN71_RS21745 0.73 -0.1
4,825,147 - QEN71_RS21745 0.73 -0.2
4,825,345 - -0.1
4,825,388 + +0.1
4,825,388 + +1.2
4,825,389 - +2.1
4,825,883 + QEN71_RS21750 0.32 +0.8
4,825,883 + QEN71_RS21750 0.32 -1.3
4,825,927 - QEN71_RS21750 0.34 +0.1
4,825,932 + QEN71_RS21750 0.35 -0.2
4,825,974 - QEN71_RS21750 0.37 +0.1
4,826,064 + QEN71_RS21750 0.43 +0.2
4,826,064 + QEN71_RS21750 0.43 +0.4
4,826,064 + QEN71_RS21750 0.43 +1.1
4,826,065 - QEN71_RS21750 0.43 +0.6
4,826,065 - QEN71_RS21750 0.43 -0.4
4,826,083 - QEN71_RS21750 0.44 +1.2
4,826,632 - QEN71_RS21750 0.80 -0.4
4,826,808 + +0.5
4,826,808 + +0.9
4,826,808 + +0.7
4,826,808 + +0.6
4,826,809 - +0.3
4,826,809 - -0.8
4,826,809 - -1.8
4,826,809 - -0.6
4,826,809 - -0.1
4,826,811 - +1.6
4,826,890 - +0.1
4,826,928 + +0.1
4,826,928 + +1.4
4,826,940 + -0.2
4,826,940 + -0.7
4,826,940 + +0.3
4,826,940 + +0.1
4,826,940 + +0.3
4,826,941 - +0.6
4,826,941 - -0.3
4,826,941 - -0.6
4,826,941 - -0.1
4,826,941 - -0.5
4,827,392 + +0.6
4,827,565 + +0.7
4,827,565 + -0.4
4,827,565 + +1.2
4,827,565 + -0.2
4,827,565 + -0.2
4,827,565 + +0.2
4,827,565 + -1.0
4,827,565 + -0.3
4,827,565 + +0.3
4,827,565 + -0.6
4,827,565 + -0.4
4,827,565 + +0.2
4,827,566 - +0.9
4,827,566 - -1.6
4,827,566 - -0.3
4,827,566 - -1.0
4,827,566 - -1.0
4,827,566 - -0.1
4,827,566 - +1.4
4,827,574 + -0.5
4,827,575 - +0.4
4,827,780 + +0.5
4,827,780 + +0.3
4,827,780 + -0.1
4,827,781 - +0.1
4,827,781 - -1.1
4,827,781 - +0.2
4,827,781 - -0.9
4,827,781 - -0.3
4,827,781 - -1.2
4,827,781 - -0.5
4,827,781 - -0.4
4,827,781 - -0.8
4,827,781 - -1.2
4,827,781 - +0.6
4,827,781 - +1.6

Or see this region's nucleotide sequence