Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS07130

Experiment: Fumaric (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS07125 and QEN71_RS07130 overlap by 4 nucleotidesQEN71_RS07130 and QEN71_RS07135 overlap by 1 nucleotidesQEN71_RS07135 and QEN71_RS07140 are separated by 88 nucleotides QEN71_RS07125: QEN71_RS07125 - polyamine ABC transporter ATP-binding protein, at 1,583,681 to 1,584,844 _RS07125 QEN71_RS07130: QEN71_RS07130 - ABC transporter permease subunit, at 1,584,841 to 1,585,770 _RS07130 QEN71_RS07135: QEN71_RS07135 - ABC transporter permease subunit, at 1,585,770 to 1,586,588 _RS07135 QEN71_RS07140: QEN71_RS07140 - methyl-accepting chemotaxis protein, at 1,586,677 to 1,588,089 _RS07140 Position (kb) 1584 1585 1586Strain fitness (log2 ratio) -3 -2 -1 0 1at 1583.895 kb on + strand, within QEN71_RS07125at 1583.895 kb on + strand, within QEN71_RS07125at 1583.895 kb on + strand, within QEN71_RS07125at 1583.895 kb on + strand, within QEN71_RS07125at 1583.895 kb on + strand, within QEN71_RS07125at 1583.896 kb on - strand, within QEN71_RS07125at 1583.896 kb on - strand, within QEN71_RS07125at 1583.896 kb on - strand, within QEN71_RS07125at 1583.896 kb on - strand, within QEN71_RS07125at 1583.896 kb on - strand, within QEN71_RS07125at 1583.896 kb on - strand, within QEN71_RS07125at 1583.896 kb on - strand, within QEN71_RS07125at 1583.896 kb on - strand, within QEN71_RS07125at 1584.008 kb on + strand, within QEN71_RS07125at 1584.008 kb on + strand, within QEN71_RS07125at 1584.008 kb on + strand, within QEN71_RS07125at 1584.009 kb on - strand, within QEN71_RS07125at 1584.009 kb on - strand, within QEN71_RS07125at 1584.009 kb on - strand, within QEN71_RS07125at 1584.271 kb on + strand, within QEN71_RS07125at 1584.271 kb on + strand, within QEN71_RS07125at 1584.272 kb on - strand, within QEN71_RS07125at 1584.293 kb on - strand, within QEN71_RS07125at 1584.422 kb on + strand, within QEN71_RS07125at 1584.423 kb on - strand, within QEN71_RS07125at 1584.423 kb on - strand, within QEN71_RS07125at 1584.423 kb on - strand, within QEN71_RS07125at 1584.423 kb on - strand, within QEN71_RS07125at 1584.423 kb on - strand, within QEN71_RS07125at 1584.423 kb on - strand, within QEN71_RS07125at 1584.515 kb on + strand, within QEN71_RS07125at 1584.515 kb on + strand, within QEN71_RS07125at 1584.515 kb on + strand, within QEN71_RS07125at 1584.515 kb on + strand, within QEN71_RS07125at 1584.515 kb on + strand, within QEN71_RS07125at 1584.516 kb on - strand, within QEN71_RS07125at 1584.516 kb on - strand, within QEN71_RS07125at 1584.516 kb on - strand, within QEN71_RS07125at 1584.516 kb on - strand, within QEN71_RS07125at 1584.516 kb on - strand, within QEN71_RS07125at 1584.548 kb on + strand, within QEN71_RS07125at 1584.548 kb on + strand, within QEN71_RS07125at 1584.548 kb on + strand, within QEN71_RS07125at 1584.548 kb on + strand, within QEN71_RS07125at 1584.548 kb on + strand, within QEN71_RS07125at 1584.549 kb on - strand, within QEN71_RS07125at 1584.549 kb on - strand, within QEN71_RS07125at 1584.549 kb on - strand, within QEN71_RS07125at 1584.549 kb on - strand, within QEN71_RS07125at 1584.549 kb on - strand, within QEN71_RS07125at 1584.614 kb on - strand, within QEN71_RS07125at 1584.683 kb on + strand, within QEN71_RS07125at 1584.683 kb on + strand, within QEN71_RS07125at 1584.683 kb on + strand, within QEN71_RS07125at 1584.683 kb on + strand, within QEN71_RS07125at 1584.683 kb on + strand, within QEN71_RS07125at 1584.684 kb on - strand, within QEN71_RS07125at 1584.684 kb on - strand, within QEN71_RS07125at 1584.684 kb on - strand, within QEN71_RS07125at 1584.684 kb on - strand, within QEN71_RS07125at 1584.684 kb on - strand, within QEN71_RS07125at 1584.696 kb on - strand, within QEN71_RS07125at 1584.702 kb on + strand, within QEN71_RS07125at 1584.702 kb on + strand, within QEN71_RS07125at 1584.702 kb on + strand, within QEN71_RS07125at 1584.703 kb on - strand, within QEN71_RS07125at 1584.703 kb on - strand, within QEN71_RS07125at 1584.704 kb on + strand, within QEN71_RS07125at 1584.704 kb on + strand, within QEN71_RS07125at 1584.705 kb on - strand, within QEN71_RS07125at 1584.705 kb on - strand, within QEN71_RS07125at 1584.705 kb on - strand, within QEN71_RS07125at 1584.747 kb on + strandat 1584.748 kb on - strandat 1584.748 kb on - strandat 1584.800 kb on + strandat 1584.801 kb on - strandat 1584.801 kb on - strandat 1584.801 kb on - strandat 1585.099 kb on + strand, within QEN71_RS07130at 1585.099 kb on + strand, within QEN71_RS07130at 1585.111 kb on + strand, within QEN71_RS07130at 1585.111 kb on + strand, within QEN71_RS07130at 1585.112 kb on - strand, within QEN71_RS07130at 1585.112 kb on - strand, within QEN71_RS07130at 1585.112 kb on - strand, within QEN71_RS07130at 1585.112 kb on - strand, within QEN71_RS07130at 1585.112 kb on - strand, within QEN71_RS07130at 1585.112 kb on - strand, within QEN71_RS07130at 1585.112 kb on - strand, within QEN71_RS07130at 1585.112 kb on - strand, within QEN71_RS07130at 1585.180 kb on + strand, within QEN71_RS07130at 1585.181 kb on - strand, within QEN71_RS07130at 1585.181 kb on - strand, within QEN71_RS07130at 1585.181 kb on - strand, within QEN71_RS07130at 1585.183 kb on + strand, within QEN71_RS07130at 1585.183 kb on + strand, within QEN71_RS07130at 1585.184 kb on - strand, within QEN71_RS07130at 1585.184 kb on - strand, within QEN71_RS07130at 1585.184 kb on - strand, within QEN71_RS07130at 1585.184 kb on - strand, within QEN71_RS07130at 1585.207 kb on - strand, within QEN71_RS07130at 1585.270 kb on + strand, within QEN71_RS07130at 1585.270 kb on + strand, within QEN71_RS07130at 1585.271 kb on - strand, within QEN71_RS07130at 1585.271 kb on - strand, within QEN71_RS07130at 1585.357 kb on + strand, within QEN71_RS07130at 1585.357 kb on + strand, within QEN71_RS07130at 1585.357 kb on + strand, within QEN71_RS07130at 1585.357 kb on + strand, within QEN71_RS07130at 1585.358 kb on - strand, within QEN71_RS07130at 1585.358 kb on - strand, within QEN71_RS07130at 1585.379 kb on - strand, within QEN71_RS07130at 1585.393 kb on + strand, within QEN71_RS07130at 1585.393 kb on + strand, within QEN71_RS07130at 1585.393 kb on + strand, within QEN71_RS07130at 1585.394 kb on - strand, within QEN71_RS07130at 1585.394 kb on - strand, within QEN71_RS07130at 1585.394 kb on - strand, within QEN71_RS07130at 1585.394 kb on - strand, within QEN71_RS07130at 1585.394 kb on - strand, within QEN71_RS07130at 1585.394 kb on - strand, within QEN71_RS07130at 1585.394 kb on - strand, within QEN71_RS07130at 1585.394 kb on - strand, within QEN71_RS07130at 1585.400 kb on - strand, within QEN71_RS07130at 1585.426 kb on + strand, within QEN71_RS07130at 1585.471 kb on + strand, within QEN71_RS07130at 1585.472 kb on - strand, within QEN71_RS07130at 1585.472 kb on - strand, within QEN71_RS07130at 1585.472 kb on - strand, within QEN71_RS07130at 1585.472 kb on - strand, within QEN71_RS07130at 1585.582 kb on + strand, within QEN71_RS07130at 1585.582 kb on + strand, within QEN71_RS07130at 1585.583 kb on - strand, within QEN71_RS07130at 1585.583 kb on - strand, within QEN71_RS07130at 1585.583 kb on - strand, within QEN71_RS07130at 1585.735 kb on + strandat 1585.786 kb on + strandat 1585.787 kb on - strandat 1585.787 kb on - strandat 1585.827 kb on + strandat 1585.828 kb on - strandat 1585.854 kb on + strand, within QEN71_RS07135at 1585.854 kb on + strand, within QEN71_RS07135at 1585.855 kb on - strand, within QEN71_RS07135at 1585.911 kb on + strand, within QEN71_RS07135at 1586.061 kb on + strand, within QEN71_RS07135at 1586.061 kb on + strand, within QEN71_RS07135at 1586.061 kb on + strand, within QEN71_RS07135at 1586.061 kb on + strand, within QEN71_RS07135at 1586.211 kb on - strand, within QEN71_RS07135at 1586.217 kb on + strand, within QEN71_RS07135at 1586.217 kb on + strand, within QEN71_RS07135at 1586.218 kb on - strand, within QEN71_RS07135at 1586.228 kb on + strand, within QEN71_RS07135at 1586.759 kb on + strandat 1586.760 kb on - strandat 1586.760 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fumaric (C)
remove
1,583,895 + QEN71_RS07125 0.18 -0.0
1,583,895 + QEN71_RS07125 0.18 -0.1
1,583,895 + QEN71_RS07125 0.18 -2.0
1,583,895 + QEN71_RS07125 0.18 -0.4
1,583,895 + QEN71_RS07125 0.18 -0.0
1,583,896 - QEN71_RS07125 0.18 +0.4
1,583,896 - QEN71_RS07125 0.18 -0.7
1,583,896 - QEN71_RS07125 0.18 -0.2
1,583,896 - QEN71_RS07125 0.18 -0.2
1,583,896 - QEN71_RS07125 0.18 -0.4
1,583,896 - QEN71_RS07125 0.18 -0.2
1,583,896 - QEN71_RS07125 0.18 -0.5
1,583,896 - QEN71_RS07125 0.18 -1.1
1,584,008 + QEN71_RS07125 0.28 -0.8
1,584,008 + QEN71_RS07125 0.28 +1.3
1,584,008 + QEN71_RS07125 0.28 +1.0
1,584,009 - QEN71_RS07125 0.28 +0.0
1,584,009 - QEN71_RS07125 0.28 -0.1
1,584,009 - QEN71_RS07125 0.28 +0.3
1,584,271 + QEN71_RS07125 0.51 +0.6
1,584,271 + QEN71_RS07125 0.51 -0.6
1,584,272 - QEN71_RS07125 0.51 -0.6
1,584,293 - QEN71_RS07125 0.53 +0.9
1,584,422 + QEN71_RS07125 0.64 -0.8
1,584,423 - QEN71_RS07125 0.64 +0.1
1,584,423 - QEN71_RS07125 0.64 +0.4
1,584,423 - QEN71_RS07125 0.64 +0.6
1,584,423 - QEN71_RS07125 0.64 +0.7
1,584,423 - QEN71_RS07125 0.64 +0.7
1,584,423 - QEN71_RS07125 0.64 -0.7
1,584,515 + QEN71_RS07125 0.72 -2.9
1,584,515 + QEN71_RS07125 0.72 -1.4
1,584,515 + QEN71_RS07125 0.72 +0.9
1,584,515 + QEN71_RS07125 0.72 -0.4
1,584,515 + QEN71_RS07125 0.72 +0.5
1,584,516 - QEN71_RS07125 0.72 +0.1
1,584,516 - QEN71_RS07125 0.72 -0.4
1,584,516 - QEN71_RS07125 0.72 -1.2
1,584,516 - QEN71_RS07125 0.72 -0.0
1,584,516 - QEN71_RS07125 0.72 +0.6
1,584,548 + QEN71_RS07125 0.74 +0.1
1,584,548 + QEN71_RS07125 0.74 +0.5
1,584,548 + QEN71_RS07125 0.74 +0.6
1,584,548 + QEN71_RS07125 0.74 -0.4
1,584,548 + QEN71_RS07125 0.74 +0.2
1,584,549 - QEN71_RS07125 0.75 +0.2
1,584,549 - QEN71_RS07125 0.75 +1.4
1,584,549 - QEN71_RS07125 0.75 -3.0
1,584,549 - QEN71_RS07125 0.75 -0.0
1,584,549 - QEN71_RS07125 0.75 +0.0
1,584,614 - QEN71_RS07125 0.80 -1.0
1,584,683 + QEN71_RS07125 0.86 +0.1
1,584,683 + QEN71_RS07125 0.86 +0.3
1,584,683 + QEN71_RS07125 0.86 -0.6
1,584,683 + QEN71_RS07125 0.86 -0.3
1,584,683 + QEN71_RS07125 0.86 -0.3
1,584,684 - QEN71_RS07125 0.86 -0.7
1,584,684 - QEN71_RS07125 0.86 +1.2
1,584,684 - QEN71_RS07125 0.86 -1.3
1,584,684 - QEN71_RS07125 0.86 -0.9
1,584,684 - QEN71_RS07125 0.86 +0.3
1,584,696 - QEN71_RS07125 0.87 -0.1
1,584,702 + QEN71_RS07125 0.88 -1.5
1,584,702 + QEN71_RS07125 0.88 +0.1
1,584,702 + QEN71_RS07125 0.88 -0.9
1,584,703 - QEN71_RS07125 0.88 +1.3
1,584,703 - QEN71_RS07125 0.88 -1.0
1,584,704 + QEN71_RS07125 0.88 -2.1
1,584,704 + QEN71_RS07125 0.88 +0.3
1,584,705 - QEN71_RS07125 0.88 +0.1
1,584,705 - QEN71_RS07125 0.88 +0.6
1,584,705 - QEN71_RS07125 0.88 +0.9
1,584,747 + -0.7
1,584,748 - +0.4
1,584,748 - -0.2
1,584,800 + -0.5
1,584,801 - -0.7
1,584,801 - +0.1
1,584,801 - +0.0
1,585,099 + QEN71_RS07130 0.28 -0.5
1,585,099 + QEN71_RS07130 0.28 +0.9
1,585,111 + QEN71_RS07130 0.29 +0.3
1,585,111 + QEN71_RS07130 0.29 +0.1
1,585,112 - QEN71_RS07130 0.29 +0.5
1,585,112 - QEN71_RS07130 0.29 -0.0
1,585,112 - QEN71_RS07130 0.29 -1.7
1,585,112 - QEN71_RS07130 0.29 -0.6
1,585,112 - QEN71_RS07130 0.29 -0.7
1,585,112 - QEN71_RS07130 0.29 -1.5
1,585,112 - QEN71_RS07130 0.29 +0.1
1,585,112 - QEN71_RS07130 0.29 -0.3
1,585,180 + QEN71_RS07130 0.36 +0.1
1,585,181 - QEN71_RS07130 0.37 +0.6
1,585,181 - QEN71_RS07130 0.37 +0.1
1,585,181 - QEN71_RS07130 0.37 -0.9
1,585,183 + QEN71_RS07130 0.37 -0.4
1,585,183 + QEN71_RS07130 0.37 +0.2
1,585,184 - QEN71_RS07130 0.37 -0.6
1,585,184 - QEN71_RS07130 0.37 +1.3
1,585,184 - QEN71_RS07130 0.37 -1.0
1,585,184 - QEN71_RS07130 0.37 +1.6
1,585,207 - QEN71_RS07130 0.39 -0.7
1,585,270 + QEN71_RS07130 0.46 +0.1
1,585,270 + QEN71_RS07130 0.46 -0.2
1,585,271 - QEN71_RS07130 0.46 -0.4
1,585,271 - QEN71_RS07130 0.46 +0.3
1,585,357 + QEN71_RS07130 0.55 +0.3
1,585,357 + QEN71_RS07130 0.55 -0.4
1,585,357 + QEN71_RS07130 0.55 -0.4
1,585,357 + QEN71_RS07130 0.55 +0.3
1,585,358 - QEN71_RS07130 0.56 -1.4
1,585,358 - QEN71_RS07130 0.56 -2.5
1,585,379 - QEN71_RS07130 0.58 -0.5
1,585,393 + QEN71_RS07130 0.59 -0.1
1,585,393 + QEN71_RS07130 0.59 -1.7
1,585,393 + QEN71_RS07130 0.59 -0.7
1,585,394 - QEN71_RS07130 0.59 +0.1
1,585,394 - QEN71_RS07130 0.59 -1.5
1,585,394 - QEN71_RS07130 0.59 +1.3
1,585,394 - QEN71_RS07130 0.59 +0.2
1,585,394 - QEN71_RS07130 0.59 -0.1
1,585,394 - QEN71_RS07130 0.59 -1.3
1,585,394 - QEN71_RS07130 0.59 +1.1
1,585,394 - QEN71_RS07130 0.59 -0.3
1,585,400 - QEN71_RS07130 0.60 +0.3
1,585,426 + QEN71_RS07130 0.63 +0.3
1,585,471 + QEN71_RS07130 0.68 -1.2
1,585,472 - QEN71_RS07130 0.68 +0.2
1,585,472 - QEN71_RS07130 0.68 +0.9
1,585,472 - QEN71_RS07130 0.68 -0.2
1,585,472 - QEN71_RS07130 0.68 +0.2
1,585,582 + QEN71_RS07130 0.80 -1.2
1,585,582 + QEN71_RS07130 0.80 +0.1
1,585,583 - QEN71_RS07130 0.80 -0.4
1,585,583 - QEN71_RS07130 0.80 -0.1
1,585,583 - QEN71_RS07130 0.80 +1.5
1,585,735 + +0.8
1,585,786 + -0.3
1,585,787 - -0.4
1,585,787 - -2.6
1,585,827 + +0.9
1,585,828 - +0.7
1,585,854 + QEN71_RS07135 0.10 -0.3
1,585,854 + QEN71_RS07135 0.10 +1.2
1,585,855 - QEN71_RS07135 0.10 -0.1
1,585,911 + QEN71_RS07135 0.17 -0.9
1,586,061 + QEN71_RS07135 0.36 -0.8
1,586,061 + QEN71_RS07135 0.36 +0.9
1,586,061 + QEN71_RS07135 0.36 -0.4
1,586,061 + QEN71_RS07135 0.36 -0.4
1,586,211 - QEN71_RS07135 0.54 -0.7
1,586,217 + QEN71_RS07135 0.55 +0.0
1,586,217 + QEN71_RS07135 0.55 +0.0
1,586,218 - QEN71_RS07135 0.55 -0.7
1,586,228 + QEN71_RS07135 0.56 +0.3
1,586,759 + -0.2
1,586,760 - -0.7
1,586,760 - -1.4

Or see this region's nucleotide sequence