Experiment: Fumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS03535 and QEN71_RS03540 are separated by 272 nucleotides QEN71_RS03540 and QEN71_RS03545 are separated by 772 nucleotides
QEN71_RS03535: QEN71_RS03535 - chloride channel protein, at 788,994 to 790,391
_RS03535
QEN71_RS03540: QEN71_RS03540 - lipopolysaccharide heptosyltransferase I, at 790,664 to 791,671
_RS03540
QEN71_RS03545: QEN71_RS03545 - hypothetical protein, at 792,444 to 792,623
_RS03545
Position (kb) 790
791
792 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 789.733 kb on + strand, within QEN71_RS03535 at 789.733 kb on + strand, within QEN71_RS03535 at 789.733 kb on + strand, within QEN71_RS03535 at 789.733 kb on + strand, within QEN71_RS03535 at 789.733 kb on + strand, within QEN71_RS03535 at 789.734 kb on - strand, within QEN71_RS03535 at 789.734 kb on - strand, within QEN71_RS03535 at 789.734 kb on - strand, within QEN71_RS03535 at 789.734 kb on - strand, within QEN71_RS03535 at 789.734 kb on - strand, within QEN71_RS03535 at 789.734 kb on - strand, within QEN71_RS03535 at 789.739 kb on + strand, within QEN71_RS03535 at 789.739 kb on + strand, within QEN71_RS03535 at 789.739 kb on + strand, within QEN71_RS03535 at 789.739 kb on + strand, within QEN71_RS03535 at 789.739 kb on + strand, within QEN71_RS03535 at 789.739 kb on + strand, within QEN71_RS03535 at 789.739 kb on + strand, within QEN71_RS03535 at 789.739 kb on + strand, within QEN71_RS03535 at 789.739 kb on + strand, within QEN71_RS03535 at 789.739 kb on + strand, within QEN71_RS03535 at 789.740 kb on - strand, within QEN71_RS03535 at 789.740 kb on - strand, within QEN71_RS03535 at 789.740 kb on - strand, within QEN71_RS03535 at 789.740 kb on - strand, within QEN71_RS03535 at 789.740 kb on - strand, within QEN71_RS03535 at 789.740 kb on - strand, within QEN71_RS03535 at 789.740 kb on - strand, within QEN71_RS03535 at 789.740 kb on - strand, within QEN71_RS03535 at 789.740 kb on - strand, within QEN71_RS03535 at 789.740 kb on - strand, within QEN71_RS03535 at 789.740 kb on - strand, within QEN71_RS03535 at 790.061 kb on + strand, within QEN71_RS03535 at 790.061 kb on + strand, within QEN71_RS03535 at 790.062 kb on - strand, within QEN71_RS03535 at 790.252 kb on + strand at 790.252 kb on + strand at 790.253 kb on - strand at 790.253 kb on - strand at 790.258 kb on + strand at 790.277 kb on - strand at 790.277 kb on - strand at 790.327 kb on + strand at 790.465 kb on + strand at 790.465 kb on + strand at 790.465 kb on + strand at 790.465 kb on + strand at 790.465 kb on + strand at 790.465 kb on + strand at 790.465 kb on + strand at 790.465 kb on + strand at 790.465 kb on + strand at 790.465 kb on + strand at 790.465 kb on + strand at 790.465 kb on + strand at 790.466 kb on - strand at 790.466 kb on - strand at 790.466 kb on - strand at 790.466 kb on - strand at 790.466 kb on - strand at 790.466 kb on - strand at 790.467 kb on + strand at 790.467 kb on + strand at 790.467 kb on + strand at 790.467 kb on + strand at 790.467 kb on + strand at 790.468 kb on - strand at 790.468 kb on - strand at 790.468 kb on - strand at 790.468 kb on - strand at 790.544 kb on + strand at 790.544 kb on + strand at 790.544 kb on + strand at 790.544 kb on + strand at 790.545 kb on - strand at 790.545 kb on - strand at 790.545 kb on - strand at 790.545 kb on - strand at 790.545 kb on - strand at 790.545 kb on - strand at 790.545 kb on - strand at 790.560 kb on + strand at 790.560 kb on + strand at 790.561 kb on - strand at 790.710 kb on + strand at 790.710 kb on + strand at 790.711 kb on - strand at 790.711 kb on - strand at 790.711 kb on - strand at 790.711 kb on - strand at 790.723 kb on + strand at 790.922 kb on + strand, within QEN71_RS03540 at 790.923 kb on - strand, within QEN71_RS03540 at 790.952 kb on + strand, within QEN71_RS03540 at 790.952 kb on + strand, within QEN71_RS03540 at 790.953 kb on - strand, within QEN71_RS03540 at 791.147 kb on + strand, within QEN71_RS03540 at 791.148 kb on - strand, within QEN71_RS03540 at 791.148 kb on - strand, within QEN71_RS03540 at 791.214 kb on + strand, within QEN71_RS03540 at 791.214 kb on + strand, within QEN71_RS03540 at 791.214 kb on + strand, within QEN71_RS03540 at 791.214 kb on + strand, within QEN71_RS03540 at 791.214 kb on + strand, within QEN71_RS03540 at 791.214 kb on + strand, within QEN71_RS03540 at 791.214 kb on + strand, within QEN71_RS03540 at 791.215 kb on - strand, within QEN71_RS03540 at 791.215 kb on - strand, within QEN71_RS03540 at 791.215 kb on - strand, within QEN71_RS03540 at 791.215 kb on - strand, within QEN71_RS03540 at 791.215 kb on - strand, within QEN71_RS03540 at 791.215 kb on - strand, within QEN71_RS03540 at 791.215 kb on - strand, within QEN71_RS03540 at 791.364 kb on + strand, within QEN71_RS03540 at 791.364 kb on + strand, within QEN71_RS03540 at 791.364 kb on + strand, within QEN71_RS03540 at 791.364 kb on + strand, within QEN71_RS03540 at 791.364 kb on + strand, within QEN71_RS03540 at 791.364 kb on + strand, within QEN71_RS03540 at 791.365 kb on - strand, within QEN71_RS03540 at 791.365 kb on - strand, within QEN71_RS03540 at 791.365 kb on - strand, within QEN71_RS03540 at 791.365 kb on - strand, within QEN71_RS03540 at 791.365 kb on - strand, within QEN71_RS03540 at 791.533 kb on + strand, within QEN71_RS03540 at 791.533 kb on + strand, within QEN71_RS03540 at 791.533 kb on + strand, within QEN71_RS03540 at 791.534 kb on - strand, within QEN71_RS03540 at 791.534 kb on - strand, within QEN71_RS03540 at 791.534 kb on - strand, within QEN71_RS03540 at 791.534 kb on - strand, within QEN71_RS03540 at 791.573 kb on + strand at 791.573 kb on + strand at 791.573 kb on + strand at 791.573 kb on + strand at 791.573 kb on + strand at 791.573 kb on + strand at 791.573 kb on + strand at 791.573 kb on + strand at 791.573 kb on + strand at 791.574 kb on - strand at 791.574 kb on - strand at 791.574 kb on - strand at 791.574 kb on - strand at 791.574 kb on - strand at 791.574 kb on - strand at 791.574 kb on - strand at 791.574 kb on - strand at 791.574 kb on - strand at 791.574 kb on - strand at 791.574 kb on - strand at 791.574 kb on - strand at 791.574 kb on - strand at 791.574 kb on - strand at 791.574 kb on - strand at 791.574 kb on - strand at 791.682 kb on + strand at 791.682 kb on + strand at 791.682 kb on + strand at 791.682 kb on + strand at 791.682 kb on + strand at 791.682 kb on + strand at 791.690 kb on - strand at 791.690 kb on - strand at 791.809 kb on + strand at 791.810 kb on - strand at 791.810 kb on - strand at 791.820 kb on + strand at 791.820 kb on + strand at 791.821 kb on - strand at 791.829 kb on + strand at 791.829 kb on + strand at 791.830 kb on - strand at 791.942 kb on + strand at 791.942 kb on + strand at 791.943 kb on - strand at 791.943 kb on - strand at 791.943 kb on - strand at 791.943 kb on - strand at 791.943 kb on - strand at 791.943 kb on - strand at 791.970 kb on + strand at 791.970 kb on + strand at 791.970 kb on + strand at 791.971 kb on - strand at 791.971 kb on - strand at 791.971 kb on - strand at 791.971 kb on - strand at 791.971 kb on - strand at 791.981 kb on + strand at 791.982 kb on - strand at 792.108 kb on + strand at 792.108 kb on + strand at 792.109 kb on - strand at 792.184 kb on - strand at 792.184 kb on - strand at 792.205 kb on + strand at 792.206 kb on - strand at 792.288 kb on + strand at 792.288 kb on + strand at 792.288 kb on + strand at 792.289 kb on - strand at 792.289 kb on - strand at 792.364 kb on + strand at 792.364 kb on + strand at 792.364 kb on + strand at 792.364 kb on + strand at 792.364 kb on + strand at 792.365 kb on - strand at 792.365 kb on - strand at 792.365 kb on - strand at 792.365 kb on - strand at 792.390 kb on - strand at 792.404 kb on + strand at 792.404 kb on + strand at 792.404 kb on + strand at 792.405 kb on - strand at 792.407 kb on + strand at 792.407 kb on + strand at 792.407 kb on + strand at 792.407 kb on + strand at 792.407 kb on + strand at 792.407 kb on + strand at 792.407 kb on + strand at 792.407 kb on + strand at 792.407 kb on + strand at 792.407 kb on + strand at 792.407 kb on + strand at 792.407 kb on + strand at 792.407 kb on + strand at 792.407 kb on + strand at 792.408 kb on - strand at 792.408 kb on - strand at 792.408 kb on - strand at 792.408 kb on - strand at 792.408 kb on - strand at 792.408 kb on - strand at 792.408 kb on - strand at 792.408 kb on - strand at 792.408 kb on - strand at 792.408 kb on - strand at 792.408 kb on - strand at 792.408 kb on - strand at 792.410 kb on + strand at 792.410 kb on + strand at 792.410 kb on + strand at 792.410 kb on + strand at 792.410 kb on + strand at 792.411 kb on - strand at 792.411 kb on - strand at 792.664 kb on + strand at 792.664 kb on + strand at 792.664 kb on + strand at 792.664 kb on + strand at 792.664 kb on + strand at 792.664 kb on + strand at 792.665 kb on - strand at 792.665 kb on - strand at 792.665 kb on - strand at 792.665 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumaric (C) remove 789,733 + QEN71_RS03535 0.53 -0.7 789,733 + QEN71_RS03535 0.53 -0.7 789,733 + QEN71_RS03535 0.53 -0.1 789,733 + QEN71_RS03535 0.53 -0.3 789,733 + QEN71_RS03535 0.53 -0.0 789,734 - QEN71_RS03535 0.53 +0.0 789,734 - QEN71_RS03535 0.53 -0.4 789,734 - QEN71_RS03535 0.53 -0.9 789,734 - QEN71_RS03535 0.53 +0.8 789,734 - QEN71_RS03535 0.53 -1.5 789,734 - QEN71_RS03535 0.53 +0.2 789,739 + QEN71_RS03535 0.53 -2.9 789,739 + QEN71_RS03535 0.53 -1.4 789,739 + QEN71_RS03535 0.53 -1.6 789,739 + QEN71_RS03535 0.53 +1.2 789,739 + QEN71_RS03535 0.53 -0.3 789,739 + QEN71_RS03535 0.53 -0.1 789,739 + QEN71_RS03535 0.53 -0.3 789,739 + QEN71_RS03535 0.53 +1.0 789,739 + QEN71_RS03535 0.53 -0.1 789,739 + QEN71_RS03535 0.53 +0.2 789,740 - QEN71_RS03535 0.53 -0.3 789,740 - QEN71_RS03535 0.53 -0.5 789,740 - QEN71_RS03535 0.53 +0.2 789,740 - QEN71_RS03535 0.53 +0.1 789,740 - QEN71_RS03535 0.53 -0.3 789,740 - QEN71_RS03535 0.53 +0.8 789,740 - QEN71_RS03535 0.53 +0.6 789,740 - QEN71_RS03535 0.53 -1.1 789,740 - QEN71_RS03535 0.53 -0.5 789,740 - QEN71_RS03535 0.53 +0.5 789,740 - QEN71_RS03535 0.53 -0.1 790,061 + QEN71_RS03535 0.76 +0.2 790,061 + QEN71_RS03535 0.76 -0.5 790,062 - QEN71_RS03535 0.76 +0.9 790,252 + -1.1 790,252 + -1.1 790,253 - -0.2 790,253 - -0.4 790,258 + +0.9 790,277 - +0.3 790,277 - -1.5 790,327 + +0.6 790,465 + -0.9 790,465 + -0.0 790,465 + +0.1 790,465 + +0.1 790,465 + +0.4 790,465 + -0.2 790,465 + -0.5 790,465 + -1.7 790,465 + -0.2 790,465 + -0.4 790,465 + +0.7 790,465 + -0.8 790,466 - -0.3 790,466 - -0.3 790,466 - +0.2 790,466 - -0.2 790,466 - -0.8 790,466 - +1.9 790,467 + -0.1 790,467 + -0.2 790,467 + -0.0 790,467 + -1.5 790,467 + +2.5 790,468 - -0.5 790,468 - -0.2 790,468 - +0.6 790,468 - +0.6 790,544 + -0.2 790,544 + +0.0 790,544 + -0.6 790,544 + -0.1 790,545 - +0.9 790,545 - -0.2 790,545 - -1.1 790,545 - +0.2 790,545 - +1.9 790,545 - +1.9 790,545 - +0.1 790,560 + +0.6 790,560 + +0.5 790,561 - -0.1 790,710 + -0.4 790,710 + -0.1 790,711 - -0.4 790,711 - +0.0 790,711 - +0.5 790,711 - -0.5 790,723 + +0.5 790,922 + QEN71_RS03540 0.26 +0.8 790,923 - QEN71_RS03540 0.26 -1.1 790,952 + QEN71_RS03540 0.29 +0.6 790,952 + QEN71_RS03540 0.29 -0.0 790,953 - QEN71_RS03540 0.29 +0.1 791,147 + QEN71_RS03540 0.48 -1.4 791,148 - QEN71_RS03540 0.48 +0.5 791,148 - QEN71_RS03540 0.48 -0.3 791,214 + QEN71_RS03540 0.55 -0.0 791,214 + QEN71_RS03540 0.55 -0.1 791,214 + QEN71_RS03540 0.55 -1.9 791,214 + QEN71_RS03540 0.55 +0.1 791,214 + QEN71_RS03540 0.55 -0.7 791,214 + QEN71_RS03540 0.55 -1.3 791,214 + QEN71_RS03540 0.55 +0.4 791,215 - QEN71_RS03540 0.55 +0.4 791,215 - QEN71_RS03540 0.55 -0.1 791,215 - QEN71_RS03540 0.55 +0.6 791,215 - QEN71_RS03540 0.55 -1.1 791,215 - QEN71_RS03540 0.55 -1.4 791,215 - QEN71_RS03540 0.55 -1.4 791,215 - QEN71_RS03540 0.55 -0.3 791,364 + QEN71_RS03540 0.69 +0.9 791,364 + QEN71_RS03540 0.69 -2.6 791,364 + QEN71_RS03540 0.69 -0.3 791,364 + QEN71_RS03540 0.69 -0.8 791,364 + QEN71_RS03540 0.69 -0.4 791,364 + QEN71_RS03540 0.69 +1.0 791,365 - QEN71_RS03540 0.70 -1.2 791,365 - QEN71_RS03540 0.70 -0.9 791,365 - QEN71_RS03540 0.70 -0.6 791,365 - QEN71_RS03540 0.70 +0.3 791,365 - QEN71_RS03540 0.70 -0.1 791,533 + QEN71_RS03540 0.86 -1.5 791,533 + QEN71_RS03540 0.86 +0.0 791,533 + QEN71_RS03540 0.86 -0.3 791,534 - QEN71_RS03540 0.86 -1.1 791,534 - QEN71_RS03540 0.86 -0.1 791,534 - QEN71_RS03540 0.86 -1.7 791,534 - QEN71_RS03540 0.86 -0.4 791,573 + +0.8 791,573 + -1.7 791,573 + -2.5 791,573 + +0.0 791,573 + -1.0 791,573 + +0.3 791,573 + -0.3 791,573 + -0.4 791,573 + -0.6 791,574 - +0.1 791,574 - -0.6 791,574 - -0.1 791,574 - -0.6 791,574 - -0.3 791,574 - +0.7 791,574 - -1.5 791,574 - +1.9 791,574 - +0.1 791,574 - -1.8 791,574 - -1.3 791,574 - -0.6 791,574 - -0.4 791,574 - -1.7 791,574 - -0.7 791,574 - +1.5 791,682 + -1.2 791,682 + -0.2 791,682 + +0.6 791,682 + -0.1 791,682 + -0.5 791,682 + +0.4 791,690 - -0.5 791,690 - +1.0 791,809 + -0.6 791,810 - -0.1 791,810 - +0.1 791,820 + +0.3 791,820 + -1.0 791,821 - +0.1 791,829 + -0.4 791,829 + +0.2 791,830 - -0.3 791,942 + -0.4 791,942 + -0.1 791,943 - +0.8 791,943 - +1.2 791,943 - +0.4 791,943 - -0.1 791,943 - -0.4 791,943 - +0.4 791,970 + +0.1 791,970 + -1.7 791,970 + -0.6 791,971 - -0.1 791,971 - +0.6 791,971 - -2.1 791,971 - +0.5 791,971 - -0.2 791,981 + +1.9 791,982 - +1.6 792,108 + +0.5 792,108 + +1.0 792,109 - -1.0 792,184 - +0.1 792,184 - -0.5 792,205 + -0.6 792,206 - -1.5 792,288 + +0.8 792,288 + -0.5 792,288 + -1.3 792,289 - +1.2 792,289 - +0.6 792,364 + -0.7 792,364 + +0.1 792,364 + -0.3 792,364 + -0.1 792,364 + -1.4 792,365 - +0.2 792,365 - -0.6 792,365 - -0.7 792,365 - -0.4 792,390 - -0.8 792,404 + -1.4 792,404 + +0.3 792,404 + -1.5 792,405 - +0.7 792,407 + -1.9 792,407 + +0.9 792,407 + -3.5 792,407 + -0.4 792,407 + -0.7 792,407 + -0.3 792,407 + -0.4 792,407 + -0.8 792,407 + -0.1 792,407 + -0.2 792,407 + -2.1 792,407 + -0.1 792,407 + -0.9 792,407 + +0.8 792,408 - -0.5 792,408 - -0.7 792,408 - -2.3 792,408 - +0.6 792,408 - -0.5 792,408 - +0.1 792,408 - -0.5 792,408 - +1.0 792,408 - -0.2 792,408 - -0.3 792,408 - +0.5 792,408 - +2.3 792,410 + +0.5 792,410 + +0.1 792,410 + -0.8 792,410 + -0.1 792,410 + +0.4 792,411 - +0.2 792,411 - +0.1 792,664 + +0.5 792,664 + +0.8 792,664 + +0.7 792,664 + +0.7 792,664 + -0.1 792,664 + -0.2 792,665 - +0.8 792,665 - +0.7 792,665 - +1.0 792,665 - +0.5
Or see this region's nucleotide sequence