Experiment: Fumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS02790 and QEN71_RS02795 are separated by 201 nucleotides QEN71_RS02795 and QEN71_RS02800 are separated by 486 nucleotides QEN71_RS02800 and QEN71_RS02805 are separated by 5 nucleotides QEN71_RS02805 and QEN71_RS02810 are separated by 82 nucleotides
QEN71_RS02790: QEN71_RS02790 - DUF3579 domain-containing protein, at 624,771 to 625,106
_RS02790
QEN71_RS02795: QEN71_RS02795 - 30S ribosomal protein S20, at 625,308 to 625,586
_RS02795
QEN71_RS02800: QEN71_RS02800 - murein biosynthesis integral membrane protein MurJ, at 626,073 to 627,623
_RS02800
QEN71_RS02805: QEN71_RS02805 - SirB1 family protein, at 627,629 to 628,471
_RS02805
QEN71_RS02810: QEN71_RS02810 - 3-hydroxyacyl-CoA dehydrogenase, at 628,554 to 629,312
_RS02810
Position (kb) 626
627
628 Strain fitness (log2 ratio) -2
-1
0
1
2 at 625.310 kb on - strand at 626.058 kb on + strand at 626.058 kb on + strand at 626.058 kb on + strand at 626.058 kb on + strand at 626.058 kb on + strand at 626.058 kb on + strand at 626.059 kb on - strand at 626.059 kb on - strand at 626.059 kb on - strand at 626.059 kb on - strand at 626.059 kb on - strand at 626.060 kb on + strand at 626.060 kb on + strand at 626.060 kb on + strand at 626.060 kb on + strand at 626.060 kb on + strand at 626.060 kb on + strand at 626.060 kb on + strand at 626.060 kb on + strand at 626.063 kb on + strand at 626.063 kb on + strand at 626.063 kb on + strand at 626.063 kb on + strand at 626.063 kb on + strand at 626.063 kb on + strand at 626.063 kb on + strand at 626.063 kb on + strand at 627.594 kb on + strand at 627.594 kb on + strand at 627.594 kb on + strand at 627.594 kb on + strand at 627.594 kb on + strand at 627.594 kb on + strand at 627.595 kb on - strand at 627.595 kb on - strand at 627.595 kb on - strand at 627.595 kb on - strand at 627.595 kb on - strand at 627.595 kb on - strand at 627.595 kb on - strand at 627.595 kb on - strand at 627.600 kb on + strand at 627.601 kb on - strand at 627.601 kb on - strand at 627.601 kb on - strand at 627.647 kb on + strand at 627.648 kb on - strand at 627.723 kb on - strand, within QEN71_RS02805 at 627.736 kb on + strand, within QEN71_RS02805 at 627.839 kb on + strand, within QEN71_RS02805 at 627.840 kb on - strand, within QEN71_RS02805 at 627.840 kb on - strand, within QEN71_RS02805 at 627.840 kb on - strand, within QEN71_RS02805 at 627.840 kb on - strand, within QEN71_RS02805 at 627.840 kb on - strand, within QEN71_RS02805 at 627.881 kb on + strand, within QEN71_RS02805 at 627.881 kb on + strand, within QEN71_RS02805 at 627.881 kb on + strand, within QEN71_RS02805 at 627.881 kb on + strand, within QEN71_RS02805 at 627.881 kb on + strand, within QEN71_RS02805 at 627.882 kb on - strand, within QEN71_RS02805 at 627.884 kb on + strand, within QEN71_RS02805 at 627.884 kb on + strand, within QEN71_RS02805 at 627.884 kb on + strand, within QEN71_RS02805 at 627.884 kb on + strand, within QEN71_RS02805 at 627.884 kb on + strand, within QEN71_RS02805 at 627.885 kb on - strand, within QEN71_RS02805 at 627.885 kb on - strand, within QEN71_RS02805 at 627.885 kb on - strand, within QEN71_RS02805 at 627.885 kb on - strand, within QEN71_RS02805 at 627.885 kb on - strand, within QEN71_RS02805 at 627.885 kb on - strand, within QEN71_RS02805 at 627.885 kb on - strand, within QEN71_RS02805 at 627.885 kb on - strand, within QEN71_RS02805 at 627.885 kb on - strand, within QEN71_RS02805 at 627.959 kb on + strand, within QEN71_RS02805 at 627.959 kb on + strand, within QEN71_RS02805 at 627.959 kb on + strand, within QEN71_RS02805 at 627.959 kb on + strand, within QEN71_RS02805 at 627.960 kb on - strand, within QEN71_RS02805 at 627.960 kb on - strand, within QEN71_RS02805 at 627.960 kb on - strand, within QEN71_RS02805 at 627.985 kb on + strand, within QEN71_RS02805 at 627.986 kb on - strand, within QEN71_RS02805 at 627.986 kb on - strand, within QEN71_RS02805 at 628.118 kb on + strand, within QEN71_RS02805 at 628.118 kb on + strand, within QEN71_RS02805 at 628.118 kb on + strand, within QEN71_RS02805 at 628.118 kb on + strand, within QEN71_RS02805 at 628.118 kb on + strand, within QEN71_RS02805 at 628.118 kb on + strand, within QEN71_RS02805 at 628.118 kb on + strand, within QEN71_RS02805 at 628.119 kb on - strand, within QEN71_RS02805 at 628.119 kb on - strand, within QEN71_RS02805 at 628.119 kb on - strand, within QEN71_RS02805 at 628.119 kb on - strand, within QEN71_RS02805 at 628.119 kb on - strand, within QEN71_RS02805 at 628.119 kb on - strand, within QEN71_RS02805 at 628.119 kb on - strand, within QEN71_RS02805 at 628.119 kb on - strand, within QEN71_RS02805 at 628.119 kb on - strand, within QEN71_RS02805 at 628.226 kb on + strand, within QEN71_RS02805 at 628.226 kb on + strand, within QEN71_RS02805 at 628.226 kb on + strand, within QEN71_RS02805 at 628.226 kb on + strand, within QEN71_RS02805 at 628.226 kb on + strand, within QEN71_RS02805 at 628.226 kb on + strand, within QEN71_RS02805 at 628.226 kb on + strand, within QEN71_RS02805 at 628.226 kb on + strand, within QEN71_RS02805 at 628.226 kb on + strand, within QEN71_RS02805 at 628.227 kb on - strand, within QEN71_RS02805 at 628.227 kb on - strand, within QEN71_RS02805 at 628.227 kb on - strand, within QEN71_RS02805 at 628.329 kb on - strand, within QEN71_RS02805 at 628.329 kb on - strand, within QEN71_RS02805 at 628.329 kb on - strand, within QEN71_RS02805 at 628.343 kb on + strand, within QEN71_RS02805 at 628.343 kb on + strand, within QEN71_RS02805 at 628.343 kb on + strand, within QEN71_RS02805 at 628.343 kb on + strand, within QEN71_RS02805 at 628.343 kb on + strand, within QEN71_RS02805 at 628.343 kb on + strand, within QEN71_RS02805 at 628.344 kb on - strand, within QEN71_RS02805 at 628.344 kb on - strand, within QEN71_RS02805 at 628.344 kb on - strand, within QEN71_RS02805 at 628.344 kb on - strand, within QEN71_RS02805 at 628.376 kb on + strand, within QEN71_RS02805 at 628.376 kb on + strand, within QEN71_RS02805 at 628.376 kb on + strand, within QEN71_RS02805 at 628.377 kb on - strand, within QEN71_RS02805 at 628.377 kb on - strand, within QEN71_RS02805 at 628.506 kb on - strand at 628.506 kb on - strand at 628.506 kb on - strand at 628.506 kb on - strand at 628.506 kb on - strand at 628.506 kb on - strand at 628.506 kb on - strand at 628.513 kb on + strand at 628.513 kb on + strand at 628.513 kb on + strand at 628.514 kb on - strand at 628.514 kb on - strand at 628.514 kb on - strand at 628.514 kb on - strand at 628.514 kb on - strand at 628.555 kb on + strand at 628.555 kb on + strand at 628.555 kb on + strand at 628.555 kb on + strand at 628.556 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fumaric (C) remove 625,310 - -0.9 626,058 + -0.0 626,058 + +1.5 626,058 + -0.5 626,058 + -0.7 626,058 + +0.1 626,058 + +0.3 626,059 - +1.1 626,059 - +0.3 626,059 - +1.3 626,059 - -0.9 626,059 - -0.2 626,060 + +0.5 626,060 + -0.0 626,060 + +0.5 626,060 + +0.5 626,060 + +0.9 626,060 + -1.0 626,060 + +0.5 626,060 + +0.3 626,063 + -0.6 626,063 + -0.3 626,063 + -0.5 626,063 + +1.6 626,063 + +1.7 626,063 + -0.7 626,063 + -0.1 626,063 + +0.3 627,594 + -0.3 627,594 + -0.6 627,594 + +0.0 627,594 + -0.4 627,594 + -0.1 627,594 + +1.7 627,595 - -0.4 627,595 - -0.5 627,595 - +0.7 627,595 - -0.7 627,595 - -1.0 627,595 - -1.5 627,595 - +0.4 627,595 - -0.6 627,600 + -1.1 627,601 - -0.7 627,601 - -0.6 627,601 - -0.1 627,647 + -0.7 627,648 - +1.3 627,723 - QEN71_RS02805 0.11 -1.0 627,736 + QEN71_RS02805 0.13 -0.1 627,839 + QEN71_RS02805 0.25 -0.5 627,840 - QEN71_RS02805 0.25 +1.3 627,840 - QEN71_RS02805 0.25 -0.7 627,840 - QEN71_RS02805 0.25 +0.9 627,840 - QEN71_RS02805 0.25 +1.1 627,840 - QEN71_RS02805 0.25 +0.9 627,881 + QEN71_RS02805 0.30 +0.8 627,881 + QEN71_RS02805 0.30 +0.3 627,881 + QEN71_RS02805 0.30 -1.0 627,881 + QEN71_RS02805 0.30 -0.7 627,881 + QEN71_RS02805 0.30 +0.7 627,882 - QEN71_RS02805 0.30 +0.0 627,884 + QEN71_RS02805 0.30 -0.9 627,884 + QEN71_RS02805 0.30 +0.3 627,884 + QEN71_RS02805 0.30 -0.4 627,884 + QEN71_RS02805 0.30 +0.2 627,884 + QEN71_RS02805 0.30 -0.3 627,885 - QEN71_RS02805 0.30 -0.4 627,885 - QEN71_RS02805 0.30 -1.9 627,885 - QEN71_RS02805 0.30 +0.2 627,885 - QEN71_RS02805 0.30 +0.2 627,885 - QEN71_RS02805 0.30 -0.1 627,885 - QEN71_RS02805 0.30 -0.6 627,885 - QEN71_RS02805 0.30 -0.2 627,885 - QEN71_RS02805 0.30 -1.1 627,885 - QEN71_RS02805 0.30 -0.3 627,959 + QEN71_RS02805 0.39 -0.1 627,959 + QEN71_RS02805 0.39 +0.4 627,959 + QEN71_RS02805 0.39 -0.1 627,959 + QEN71_RS02805 0.39 +0.2 627,960 - QEN71_RS02805 0.39 -0.1 627,960 - QEN71_RS02805 0.39 +0.0 627,960 - QEN71_RS02805 0.39 +0.6 627,985 + QEN71_RS02805 0.42 +1.5 627,986 - QEN71_RS02805 0.42 -2.2 627,986 - QEN71_RS02805 0.42 -1.2 628,118 + QEN71_RS02805 0.58 +0.3 628,118 + QEN71_RS02805 0.58 -0.4 628,118 + QEN71_RS02805 0.58 -0.5 628,118 + QEN71_RS02805 0.58 +0.1 628,118 + QEN71_RS02805 0.58 -1.1 628,118 + QEN71_RS02805 0.58 -0.5 628,118 + QEN71_RS02805 0.58 +0.4 628,119 - QEN71_RS02805 0.58 +0.3 628,119 - QEN71_RS02805 0.58 -0.4 628,119 - QEN71_RS02805 0.58 +0.3 628,119 - QEN71_RS02805 0.58 -0.2 628,119 - QEN71_RS02805 0.58 -1.9 628,119 - QEN71_RS02805 0.58 +0.4 628,119 - QEN71_RS02805 0.58 +0.1 628,119 - QEN71_RS02805 0.58 +0.3 628,119 - QEN71_RS02805 0.58 -0.8 628,226 + QEN71_RS02805 0.71 -1.7 628,226 + QEN71_RS02805 0.71 -1.0 628,226 + QEN71_RS02805 0.71 -0.1 628,226 + QEN71_RS02805 0.71 +2.3 628,226 + QEN71_RS02805 0.71 -1.1 628,226 + QEN71_RS02805 0.71 -0.6 628,226 + QEN71_RS02805 0.71 -0.1 628,226 + QEN71_RS02805 0.71 +1.2 628,226 + QEN71_RS02805 0.71 +0.1 628,227 - QEN71_RS02805 0.71 -0.4 628,227 - QEN71_RS02805 0.71 +0.9 628,227 - QEN71_RS02805 0.71 +0.7 628,329 - QEN71_RS02805 0.83 +0.0 628,329 - QEN71_RS02805 0.83 -2.0 628,329 - QEN71_RS02805 0.83 -0.3 628,343 + QEN71_RS02805 0.85 -0.7 628,343 + QEN71_RS02805 0.85 +0.3 628,343 + QEN71_RS02805 0.85 +0.1 628,343 + QEN71_RS02805 0.85 +0.5 628,343 + QEN71_RS02805 0.85 -0.5 628,343 + QEN71_RS02805 0.85 -0.1 628,344 - QEN71_RS02805 0.85 +0.6 628,344 - QEN71_RS02805 0.85 +0.9 628,344 - QEN71_RS02805 0.85 +0.2 628,344 - QEN71_RS02805 0.85 +0.4 628,376 + QEN71_RS02805 0.89 +0.4 628,376 + QEN71_RS02805 0.89 -0.2 628,376 + QEN71_RS02805 0.89 -0.1 628,377 - QEN71_RS02805 0.89 -0.9 628,377 - QEN71_RS02805 0.89 +0.3 628,506 - -0.8 628,506 - -0.9 628,506 - -0.5 628,506 - -1.6 628,506 - -1.5 628,506 - -0.7 628,506 - +1.4 628,513 + -0.2 628,513 + -0.4 628,513 + -1.0 628,514 - -0.5 628,514 - +2.3 628,514 - +0.5 628,514 - +0.6 628,514 - +1.1 628,555 + -1.5 628,555 + +0.8 628,555 + -0.8 628,555 + -0.5 628,556 - +0.0
Or see this region's nucleotide sequence