Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03125

Experiment: biofilm; Day1; NLDM;

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03120 and LRK53_RS03125 are separated by 108 nucleotidesLRK53_RS03125 and LRK53_RS03130 are separated by 10 nucleotidesLRK53_RS03130 and LRK53_RS03135 are separated by 206 nucleotides LRK53_RS03120: LRK53_RS03120 - 2-isopropylmalate synthase, at 728,570 to 730,204 _RS03120 LRK53_RS03125: LRK53_RS03125 - hypothetical protein, at 730,313 to 730,450 _RS03125 LRK53_RS03130: LRK53_RS03130 - TetR/AcrR family transcriptional regulator, at 730,461 to 731,168 _RS03130 LRK53_RS03135: LRK53_RS03135 - heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein, at 731,375 to 732,445 _RS03135 Position (kb) 730 731Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 729.354 kb on + strand, within LRK53_RS03120at 729.354 kb on + strand, within LRK53_RS03120at 729.355 kb on - strand, within LRK53_RS03120at 729.355 kb on - strand, within LRK53_RS03120at 729.597 kb on + strand, within LRK53_RS03120at 729.597 kb on + strand, within LRK53_RS03120at 729.597 kb on + strand, within LRK53_RS03120at 729.598 kb on - strand, within LRK53_RS03120at 729.633 kb on + strand, within LRK53_RS03120at 729.633 kb on + strand, within LRK53_RS03120at 729.633 kb on + strand, within LRK53_RS03120at 729.633 kb on + strand, within LRK53_RS03120at 729.633 kb on + strand, within LRK53_RS03120at 729.633 kb on + strand, within LRK53_RS03120at 729.634 kb on - strand, within LRK53_RS03120at 729.634 kb on - strand, within LRK53_RS03120at 730.155 kb on - strandat 730.291 kb on + strandat 730.292 kb on + strandat 730.292 kb on + strandat 730.292 kb on + strandat 730.292 kb on + strandat 730.292 kb on + strandat 730.292 kb on + strandat 730.292 kb on + strandat 730.293 kb on - strandat 730.293 kb on - strandat 730.293 kb on - strandat 730.293 kb on - strandat 730.293 kb on - strandat 730.296 kb on + strandat 730.296 kb on + strandat 730.296 kb on + strandat 730.297 kb on - strandat 730.297 kb on - strandat 730.297 kb on - strandat 730.333 kb on + strand, within LRK53_RS03125at 730.333 kb on + strand, within LRK53_RS03125at 730.333 kb on + strand, within LRK53_RS03125at 730.333 kb on + strand, within LRK53_RS03125at 730.333 kb on + strand, within LRK53_RS03125at 730.334 kb on - strand, within LRK53_RS03125at 730.334 kb on - strand, within LRK53_RS03125at 730.334 kb on - strand, within LRK53_RS03125at 730.336 kb on + strand, within LRK53_RS03125at 730.336 kb on + strand, within LRK53_RS03125at 730.336 kb on + strand, within LRK53_RS03125at 730.336 kb on + strand, within LRK53_RS03125at 730.336 kb on + strand, within LRK53_RS03125at 730.336 kb on + strand, within LRK53_RS03125at 730.336 kb on + strand, within LRK53_RS03125at 730.336 kb on + strand, within LRK53_RS03125at 730.336 kb on + strand, within LRK53_RS03125at 730.336 kb on + strand, within LRK53_RS03125at 730.336 kb on + strand, within LRK53_RS03125at 730.336 kb on + strand, within LRK53_RS03125at 730.336 kb on + strand, within LRK53_RS03125at 730.337 kb on - strand, within LRK53_RS03125at 730.337 kb on - strand, within LRK53_RS03125at 730.337 kb on - strand, within LRK53_RS03125at 730.337 kb on - strand, within LRK53_RS03125at 730.337 kb on - strand, within LRK53_RS03125at 730.337 kb on - strand, within LRK53_RS03125at 730.337 kb on - strand, within LRK53_RS03125at 730.337 kb on - strand, within LRK53_RS03125at 730.337 kb on - strand, within LRK53_RS03125at 730.337 kb on - strand, within LRK53_RS03125at 730.337 kb on - strand, within LRK53_RS03125at 730.343 kb on + strand, within LRK53_RS03125at 730.343 kb on + strand, within LRK53_RS03125at 730.343 kb on + strand, within LRK53_RS03125at 730.343 kb on + strand, within LRK53_RS03125at 730.343 kb on + strand, within LRK53_RS03125at 730.343 kb on + strand, within LRK53_RS03125at 730.343 kb on + strand, within LRK53_RS03125at 730.343 kb on + strand, within LRK53_RS03125at 730.343 kb on + strand, within LRK53_RS03125at 730.343 kb on + strand, within LRK53_RS03125at 730.343 kb on + strand, within LRK53_RS03125at 730.343 kb on + strand, within LRK53_RS03125at 730.344 kb on - strand, within LRK53_RS03125at 730.344 kb on - strand, within LRK53_RS03125at 730.344 kb on - strand, within LRK53_RS03125at 730.349 kb on + strand, within LRK53_RS03125at 730.349 kb on + strand, within LRK53_RS03125at 730.349 kb on + strand, within LRK53_RS03125at 730.349 kb on + strand, within LRK53_RS03125at 730.349 kb on + strand, within LRK53_RS03125at 730.349 kb on + strand, within LRK53_RS03125at 730.349 kb on + strand, within LRK53_RS03125at 730.349 kb on + strand, within LRK53_RS03125at 730.349 kb on + strand, within LRK53_RS03125at 730.349 kb on + strand, within LRK53_RS03125at 730.349 kb on + strand, within LRK53_RS03125at 730.349 kb on + strand, within LRK53_RS03125at 730.349 kb on + strand, within LRK53_RS03125at 730.349 kb on + strand, within LRK53_RS03125at 730.349 kb on + strand, within LRK53_RS03125at 730.349 kb on + strand, within LRK53_RS03125at 730.349 kb on + strand, within LRK53_RS03125at 730.349 kb on + strand, within LRK53_RS03125at 730.349 kb on + strand, within LRK53_RS03125at 730.349 kb on + strand, within LRK53_RS03125at 730.349 kb on + strand, within LRK53_RS03125at 730.349 kb on + strand, within LRK53_RS03125at 730.350 kb on - strand, within LRK53_RS03125at 730.350 kb on - strand, within LRK53_RS03125at 730.350 kb on - strand, within LRK53_RS03125at 730.350 kb on - strand, within LRK53_RS03125at 730.350 kb on - strand, within LRK53_RS03125at 730.350 kb on - strand, within LRK53_RS03125at 730.350 kb on - strand, within LRK53_RS03125at 730.350 kb on - strand, within LRK53_RS03125at 730.350 kb on - strand, within LRK53_RS03125at 730.350 kb on - strand, within LRK53_RS03125at 730.350 kb on - strand, within LRK53_RS03125at 730.350 kb on - strand, within LRK53_RS03125at 730.350 kb on - strand, within LRK53_RS03125at 730.350 kb on - strand, within LRK53_RS03125at 730.357 kb on + strand, within LRK53_RS03125at 730.357 kb on + strand, within LRK53_RS03125at 730.357 kb on + strand, within LRK53_RS03125at 730.357 kb on + strand, within LRK53_RS03125at 730.358 kb on - strand, within LRK53_RS03125at 730.358 kb on - strand, within LRK53_RS03125at 730.358 kb on - strand, within LRK53_RS03125at 730.360 kb on + strand, within LRK53_RS03125at 730.360 kb on + strand, within LRK53_RS03125at 730.360 kb on + strand, within LRK53_RS03125at 730.360 kb on + strand, within LRK53_RS03125at 730.361 kb on - strand, within LRK53_RS03125at 730.361 kb on - strand, within LRK53_RS03125at 730.361 kb on - strand, within LRK53_RS03125at 730.361 kb on - strand, within LRK53_RS03125at 730.361 kb on - strand, within LRK53_RS03125at 730.361 kb on - strand, within LRK53_RS03125at 730.361 kb on - strand, within LRK53_RS03125at 730.361 kb on - strand, within LRK53_RS03125at 730.361 kb on - strand, within LRK53_RS03125at 730.361 kb on - strand, within LRK53_RS03125at 730.361 kb on - strand, within LRK53_RS03125at 730.361 kb on - strand, within LRK53_RS03125at 730.452 kb on + strandat 730.452 kb on + strandat 730.452 kb on + strandat 730.453 kb on - strandat 730.453 kb on - strandat 730.453 kb on - strandat 730.453 kb on - strandat 730.531 kb on - strandat 730.531 kb on - strandat 730.555 kb on + strand, within LRK53_RS03130at 730.556 kb on - strand, within LRK53_RS03130at 730.556 kb on - strand, within LRK53_RS03130at 730.597 kb on + strand, within LRK53_RS03130at 730.597 kb on + strand, within LRK53_RS03130at 730.597 kb on + strand, within LRK53_RS03130at 730.597 kb on + strand, within LRK53_RS03130at 730.597 kb on + strand, within LRK53_RS03130at 730.597 kb on + strand, within LRK53_RS03130at 730.598 kb on - strand, within LRK53_RS03130at 730.598 kb on - strand, within LRK53_RS03130at 730.598 kb on - strand, within LRK53_RS03130at 730.598 kb on - strand, within LRK53_RS03130at 730.598 kb on - strand, within LRK53_RS03130at 730.598 kb on - strand, within LRK53_RS03130at 730.598 kb on - strand, within LRK53_RS03130at 730.598 kb on - strand, within LRK53_RS03130at 730.600 kb on + strand, within LRK53_RS03130at 730.600 kb on + strand, within LRK53_RS03130at 730.600 kb on + strand, within LRK53_RS03130at 730.674 kb on + strand, within LRK53_RS03130at 731.005 kb on + strand, within LRK53_RS03130at 731.005 kb on + strand, within LRK53_RS03130at 731.006 kb on - strand, within LRK53_RS03130at 731.006 kb on - strand, within LRK53_RS03130at 731.072 kb on + strand, within LRK53_RS03130at 731.072 kb on + strand, within LRK53_RS03130at 731.072 kb on + strand, within LRK53_RS03130at 731.072 kb on + strand, within LRK53_RS03130at 731.072 kb on + strand, within LRK53_RS03130at 731.072 kb on + strand, within LRK53_RS03130at 731.072 kb on + strand, within LRK53_RS03130at 731.072 kb on + strand, within LRK53_RS03130at 731.072 kb on + strand, within LRK53_RS03130at 731.072 kb on + strand, within LRK53_RS03130at 731.072 kb on + strand, within LRK53_RS03130at 731.073 kb on - strand, within LRK53_RS03130at 731.073 kb on - strand, within LRK53_RS03130at 731.073 kb on - strand, within LRK53_RS03130at 731.073 kb on - strand, within LRK53_RS03130at 731.073 kb on - strand, within LRK53_RS03130at 731.073 kb on - strand, within LRK53_RS03130at 731.073 kb on - strand, within LRK53_RS03130at 731.073 kb on - strand, within LRK53_RS03130at 731.073 kb on - strand, within LRK53_RS03130at 731.073 kb on - strand, within LRK53_RS03130at 731.073 kb on - strand, within LRK53_RS03130at 731.073 kb on - strand, within LRK53_RS03130at 731.158 kb on + strandat 731.236 kb on + strandat 731.236 kb on + strandat 731.237 kb on - strandat 731.299 kb on + strandat 731.300 kb on - strandat 731.300 kb on - strandat 731.386 kb on + strandat 731.386 kb on + strandat 731.386 kb on + strandat 731.386 kb on + strandat 731.386 kb on + strandat 731.387 kb on - strandat 731.387 kb on - strandat 731.387 kb on - strandat 731.387 kb on - strandat 731.387 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM;
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729,354 + LRK53_RS03120 0.48 +0.8
729,354 + LRK53_RS03120 0.48 -0.3
729,355 - LRK53_RS03120 0.48 -2.7
729,355 - LRK53_RS03120 0.48 -0.3
729,597 + LRK53_RS03120 0.63 -0.8
729,597 + LRK53_RS03120 0.63 -2.1
729,597 + LRK53_RS03120 0.63 +1.0
729,598 - LRK53_RS03120 0.63 -1.3
729,633 + LRK53_RS03120 0.65 -1.3
729,633 + LRK53_RS03120 0.65 -2.9
729,633 + LRK53_RS03120 0.65 -2.2
729,633 + LRK53_RS03120 0.65 -2.0
729,633 + LRK53_RS03120 0.65 +0.0
729,633 + LRK53_RS03120 0.65 +1.0
729,634 - LRK53_RS03120 0.65 +0.8
729,634 - LRK53_RS03120 0.65 -1.1
730,155 - +0.0
730,291 + -2.4
730,292 + -1.7
730,292 + +0.8
730,292 + -0.3
730,292 + -0.5
730,292 + -2.5
730,292 + +0.5
730,292 + +0.0
730,293 - -0.7
730,293 - +1.8
730,293 - -0.2
730,293 - -2.8
730,293 - -0.2
730,296 + -1.9
730,296 + -0.8
730,296 + -1.1
730,297 - -1.4
730,297 - +0.8
730,297 - -0.6
730,333 + LRK53_RS03125 0.14 -0.9
730,333 + LRK53_RS03125 0.14 -0.8
730,333 + LRK53_RS03125 0.14 +0.8
730,333 + LRK53_RS03125 0.14 -0.3
730,333 + LRK53_RS03125 0.14 -0.5
730,334 - LRK53_RS03125 0.15 -0.2
730,334 - LRK53_RS03125 0.15 -1.1
730,334 - LRK53_RS03125 0.15 -0.3
730,336 + LRK53_RS03125 0.17 +0.0
730,336 + LRK53_RS03125 0.17 -3.4
730,336 + LRK53_RS03125 0.17 -2.4
730,336 + LRK53_RS03125 0.17 -1.0
730,336 + LRK53_RS03125 0.17 -0.6
730,336 + LRK53_RS03125 0.17 -2.8
730,336 + LRK53_RS03125 0.17 -0.8
730,336 + LRK53_RS03125 0.17 -0.4
730,336 + LRK53_RS03125 0.17 -0.8
730,336 + LRK53_RS03125 0.17 -0.1
730,336 + LRK53_RS03125 0.17 -1.5
730,336 + LRK53_RS03125 0.17 +0.0
730,336 + LRK53_RS03125 0.17 -1.1
730,337 - LRK53_RS03125 0.17 -0.8
730,337 - LRK53_RS03125 0.17 +2.5
730,337 - LRK53_RS03125 0.17 -0.8
730,337 - LRK53_RS03125 0.17 -0.9
730,337 - LRK53_RS03125 0.17 +0.2
730,337 - LRK53_RS03125 0.17 +0.7
730,337 - LRK53_RS03125 0.17 -3.2
730,337 - LRK53_RS03125 0.17 -0.4
730,337 - LRK53_RS03125 0.17 +0.4
730,337 - LRK53_RS03125 0.17 -0.5
730,337 - LRK53_RS03125 0.17 -0.0
730,343 + LRK53_RS03125 0.22 -0.7
730,343 + LRK53_RS03125 0.22 +0.6
730,343 + LRK53_RS03125 0.22 -2.2
730,343 + LRK53_RS03125 0.22 +0.0
730,343 + LRK53_RS03125 0.22 +0.4
730,343 + LRK53_RS03125 0.22 -2.2
730,343 + LRK53_RS03125 0.22 +0.1
730,343 + LRK53_RS03125 0.22 +0.5
730,343 + LRK53_RS03125 0.22 -1.0
730,343 + LRK53_RS03125 0.22 -3.7
730,343 + LRK53_RS03125 0.22 -0.8
730,343 + LRK53_RS03125 0.22 -0.5
730,344 - LRK53_RS03125 0.22 -3.9
730,344 - LRK53_RS03125 0.22 -1.9
730,344 - LRK53_RS03125 0.22 +0.1
730,349 + LRK53_RS03125 0.26 -2.8
730,349 + LRK53_RS03125 0.26 -2.5
730,349 + LRK53_RS03125 0.26 -0.1
730,349 + LRK53_RS03125 0.26 -1.4
730,349 + LRK53_RS03125 0.26 +0.2
730,349 + LRK53_RS03125 0.26 -0.8
730,349 + LRK53_RS03125 0.26 -0.5
730,349 + LRK53_RS03125 0.26 -0.9
730,349 + LRK53_RS03125 0.26 -1.0
730,349 + LRK53_RS03125 0.26 -1.7
730,349 + LRK53_RS03125 0.26 -1.9
730,349 + LRK53_RS03125 0.26 +1.6
730,349 + LRK53_RS03125 0.26 -1.3
730,349 + LRK53_RS03125 0.26 -0.2
730,349 + LRK53_RS03125 0.26 +0.5
730,349 + LRK53_RS03125 0.26 -1.7
730,349 + LRK53_RS03125 0.26 +0.5
730,349 + LRK53_RS03125 0.26 +0.9
730,349 + LRK53_RS03125 0.26 +0.2
730,349 + LRK53_RS03125 0.26 -1.7
730,349 + LRK53_RS03125 0.26 -0.1
730,349 + LRK53_RS03125 0.26 +0.0
730,350 - LRK53_RS03125 0.27 -1.3
730,350 - LRK53_RS03125 0.27 +0.1
730,350 - LRK53_RS03125 0.27 -2.0
730,350 - LRK53_RS03125 0.27 +1.8
730,350 - LRK53_RS03125 0.27 -1.1
730,350 - LRK53_RS03125 0.27 +0.0
730,350 - LRK53_RS03125 0.27 +1.1
730,350 - LRK53_RS03125 0.27 -0.3
730,350 - LRK53_RS03125 0.27 -2.6
730,350 - LRK53_RS03125 0.27 -1.8
730,350 - LRK53_RS03125 0.27 -0.7
730,350 - LRK53_RS03125 0.27 -0.6
730,350 - LRK53_RS03125 0.27 +0.2
730,350 - LRK53_RS03125 0.27 -2.6
730,357 + LRK53_RS03125 0.32 -1.1
730,357 + LRK53_RS03125 0.32 -1.5
730,357 + LRK53_RS03125 0.32 +0.0
730,357 + LRK53_RS03125 0.32 -1.7
730,358 - LRK53_RS03125 0.33 -2.3
730,358 - LRK53_RS03125 0.33 +0.0
730,358 - LRK53_RS03125 0.33 -0.5
730,360 + LRK53_RS03125 0.34 +1.1
730,360 + LRK53_RS03125 0.34 -3.2
730,360 + LRK53_RS03125 0.34 -1.2
730,360 + LRK53_RS03125 0.34 +0.2
730,361 - LRK53_RS03125 0.35 +0.0
730,361 - LRK53_RS03125 0.35 +0.8
730,361 - LRK53_RS03125 0.35 -2.9
730,361 - LRK53_RS03125 0.35 -0.3
730,361 - LRK53_RS03125 0.35 -0.3
730,361 - LRK53_RS03125 0.35 -2.6
730,361 - LRK53_RS03125 0.35 -2.0
730,361 - LRK53_RS03125 0.35 -0.2
730,361 - LRK53_RS03125 0.35 -1.5
730,361 - LRK53_RS03125 0.35 -0.7
730,361 - LRK53_RS03125 0.35 -0.8
730,361 - LRK53_RS03125 0.35 -0.5
730,452 + -1.8
730,452 + -1.6
730,452 + -0.7
730,453 - +0.2
730,453 - -1.0
730,453 - +0.2
730,453 - -1.4
730,531 - +0.1
730,531 - +0.1
730,555 + LRK53_RS03130 0.13 +2.3
730,556 - LRK53_RS03130 0.13 -1.4
730,556 - LRK53_RS03130 0.13 -1.6
730,597 + LRK53_RS03130 0.19 +0.2
730,597 + LRK53_RS03130 0.19 -0.8
730,597 + LRK53_RS03130 0.19 +0.7
730,597 + LRK53_RS03130 0.19 -1.3
730,597 + LRK53_RS03130 0.19 -0.2
730,597 + LRK53_RS03130 0.19 -0.6
730,598 - LRK53_RS03130 0.19 -1.3
730,598 - LRK53_RS03130 0.19 -0.6
730,598 - LRK53_RS03130 0.19 -0.5
730,598 - LRK53_RS03130 0.19 -1.2
730,598 - LRK53_RS03130 0.19 -1.5
730,598 - LRK53_RS03130 0.19 -2.6
730,598 - LRK53_RS03130 0.19 +1.2
730,598 - LRK53_RS03130 0.19 -1.5
730,600 + LRK53_RS03130 0.20 -0.5
730,600 + LRK53_RS03130 0.20 -2.2
730,600 + LRK53_RS03130 0.20 -2.4
730,674 + LRK53_RS03130 0.30 -2.3
731,005 + LRK53_RS03130 0.77 +0.5
731,005 + LRK53_RS03130 0.77 +0.0
731,006 - LRK53_RS03130 0.77 -0.9
731,006 - LRK53_RS03130 0.77 -1.0
731,072 + LRK53_RS03130 0.86 -0.2
731,072 + LRK53_RS03130 0.86 +0.7
731,072 + LRK53_RS03130 0.86 +1.2
731,072 + LRK53_RS03130 0.86 -0.5
731,072 + LRK53_RS03130 0.86 -0.8
731,072 + LRK53_RS03130 0.86 -1.4
731,072 + LRK53_RS03130 0.86 +0.2
731,072 + LRK53_RS03130 0.86 -0.3
731,072 + LRK53_RS03130 0.86 +2.8
731,072 + LRK53_RS03130 0.86 -0.2
731,072 + LRK53_RS03130 0.86 -1.1
731,073 - LRK53_RS03130 0.86 -0.3
731,073 - LRK53_RS03130 0.86 -0.5
731,073 - LRK53_RS03130 0.86 +0.5
731,073 - LRK53_RS03130 0.86 -0.3
731,073 - LRK53_RS03130 0.86 +0.5
731,073 - LRK53_RS03130 0.86 +1.3
731,073 - LRK53_RS03130 0.86 +0.1
731,073 - LRK53_RS03130 0.86 +1.2
731,073 - LRK53_RS03130 0.86 -0.5
731,073 - LRK53_RS03130 0.86 +0.7
731,073 - LRK53_RS03130 0.86 -1.9
731,073 - LRK53_RS03130 0.86 -0.7
731,158 + -1.0
731,236 + -0.9
731,236 + +0.2
731,237 - +1.4
731,299 + -0.5
731,300 - +1.0
731,300 - -0.7
731,386 + -0.6
731,386 + -0.9
731,386 + -1.2
731,386 + +2.8
731,386 + -0.6
731,387 - +0.2
731,387 - -1.3
731,387 - -0.2
731,387 - +0.1
731,387 - -0.5

Or see this region's nucleotide sequence