Experiment: biofilm; Day1; NLDM;
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03095 and LRK53_RS03100 are separated by 261 nucleotides LRK53_RS03100 and LRK53_RS03105 overlap by 4 nucleotides LRK53_RS03105 and LRK53_RS03110 are separated by 157 nucleotides
LRK53_RS03095: LRK53_RS03095 - dihydroxy-acid dehydratase, at 722,284 to 724,005
_RS03095
LRK53_RS03100: LRK53_RS03100 - 3-isopropylmalate dehydrogenase, at 724,267 to 725,364
_RS03100
LRK53_RS03105: LRK53_RS03105 - 3-isopropylmalate dehydratase small subunit, at 725,361 to 726,005
_RS03105
LRK53_RS03110: LRK53_RS03110 - 3-isopropylmalate dehydratase large subunit, at 726,163 to 727,575
_RS03110
Position (kb) 724
725
726 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 723.584 kb on + strand, within LRK53_RS03095 at 723.741 kb on - strand, within LRK53_RS03095 at 723.920 kb on - strand at 724.111 kb on + strand at 724.111 kb on + strand at 724.111 kb on + strand at 724.111 kb on + strand at 724.112 kb on - strand at 724.112 kb on - strand at 724.554 kb on - strand, within LRK53_RS03100 at 724.780 kb on + strand, within LRK53_RS03100 at 724.892 kb on + strand, within LRK53_RS03100 at 724.892 kb on + strand, within LRK53_RS03100 at 724.892 kb on + strand, within LRK53_RS03100 at 724.892 kb on + strand, within LRK53_RS03100 at 724.892 kb on + strand, within LRK53_RS03100 at 724.892 kb on + strand, within LRK53_RS03100 at 724.892 kb on + strand, within LRK53_RS03100 at 724.892 kb on + strand, within LRK53_RS03100 at 724.893 kb on - strand, within LRK53_RS03100 at 724.893 kb on - strand, within LRK53_RS03100 at 724.893 kb on - strand, within LRK53_RS03100 at 724.893 kb on - strand, within LRK53_RS03100 at 724.893 kb on - strand, within LRK53_RS03100 at 724.893 kb on - strand, within LRK53_RS03100 at 724.893 kb on - strand, within LRK53_RS03100 at 724.893 kb on - strand, within LRK53_RS03100 at 724.943 kb on + strand, within LRK53_RS03100 at 724.943 kb on + strand, within LRK53_RS03100 at 724.943 kb on + strand, within LRK53_RS03100 at 724.943 kb on + strand, within LRK53_RS03100 at 724.943 kb on + strand, within LRK53_RS03100 at 724.943 kb on + strand, within LRK53_RS03100 at 724.943 kb on + strand, within LRK53_RS03100 at 724.943 kb on + strand, within LRK53_RS03100 at 724.943 kb on + strand, within LRK53_RS03100 at 724.943 kb on + strand, within LRK53_RS03100 at 724.943 kb on + strand, within LRK53_RS03100 at 724.943 kb on + strand, within LRK53_RS03100 at 724.944 kb on - strand, within LRK53_RS03100 at 724.944 kb on - strand, within LRK53_RS03100 at 724.944 kb on - strand, within LRK53_RS03100 at 724.944 kb on - strand, within LRK53_RS03100 at 724.944 kb on - strand, within LRK53_RS03100 at 724.944 kb on - strand, within LRK53_RS03100 at 724.944 kb on - strand, within LRK53_RS03100 at 724.944 kb on - strand, within LRK53_RS03100 at 724.944 kb on - strand, within LRK53_RS03100 at 724.975 kb on + strand, within LRK53_RS03100 at 724.975 kb on + strand, within LRK53_RS03100 at 724.975 kb on + strand, within LRK53_RS03100 at 724.975 kb on + strand, within LRK53_RS03100 at 724.975 kb on + strand, within LRK53_RS03100 at 724.975 kb on + strand, within LRK53_RS03100 at 724.975 kb on + strand, within LRK53_RS03100 at 724.975 kb on + strand, within LRK53_RS03100 at 724.975 kb on + strand, within LRK53_RS03100 at 724.975 kb on + strand, within LRK53_RS03100 at 724.975 kb on + strand, within LRK53_RS03100 at 724.976 kb on - strand, within LRK53_RS03100 at 724.976 kb on - strand, within LRK53_RS03100 at 724.976 kb on - strand, within LRK53_RS03100 at 724.976 kb on - strand, within LRK53_RS03100 at 724.976 kb on - strand, within LRK53_RS03100 at 724.976 kb on - strand, within LRK53_RS03100 at 724.976 kb on - strand, within LRK53_RS03100 at 724.976 kb on - strand, within LRK53_RS03100 at 724.976 kb on - strand, within LRK53_RS03100 at 724.976 kb on - strand, within LRK53_RS03100 at 724.976 kb on - strand, within LRK53_RS03100 at 724.976 kb on - strand, within LRK53_RS03100 at 724.976 kb on - strand, within LRK53_RS03100 at 724.976 kb on - strand, within LRK53_RS03100 at 724.976 kb on - strand, within LRK53_RS03100 at 725.035 kb on + strand, within LRK53_RS03100 at 725.035 kb on + strand, within LRK53_RS03100 at 725.035 kb on + strand, within LRK53_RS03100 at 725.036 kb on - strand, within LRK53_RS03100 at 725.036 kb on - strand, within LRK53_RS03100 at 725.036 kb on - strand, within LRK53_RS03100 at 725.036 kb on - strand, within LRK53_RS03100 at 725.036 kb on - strand, within LRK53_RS03100 at 725.060 kb on + strand, within LRK53_RS03100 at 725.061 kb on - strand, within LRK53_RS03100 at 725.061 kb on - strand, within LRK53_RS03100 at 725.061 kb on - strand, within LRK53_RS03100 at 725.061 kb on - strand, within LRK53_RS03100 at 725.353 kb on - strand at 725.370 kb on + strand at 725.482 kb on + strand, within LRK53_RS03105 at 725.483 kb on - strand, within LRK53_RS03105 at 725.483 kb on - strand, within LRK53_RS03105 at 725.483 kb on - strand, within LRK53_RS03105 at 725.572 kb on + strand, within LRK53_RS03105 at 725.572 kb on + strand, within LRK53_RS03105 at 725.572 kb on + strand, within LRK53_RS03105 at 725.572 kb on + strand, within LRK53_RS03105 at 725.572 kb on + strand, within LRK53_RS03105 at 725.572 kb on + strand, within LRK53_RS03105 at 725.572 kb on + strand, within LRK53_RS03105 at 725.572 kb on + strand, within LRK53_RS03105 at 725.572 kb on + strand, within LRK53_RS03105 at 725.572 kb on + strand, within LRK53_RS03105 at 725.572 kb on + strand, within LRK53_RS03105 at 725.572 kb on + strand, within LRK53_RS03105 at 725.572 kb on + strand, within LRK53_RS03105 at 725.572 kb on + strand, within LRK53_RS03105 at 725.573 kb on - strand, within LRK53_RS03105 at 725.573 kb on - strand, within LRK53_RS03105 at 725.573 kb on - strand, within LRK53_RS03105 at 725.573 kb on - strand, within LRK53_RS03105 at 725.573 kb on - strand, within LRK53_RS03105 at 725.573 kb on - strand, within LRK53_RS03105 at 725.573 kb on - strand, within LRK53_RS03105 at 725.573 kb on - strand, within LRK53_RS03105 at 725.573 kb on - strand, within LRK53_RS03105 at 725.573 kb on - strand, within LRK53_RS03105 at 725.573 kb on - strand, within LRK53_RS03105 at 725.573 kb on - strand, within LRK53_RS03105 at 725.573 kb on - strand, within LRK53_RS03105 at 725.573 kb on - strand, within LRK53_RS03105 at 725.573 kb on - strand, within LRK53_RS03105 at 725.573 kb on - strand, within LRK53_RS03105 at 725.573 kb on - strand, within LRK53_RS03105 at 725.573 kb on - strand, within LRK53_RS03105 at 725.573 kb on - strand, within LRK53_RS03105 at 725.573 kb on - strand, within LRK53_RS03105 at 725.573 kb on - strand, within LRK53_RS03105 at 725.573 kb on - strand, within LRK53_RS03105 at 725.573 kb on - strand, within LRK53_RS03105 at 725.728 kb on + strand, within LRK53_RS03105 at 725.729 kb on - strand, within LRK53_RS03105 at 725.729 kb on - strand, within LRK53_RS03105 at 725.729 kb on - strand, within LRK53_RS03105 at 726.155 kb on - strand at 726.185 kb on + strand at 726.186 kb on - strand at 726.186 kb on - strand at 726.186 kb on - strand at 726.186 kb on - strand at 726.186 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; remove 723,584 + LRK53_RS03095 0.75 -1.7 723,741 - LRK53_RS03095 0.85 -0.8 723,920 - +0.7 724,111 + -1.2 724,111 + -0.5 724,111 + +0.0 724,111 + -1.5 724,112 - -1.3 724,112 - -0.3 724,554 - LRK53_RS03100 0.26 -1.1 724,780 + LRK53_RS03100 0.47 -2.1 724,892 + LRK53_RS03100 0.57 -2.5 724,892 + LRK53_RS03100 0.57 -0.9 724,892 + LRK53_RS03100 0.57 -1.1 724,892 + LRK53_RS03100 0.57 +0.9 724,892 + LRK53_RS03100 0.57 -2.0 724,892 + LRK53_RS03100 0.57 -1.4 724,892 + LRK53_RS03100 0.57 +0.5 724,892 + LRK53_RS03100 0.57 -1.9 724,893 - LRK53_RS03100 0.57 -0.2 724,893 - LRK53_RS03100 0.57 -0.8 724,893 - LRK53_RS03100 0.57 -1.0 724,893 - LRK53_RS03100 0.57 +1.7 724,893 - LRK53_RS03100 0.57 -0.5 724,893 - LRK53_RS03100 0.57 -1.3 724,893 - LRK53_RS03100 0.57 -1.1 724,893 - LRK53_RS03100 0.57 +0.2 724,943 + LRK53_RS03100 0.62 -1.5 724,943 + LRK53_RS03100 0.62 -0.5 724,943 + LRK53_RS03100 0.62 -1.9 724,943 + LRK53_RS03100 0.62 -1.7 724,943 + LRK53_RS03100 0.62 -3.2 724,943 + LRK53_RS03100 0.62 -1.7 724,943 + LRK53_RS03100 0.62 -0.6 724,943 + LRK53_RS03100 0.62 -0.8 724,943 + LRK53_RS03100 0.62 -0.5 724,943 + LRK53_RS03100 0.62 -2.1 724,943 + LRK53_RS03100 0.62 -0.9 724,943 + LRK53_RS03100 0.62 +2.1 724,944 - LRK53_RS03100 0.62 -0.2 724,944 - LRK53_RS03100 0.62 +0.5 724,944 - LRK53_RS03100 0.62 -1.0 724,944 - LRK53_RS03100 0.62 -1.5 724,944 - LRK53_RS03100 0.62 -0.8 724,944 - LRK53_RS03100 0.62 +1.2 724,944 - LRK53_RS03100 0.62 -2.3 724,944 - LRK53_RS03100 0.62 -1.4 724,944 - LRK53_RS03100 0.62 -1.1 724,975 + LRK53_RS03100 0.64 -1.0 724,975 + LRK53_RS03100 0.64 +0.6 724,975 + LRK53_RS03100 0.64 +0.1 724,975 + LRK53_RS03100 0.64 -1.3 724,975 + LRK53_RS03100 0.64 -2.4 724,975 + LRK53_RS03100 0.64 -0.8 724,975 + LRK53_RS03100 0.64 +0.6 724,975 + LRK53_RS03100 0.64 -1.3 724,975 + LRK53_RS03100 0.64 -1.3 724,975 + LRK53_RS03100 0.64 -0.9 724,975 + LRK53_RS03100 0.64 -1.9 724,976 - LRK53_RS03100 0.65 +0.2 724,976 - LRK53_RS03100 0.65 -1.7 724,976 - LRK53_RS03100 0.65 -0.8 724,976 - LRK53_RS03100 0.65 -0.5 724,976 - LRK53_RS03100 0.65 -1.1 724,976 - LRK53_RS03100 0.65 -0.5 724,976 - LRK53_RS03100 0.65 +1.6 724,976 - LRK53_RS03100 0.65 +0.8 724,976 - LRK53_RS03100 0.65 +0.4 724,976 - LRK53_RS03100 0.65 -0.6 724,976 - LRK53_RS03100 0.65 +0.0 724,976 - LRK53_RS03100 0.65 +0.0 724,976 - LRK53_RS03100 0.65 +1.3 724,976 - LRK53_RS03100 0.65 -0.4 724,976 - LRK53_RS03100 0.65 +0.2 725,035 + LRK53_RS03100 0.70 -1.0 725,035 + LRK53_RS03100 0.70 -0.9 725,035 + LRK53_RS03100 0.70 +1.5 725,036 - LRK53_RS03100 0.70 +1.4 725,036 - LRK53_RS03100 0.70 -1.1 725,036 - LRK53_RS03100 0.70 -0.1 725,036 - LRK53_RS03100 0.70 -1.5 725,036 - LRK53_RS03100 0.70 -0.6 725,060 + LRK53_RS03100 0.72 -1.0 725,061 - LRK53_RS03100 0.72 -1.1 725,061 - LRK53_RS03100 0.72 -0.1 725,061 - LRK53_RS03100 0.72 -2.3 725,061 - LRK53_RS03100 0.72 -0.5 725,353 - +0.5 725,370 + -1.1 725,482 + LRK53_RS03105 0.19 -0.2 725,483 - LRK53_RS03105 0.19 +0.2 725,483 - LRK53_RS03105 0.19 -1.8 725,483 - LRK53_RS03105 0.19 -0.0 725,572 + LRK53_RS03105 0.33 +0.6 725,572 + LRK53_RS03105 0.33 +0.7 725,572 + LRK53_RS03105 0.33 -1.6 725,572 + LRK53_RS03105 0.33 -1.5 725,572 + LRK53_RS03105 0.33 -1.1 725,572 + LRK53_RS03105 0.33 -0.4 725,572 + LRK53_RS03105 0.33 -0.9 725,572 + LRK53_RS03105 0.33 +1.7 725,572 + LRK53_RS03105 0.33 +1.0 725,572 + LRK53_RS03105 0.33 -0.2 725,572 + LRK53_RS03105 0.33 +0.1 725,572 + LRK53_RS03105 0.33 -3.2 725,572 + LRK53_RS03105 0.33 -2.4 725,572 + LRK53_RS03105 0.33 -1.0 725,573 - LRK53_RS03105 0.33 +0.2 725,573 - LRK53_RS03105 0.33 -1.2 725,573 - LRK53_RS03105 0.33 -0.7 725,573 - LRK53_RS03105 0.33 -1.9 725,573 - LRK53_RS03105 0.33 +1.2 725,573 - LRK53_RS03105 0.33 -0.2 725,573 - LRK53_RS03105 0.33 -0.5 725,573 - LRK53_RS03105 0.33 -0.8 725,573 - LRK53_RS03105 0.33 -0.2 725,573 - LRK53_RS03105 0.33 -0.0 725,573 - LRK53_RS03105 0.33 -0.2 725,573 - LRK53_RS03105 0.33 +1.0 725,573 - LRK53_RS03105 0.33 -0.3 725,573 - LRK53_RS03105 0.33 +0.1 725,573 - LRK53_RS03105 0.33 -1.5 725,573 - LRK53_RS03105 0.33 +0.7 725,573 - LRK53_RS03105 0.33 -0.3 725,573 - LRK53_RS03105 0.33 -3.1 725,573 - LRK53_RS03105 0.33 +0.8 725,573 - LRK53_RS03105 0.33 -1.3 725,573 - LRK53_RS03105 0.33 +0.0 725,573 - LRK53_RS03105 0.33 -0.1 725,573 - LRK53_RS03105 0.33 -1.2 725,728 + LRK53_RS03105 0.57 -2.9 725,729 - LRK53_RS03105 0.57 +0.0 725,729 - LRK53_RS03105 0.57 +0.6 725,729 - LRK53_RS03105 0.57 -1.2 726,155 - +0.1 726,185 + +0.5 726,186 - -1.4 726,186 - -0.9 726,186 - -1.6 726,186 - +0.1 726,186 - +0.1
Or see this region's nucleotide sequence