Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS43875

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS43870 and QEN71_RS43875 are separated by 4 nucleotidesQEN71_RS43875 and QEN71_RS43880 are separated by 92 nucleotidesQEN71_RS43880 and QEN71_RS43885 overlap by 4 nucleotides QEN71_RS43870: QEN71_RS43870 - hypothetical protein, at 252,521 to 253,699 _RS43870 QEN71_RS43875: QEN71_RS43875 - hypothetical protein, at 253,704 to 254,177 _RS43875 QEN71_RS43880: QEN71_RS43880 - PRTRC system ThiF family protein, at 254,270 to 255,088 _RS43880 QEN71_RS43885: QEN71_RS43885 - PRTRC system protein A, at 255,085 to 255,720 _RS43885 Position (kb) 253 254 255Strain fitness (log2 ratio) -3 -2 -1 0 1at 252.735 kb on + strand, within QEN71_RS43870at 252.735 kb on + strand, within QEN71_RS43870at 252.736 kb on - strand, within QEN71_RS43870at 252.736 kb on - strand, within QEN71_RS43870at 252.736 kb on - strand, within QEN71_RS43870at 252.737 kb on + strand, within QEN71_RS43870at 252.737 kb on + strand, within QEN71_RS43870at 252.737 kb on + strand, within QEN71_RS43870at 252.738 kb on - strand, within QEN71_RS43870at 252.738 kb on - strand, within QEN71_RS43870at 252.862 kb on + strand, within QEN71_RS43870at 252.863 kb on - strand, within QEN71_RS43870at 252.863 kb on - strand, within QEN71_RS43870at 252.903 kb on + strand, within QEN71_RS43870at 253.008 kb on + strand, within QEN71_RS43870at 253.008 kb on + strand, within QEN71_RS43870at 253.008 kb on + strand, within QEN71_RS43870at 253.009 kb on - strand, within QEN71_RS43870at 253.009 kb on - strand, within QEN71_RS43870at 253.009 kb on - strand, within QEN71_RS43870at 253.009 kb on - strand, within QEN71_RS43870at 253.009 kb on - strand, within QEN71_RS43870at 253.059 kb on - strand, within QEN71_RS43870at 253.142 kb on + strand, within QEN71_RS43870at 253.144 kb on - strand, within QEN71_RS43870at 253.369 kb on - strand, within QEN71_RS43870at 253.386 kb on + strand, within QEN71_RS43870at 253.387 kb on - strand, within QEN71_RS43870at 253.777 kb on + strand, within QEN71_RS43875at 253.777 kb on + strand, within QEN71_RS43875at 253.778 kb on - strand, within QEN71_RS43875at 253.778 kb on - strand, within QEN71_RS43875at 253.778 kb on - strand, within QEN71_RS43875at 254.078 kb on - strand, within QEN71_RS43875at 254.092 kb on + strand, within QEN71_RS43875at 254.092 kb on + strand, within QEN71_RS43875at 254.093 kb on - strand, within QEN71_RS43875at 254.093 kb on - strand, within QEN71_RS43875at 254.241 kb on + strandat 254.241 kb on + strandat 254.241 kb on + strandat 254.241 kb on + strandat 254.242 kb on - strandat 254.242 kb on - strandat 254.242 kb on - strandat 254.244 kb on - strandat 254.334 kb on + strandat 254.335 kb on - strandat 254.483 kb on - strand, within QEN71_RS43880at 254.534 kb on - strand, within QEN71_RS43880at 254.576 kb on + strand, within QEN71_RS43880at 254.577 kb on - strand, within QEN71_RS43880at 254.585 kb on + strand, within QEN71_RS43880at 254.585 kb on + strand, within QEN71_RS43880at 254.586 kb on - strand, within QEN71_RS43880at 254.671 kb on - strand, within QEN71_RS43880at 254.673 kb on + strand, within QEN71_RS43880at 254.673 kb on + strand, within QEN71_RS43880at 254.673 kb on + strand, within QEN71_RS43880at 254.674 kb on - strand, within QEN71_RS43880at 254.674 kb on - strand, within QEN71_RS43880at 254.674 kb on - strand, within QEN71_RS43880at 254.832 kb on - strand, within QEN71_RS43880at 254.850 kb on + strand, within QEN71_RS43880at 254.850 kb on + strand, within QEN71_RS43880at 254.850 kb on + strand, within QEN71_RS43880at 254.850 kb on + strand, within QEN71_RS43880at 254.851 kb on - strand, within QEN71_RS43880at 254.851 kb on - strand, within QEN71_RS43880at 254.919 kb on + strand, within QEN71_RS43880at 254.920 kb on - strand, within QEN71_RS43880at 254.920 kb on - strand, within QEN71_RS43880at 255.089 kb on - strandat 255.089 kb on - strandat 255.089 kb on - strandat 255.089 kb on - strandat 255.089 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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252,735 + QEN71_RS43870 0.18 -0.4
252,735 + QEN71_RS43870 0.18 -0.9
252,736 - QEN71_RS43870 0.18 -0.4
252,736 - QEN71_RS43870 0.18 -0.2
252,736 - QEN71_RS43870 0.18 -0.4
252,737 + QEN71_RS43870 0.18 -0.9
252,737 + QEN71_RS43870 0.18 -3.0
252,737 + QEN71_RS43870 0.18 -0.2
252,738 - QEN71_RS43870 0.18 +1.0
252,738 - QEN71_RS43870 0.18 +0.3
252,862 + QEN71_RS43870 0.29 +0.8
252,863 - QEN71_RS43870 0.29 -1.0
252,863 - QEN71_RS43870 0.29 +0.2
252,903 + QEN71_RS43870 0.32 +0.5
253,008 + QEN71_RS43870 0.41 +1.6
253,008 + QEN71_RS43870 0.41 +1.1
253,008 + QEN71_RS43870 0.41 -0.2
253,009 - QEN71_RS43870 0.41 +0.6
253,009 - QEN71_RS43870 0.41 -0.1
253,009 - QEN71_RS43870 0.41 +0.4
253,009 - QEN71_RS43870 0.41 -1.2
253,009 - QEN71_RS43870 0.41 -0.4
253,059 - QEN71_RS43870 0.46 -0.4
253,142 + QEN71_RS43870 0.53 +0.2
253,144 - QEN71_RS43870 0.53 -0.4
253,369 - QEN71_RS43870 0.72 +0.8
253,386 + QEN71_RS43870 0.73 -0.3
253,387 - QEN71_RS43870 0.73 -0.4
253,777 + QEN71_RS43875 0.15 -0.2
253,777 + QEN71_RS43875 0.15 -0.9
253,778 - QEN71_RS43875 0.16 +0.6
253,778 - QEN71_RS43875 0.16 -0.8
253,778 - QEN71_RS43875 0.16 -0.0
254,078 - QEN71_RS43875 0.79 -1.2
254,092 + QEN71_RS43875 0.82 -1.8
254,092 + QEN71_RS43875 0.82 +1.2
254,093 - QEN71_RS43875 0.82 -0.3
254,093 - QEN71_RS43875 0.82 -1.6
254,241 + +0.5
254,241 + -0.3
254,241 + +0.5
254,241 + -0.0
254,242 - -1.0
254,242 - -0.0
254,242 - -0.0
254,244 - -0.6
254,334 + +0.3
254,335 - +0.8
254,483 - QEN71_RS43880 0.26 -1.7
254,534 - QEN71_RS43880 0.32 -2.1
254,576 + QEN71_RS43880 0.37 +0.0
254,577 - QEN71_RS43880 0.37 -0.3
254,585 + QEN71_RS43880 0.38 -0.8
254,585 + QEN71_RS43880 0.38 +0.0
254,586 - QEN71_RS43880 0.39 -0.6
254,671 - QEN71_RS43880 0.49 -1.2
254,673 + QEN71_RS43880 0.49 -0.4
254,673 + QEN71_RS43880 0.49 -0.8
254,673 + QEN71_RS43880 0.49 +0.8
254,674 - QEN71_RS43880 0.49 -0.4
254,674 - QEN71_RS43880 0.49 -1.4
254,674 - QEN71_RS43880 0.49 +1.1
254,832 - QEN71_RS43880 0.69 +0.0
254,850 + QEN71_RS43880 0.71 +0.9
254,850 + QEN71_RS43880 0.71 -0.2
254,850 + QEN71_RS43880 0.71 -2.1
254,850 + QEN71_RS43880 0.71 -0.1
254,851 - QEN71_RS43880 0.71 -0.5
254,851 - QEN71_RS43880 0.71 +1.5
254,919 + QEN71_RS43880 0.79 -0.0
254,920 - QEN71_RS43880 0.79 -0.6
254,920 - QEN71_RS43880 0.79 -0.0
255,089 - +0.5
255,089 - +0.6
255,089 - +0.1
255,089 - -1.1
255,089 - -0.0

Or see this region's nucleotide sequence