Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS41285

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS41280 and QEN71_RS41285 are separated by 146 nucleotidesQEN71_RS41285 and QEN71_RS41290 are separated by 27 nucleotides QEN71_RS41280: QEN71_RS41280 - DNA-binding transcriptional regulator DsdC, at 330,294 to 331,235 _RS41280 QEN71_RS41285: QEN71_RS41285 - aldehyde dehydrogenase, at 331,382 to 332,881 _RS41285 QEN71_RS41290: QEN71_RS41290 - dihydrodipicolinate synthase family protein, at 332,909 to 333,820 _RS41290 Position (kb) 331 332 333Strain fitness (log2 ratio) -2 -1 0 1 2at 330.383 kb on + strandat 330.384 kb on - strandat 330.441 kb on - strand, within QEN71_RS41280at 330.608 kb on + strand, within QEN71_RS41280at 330.616 kb on - strand, within QEN71_RS41280at 330.792 kb on + strand, within QEN71_RS41280at 330.793 kb on - strand, within QEN71_RS41280at 330.793 kb on - strand, within QEN71_RS41280at 330.814 kb on + strand, within QEN71_RS41280at 330.837 kb on + strand, within QEN71_RS41280at 330.837 kb on + strand, within QEN71_RS41280at 331.019 kb on + strand, within QEN71_RS41280at 331.019 kb on + strand, within QEN71_RS41280at 331.022 kb on + strand, within QEN71_RS41280at 331.139 kb on + strand, within QEN71_RS41280at 331.139 kb on + strand, within QEN71_RS41280at 331.139 kb on + strand, within QEN71_RS41280at 331.139 kb on + strand, within QEN71_RS41280at 331.139 kb on + strand, within QEN71_RS41280at 331.140 kb on - strand, within QEN71_RS41280at 331.140 kb on - strand, within QEN71_RS41280at 331.143 kb on + strandat 331.143 kb on + strandat 331.146 kb on + strandat 331.147 kb on - strandat 331.205 kb on - strandat 331.335 kb on + strandat 331.335 kb on + strandat 331.335 kb on + strandat 331.335 kb on + strandat 331.344 kb on + strandat 331.402 kb on + strandat 331.419 kb on + strandat 331.473 kb on + strandat 331.555 kb on + strand, within QEN71_RS41285at 331.555 kb on + strand, within QEN71_RS41285at 331.556 kb on - strand, within QEN71_RS41285at 331.556 kb on - strand, within QEN71_RS41285at 331.556 kb on - strand, within QEN71_RS41285at 331.602 kb on + strand, within QEN71_RS41285at 331.602 kb on + strand, within QEN71_RS41285at 331.603 kb on - strand, within QEN71_RS41285at 331.815 kb on + strand, within QEN71_RS41285at 331.816 kb on - strand, within QEN71_RS41285at 331.816 kb on - strand, within QEN71_RS41285at 331.939 kb on + strand, within QEN71_RS41285at 332.179 kb on + strand, within QEN71_RS41285at 332.179 kb on + strand, within QEN71_RS41285at 332.180 kb on - strand, within QEN71_RS41285at 332.180 kb on - strand, within QEN71_RS41285at 332.399 kb on + strand, within QEN71_RS41285at 332.399 kb on + strand, within QEN71_RS41285at 332.466 kb on + strand, within QEN71_RS41285at 332.466 kb on + strand, within QEN71_RS41285at 332.624 kb on + strand, within QEN71_RS41285at 332.625 kb on - strand, within QEN71_RS41285at 332.625 kb on - strand, within QEN71_RS41285at 332.625 kb on - strand, within QEN71_RS41285at 332.660 kb on + strand, within QEN71_RS41285at 332.661 kb on - strand, within QEN71_RS41285at 332.835 kb on - strandat 332.835 kb on - strandat 332.919 kb on + strandat 332.919 kb on + strandat 332.919 kb on + strandat 332.920 kb on - strandat 333.046 kb on - strand, within QEN71_RS41290at 333.087 kb on + strand, within QEN71_RS41290at 333.087 kb on + strand, within QEN71_RS41290at 333.087 kb on + strand, within QEN71_RS41290at 333.087 kb on + strand, within QEN71_RS41290at 333.087 kb on + strand, within QEN71_RS41290at 333.088 kb on - strand, within QEN71_RS41290at 333.088 kb on - strand, within QEN71_RS41290at 333.088 kb on - strand, within QEN71_RS41290at 333.088 kb on - strand, within QEN71_RS41290at 333.095 kb on - strand, within QEN71_RS41290at 333.160 kb on - strand, within QEN71_RS41290at 333.557 kb on - strand, within QEN71_RS41290at 333.663 kb on + strand, within QEN71_RS41290at 333.663 kb on + strand, within QEN71_RS41290at 333.794 kb on - strandat 333.804 kb on + strandat 333.805 kb on - strandat 333.805 kb on - strandat 333.805 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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330,383 + +0.3
330,384 - -1.3
330,441 - QEN71_RS41280 0.16 -0.2
330,608 + QEN71_RS41280 0.33 +0.0
330,616 - QEN71_RS41280 0.34 -0.8
330,792 + QEN71_RS41280 0.53 -0.4
330,793 - QEN71_RS41280 0.53 +0.3
330,793 - QEN71_RS41280 0.53 -1.5
330,814 + QEN71_RS41280 0.55 -1.2
330,837 + QEN71_RS41280 0.58 -0.8
330,837 + QEN71_RS41280 0.58 -1.5
331,019 + QEN71_RS41280 0.77 -0.9
331,019 + QEN71_RS41280 0.77 +0.5
331,022 + QEN71_RS41280 0.77 -0.9
331,139 + QEN71_RS41280 0.90 -0.7
331,139 + QEN71_RS41280 0.90 +0.7
331,139 + QEN71_RS41280 0.90 -0.8
331,139 + QEN71_RS41280 0.90 -0.3
331,139 + QEN71_RS41280 0.90 +1.5
331,140 - QEN71_RS41280 0.90 -1.1
331,140 - QEN71_RS41280 0.90 +0.2
331,143 + +0.9
331,143 + +0.2
331,146 + +0.2
331,147 - +0.0
331,205 - -0.0
331,335 + +0.7
331,335 + +0.0
331,335 + -0.3
331,335 + +0.4
331,344 + -0.4
331,402 + -0.2
331,419 + -0.6
331,473 + +0.3
331,555 + QEN71_RS41285 0.12 +0.5
331,555 + QEN71_RS41285 0.12 +0.7
331,556 - QEN71_RS41285 0.12 -0.4
331,556 - QEN71_RS41285 0.12 -1.3
331,556 - QEN71_RS41285 0.12 +1.1
331,602 + QEN71_RS41285 0.15 +0.1
331,602 + QEN71_RS41285 0.15 +0.7
331,603 - QEN71_RS41285 0.15 -0.6
331,815 + QEN71_RS41285 0.29 +0.7
331,816 - QEN71_RS41285 0.29 -1.3
331,816 - QEN71_RS41285 0.29 -0.7
331,939 + QEN71_RS41285 0.37 +0.1
332,179 + QEN71_RS41285 0.53 +0.4
332,179 + QEN71_RS41285 0.53 -0.3
332,180 - QEN71_RS41285 0.53 -2.1
332,180 - QEN71_RS41285 0.53 +0.2
332,399 + QEN71_RS41285 0.68 -1.7
332,399 + QEN71_RS41285 0.68 -2.0
332,466 + QEN71_RS41285 0.72 -0.4
332,466 + QEN71_RS41285 0.72 -0.4
332,624 + QEN71_RS41285 0.83 -0.5
332,625 - QEN71_RS41285 0.83 -0.1
332,625 - QEN71_RS41285 0.83 +0.3
332,625 - QEN71_RS41285 0.83 +0.1
332,660 + QEN71_RS41285 0.85 +0.1
332,661 - QEN71_RS41285 0.85 +0.4
332,835 - -0.7
332,835 - -0.1
332,919 + -0.2
332,919 + -0.5
332,919 + -0.2
332,920 - +0.7
333,046 - QEN71_RS41290 0.15 -0.5
333,087 + QEN71_RS41290 0.20 +1.2
333,087 + QEN71_RS41290 0.20 +0.6
333,087 + QEN71_RS41290 0.20 +1.8
333,087 + QEN71_RS41290 0.20 +0.1
333,087 + QEN71_RS41290 0.20 -0.1
333,088 - QEN71_RS41290 0.20 -0.1
333,088 - QEN71_RS41290 0.20 +0.5
333,088 - QEN71_RS41290 0.20 +0.2
333,088 - QEN71_RS41290 0.20 +0.0
333,095 - QEN71_RS41290 0.20 -1.0
333,160 - QEN71_RS41290 0.28 -0.5
333,557 - QEN71_RS41290 0.71 -0.5
333,663 + QEN71_RS41290 0.83 -0.5
333,663 + QEN71_RS41290 0.83 +0.1
333,794 - +0.9
333,804 + +0.6
333,805 - +0.2
333,805 - -0.1
333,805 - -0.2

Or see this region's nucleotide sequence