Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS32775 and QEN71_RS32780 are separated by 33 nucleotides QEN71_RS32780 and QEN71_RS32785 are separated by 626 nucleotides
QEN71_RS32775: QEN71_RS32775 - class 1 fructose-bisphosphatase, at 684,850 to 685,950
_RS32775
QEN71_RS32780: QEN71_RS32780 - phosphoribulokinase, at 685,984 to 686,856
_RS32780
QEN71_RS32785: QEN71_RS32785 - DUF6513 domain-containing protein, at 687,483 to 688,862
_RS32785
Position (kb) 685
686
687 Strain fitness (log2 ratio) -1
0
1 at 685.126 kb on + strand, within QEN71_RS32775 at 685.262 kb on - strand, within QEN71_RS32775 at 685.346 kb on - strand, within QEN71_RS32775 at 685.354 kb on + strand, within QEN71_RS32775 at 685.355 kb on - strand, within QEN71_RS32775 at 685.355 kb on - strand, within QEN71_RS32775 at 685.821 kb on - strand, within QEN71_RS32775 at 685.849 kb on - strand at 686.242 kb on + strand, within QEN71_RS32780 at 686.372 kb on - strand, within QEN71_RS32780 at 686.456 kb on + strand, within QEN71_RS32780 at 686.457 kb on - strand, within QEN71_RS32780 at 686.623 kb on - strand, within QEN71_RS32780 at 686.676 kb on - strand, within QEN71_RS32780 at 686.724 kb on + strand, within QEN71_RS32780 at 686.763 kb on + strand, within QEN71_RS32780 at 686.764 kb on - strand, within QEN71_RS32780 at 686.796 kb on + strand at 686.817 kb on + strand at 686.909 kb on - strand at 687.042 kb on - strand at 687.497 kb on + strand at 687.497 kb on + strand at 687.634 kb on + strand, within QEN71_RS32785 at 687.634 kb on + strand, within QEN71_RS32785 at 687.635 kb on - strand, within QEN71_RS32785 at 687.676 kb on + strand, within QEN71_RS32785
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 685,126 + QEN71_RS32775 0.25 -0.1 685,262 - QEN71_RS32775 0.37 +0.7 685,346 - QEN71_RS32775 0.45 -0.7 685,354 + QEN71_RS32775 0.46 +0.3 685,355 - QEN71_RS32775 0.46 +0.4 685,355 - QEN71_RS32775 0.46 -1.1 685,821 - QEN71_RS32775 0.88 +1.5 685,849 - +0.8 686,242 + QEN71_RS32780 0.30 +0.4 686,372 - QEN71_RS32780 0.44 -0.1 686,456 + QEN71_RS32780 0.54 +0.5 686,457 - QEN71_RS32780 0.54 -0.6 686,623 - QEN71_RS32780 0.73 -0.5 686,676 - QEN71_RS32780 0.79 -0.7 686,724 + QEN71_RS32780 0.85 +0.4 686,763 + QEN71_RS32780 0.89 +0.5 686,764 - QEN71_RS32780 0.89 +0.4 686,796 + -0.6 686,817 + -0.6 686,909 - +0.4 687,042 - -0.9 687,497 + +0.3 687,497 + +0.4 687,634 + QEN71_RS32785 0.11 +0.2 687,634 + QEN71_RS32785 0.11 +0.9 687,635 - QEN71_RS32785 0.11 -0.2 687,676 + QEN71_RS32785 0.14 +0.4
Or see this region's nucleotide sequence