Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS26870

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
5,992,076	+		QEN71_RS26860	0.71	-0.0
5,992,325	+				+0.3
5,992,326	-				+0.5
5,992,343	+				-0.4
5,992,344	-				-0.4
5,992,344	-				+0.5
5,992,455	+		QEN71_RS26865	0.25	-0.7
5,992,455	+		QEN71_RS26865	0.25	-1.8
5,992,455	+		QEN71_RS26865	0.25	+0.2
5,992,455	+		QEN71_RS26865	0.25	+0.2
5,992,455	+		QEN71_RS26865	0.25	+0.5
5,992,455	+		QEN71_RS26865	0.25	+0.8
5,992,455	+		QEN71_RS26865	0.25	+1.1
5,992,456	-		QEN71_RS26865	0.25	-0.0
5,992,456	-		QEN71_RS26865	0.25	-1.8
5,992,456	-		QEN71_RS26865	0.25	+1.6
5,992,524	-		QEN71_RS26865	0.40	-0.5
5,992,539	+		QEN71_RS26865	0.44	+1.2
5,992,558	+		QEN71_RS26865	0.48	-1.0
5,992,559	-		QEN71_RS26865	0.48	-1.2
5,992,559	-		QEN71_RS26865	0.48	-1.4
5,992,559	-		QEN71_RS26865	0.48	+0.3
5,992,662	+		QEN71_RS26865	0.71	-0.7
5,992,665	+		QEN71_RS26865	0.72	-0.7
5,992,666	-		QEN71_RS26865	0.72	-0.8
5,992,666	-		QEN71_RS26865	0.72	-0.0
5,992,666	-		QEN71_RS26865	0.72	+0.0
5,992,674	-		QEN71_RS26865	0.74	+0.9
5,992,674	-		QEN71_RS26865	0.74	-0.9
5,992,867	+				+0.6
5,992,867	+				+0.5
5,992,867	+				+1.5
5,992,867	+				-0.0
5,992,881	+				-1.3
5,992,923	-				+0.3
5,992,956	+				+0.3
5,992,956	+				-0.3
5,992,956	+				-0.1
5,992,956	+				+0.1
5,992,956	+				-0.5
5,992,957	-				-0.7
5,992,957	-				-0.5
5,992,957	-				+0.1
5,992,957	-				-0.2
5,992,957	-				+0.1
5,993,041	+				-0.3
5,993,041	+				-0.4
5,993,042	-				-0.3
5,993,042	-				+1.4
5,993,042	-				-0.8
5,993,295	+		QEN71_RS26870	0.34	+1.8
5,993,296	-		QEN71_RS26870	0.34	-0.3
5,993,296	-		QEN71_RS26870	0.34	+0.4
5,993,296	-		QEN71_RS26870	0.34	+0.3
5,993,296	-		QEN71_RS26870	0.34	-0.4
5,993,374	+		QEN71_RS26870	0.45	-0.6
5,993,741	-				-0.6
5,993,762	+				-0.6
5,993,762	+				-0.1
5,993,762	+				-0.8
5,993,763	-				-0.0
5,993,763	-				-0.3
5,993,763	-				-1.3
5,993,832	+				-0.4
5,993,832	+				-2.5
5,993,833	-				-0.5
5,993,833	-				-0.3
5,993,833	-				-1.4
5,993,833	-				-1.4
5,993,852	+		QEN71_RS26875	0.12	+0.2
5,993,852	+		QEN71_RS26875	0.12	-0.1
5,993,853	-		QEN71_RS26875	0.13	+0.7
5,993,869	+		QEN71_RS26875	0.15	+0.9
5,993,869	+		QEN71_RS26875	0.15	-1.0
5,993,870	-		QEN71_RS26875	0.15	+0.6
5,993,887	+		QEN71_RS26875	0.18	+0.1
5,993,888	-		QEN71_RS26875	0.18	+0.5
5,993,888	-		QEN71_RS26875	0.18	-0.4
5,993,888	-		QEN71_RS26875	0.18	-0.2
5,993,928	+		QEN71_RS26875	0.24	-0.0
5,993,929	-		QEN71_RS26875	0.24	-1.0
5,993,929	-		QEN71_RS26875	0.24	-1.0
5,993,929	-		QEN71_RS26875	0.24	-0.2
5,993,941	+		QEN71_RS26875	0.26	-0.1
5,994,033	+		QEN71_RS26875	0.39	-0.2
5,994,033	+		QEN71_RS26875	0.39	-0.2
5,994,033	+		QEN71_RS26875	0.39	+0.5
5,994,034	-		QEN71_RS26875	0.39	+0.3
5,994,111	+		QEN71_RS26875	0.51	-1.5
5,994,111	+		QEN71_RS26875	0.51	-0.2
5,994,111	+		QEN71_RS26875	0.51	-0.4
5,994,112	-		QEN71_RS26875	0.51	-0.1
5,994,112	-		QEN71_RS26875	0.51	-1.0
5,994,112	-		QEN71_RS26875	0.51	+2.8
5,994,114	+		QEN71_RS26875	0.51	-0.0
5,994,114	+		QEN71_RS26875	0.51	-0.3
5,994,114	+		QEN71_RS26875	0.51	-0.0
5,994,114	+		QEN71_RS26875	0.51	-1.0
5,994,115	-		QEN71_RS26875	0.51	+0.2
5,994,115	-		QEN71_RS26875	0.51	-0.8
5,994,270	+		QEN71_RS26875	0.74	-0.6
5,994,270	+		QEN71_RS26875	0.74	-0.3
5,994,270	+		QEN71_RS26875	0.74	-2.5
5,994,270	+		QEN71_RS26875	0.74	+0.0
5,994,270	+		QEN71_RS26875	0.74	-1.0
5,994,270	+		QEN71_RS26875	0.74	+0.8
5,994,270	+		QEN71_RS26875	0.74	+1.0
5,994,270	+		QEN71_RS26875	0.74	-0.6
5,994,271	-		QEN71_RS26875	0.74	-0.2
5,994,271	-		QEN71_RS26875	0.74	-0.4
5,994,271	-		QEN71_RS26875	0.74	-1.2
5,994,271	-		QEN71_RS26875	0.74	+0.2
5,994,271	-		QEN71_RS26875	0.74	-0.1
5,994,461	+				-0.6
5,994,461	+				+0.2
5,994,461	+				-1.8
5,994,461	+				+0.5
5,994,461	+				-0.6
5,994,461	+				+2.0
5,994,461	+				-0.4
5,994,461	+				-2.0
5,994,461	+				-0.4
5,994,462	-				+0.0
5,994,462	-				-2.0
5,994,462	-				-0.6
5,994,530	+		QEN71_RS26880	0.11	+0.8
5,994,530	+		QEN71_RS26880	0.11	-0.5
5,994,530	+		QEN71_RS26880	0.11	-0.7
5,994,531	-		QEN71_RS26880	0.12	+0.1
5,994,531	-		QEN71_RS26880	0.12	+0.4
5,994,531	-		QEN71_RS26880	0.12	+0.0
5,994,560	+		QEN71_RS26880	0.16	-0.1
5,994,560	+		QEN71_RS26880	0.16	-1.5
5,994,560	+		QEN71_RS26880	0.16	-0.0
5,994,560	+		QEN71_RS26880	0.16	-0.5
5,994,560	+		QEN71_RS26880	0.16	+0.9
5,994,560	+		QEN71_RS26880	0.16	-0.1
5,994,560	+		QEN71_RS26880	0.16	+0.5
5,994,561	-		QEN71_RS26880	0.16	+1.5
5,994,561	-		QEN71_RS26880	0.16	-0.2
5,994,561	-		QEN71_RS26880	0.16	+0.4
5,994,561	-		QEN71_RS26880	0.16	+2.0
5,994,561	-		QEN71_RS26880	0.16	-0.0
5,994,561	-		QEN71_RS26880	0.16	+0.7
5,994,561	-		QEN71_RS26880	0.16	+0.9
5,994,561	-		QEN71_RS26880	0.16	+0.0
5,994,561	-		QEN71_RS26880	0.16	-0.7
5,994,561	-		QEN71_RS26880	0.16	-0.3
5,994,575	+		QEN71_RS26880	0.18	-1.0
5,994,576	-		QEN71_RS26880	0.18	+0.4
5,994,576	-		QEN71_RS26880	0.18	-0.4
5,994,576	-		QEN71_RS26880	0.18	-0.1
5,994,713	+		QEN71_RS26880	0.36	-1.2
5,994,713	+		QEN71_RS26880	0.36	-0.4
5,994,714	-		QEN71_RS26880	0.36	+0.0
5,994,714	-		QEN71_RS26880	0.36	-0.4
5,994,714	-		QEN71_RS26880	0.36	-0.5
5,994,719	+		QEN71_RS26880	0.37	+0.5
5,994,719	+		QEN71_RS26880	0.37	-0.5
5,994,719	+		QEN71_RS26880	0.37	-0.5
5,994,720	-		QEN71_RS26880	0.37	+0.3
5,994,720	-		QEN71_RS26880	0.37	-0.5
5,994,720	-		QEN71_RS26880	0.37	+0.5
5,994,720	-		QEN71_RS26880	0.37	-1.6
5,994,720	-		QEN71_RS26880	0.37	+0.6