Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS08780

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS08770 and QEN71_RS08775 overlap by 4 nucleotidesQEN71_RS08775 and QEN71_RS08780 are separated by 1 nucleotidesQEN71_RS08780 and QEN71_RS08785 are separated by 240 nucleotides QEN71_RS08770: QEN71_RS08770 - cobalt-precorrin-5B (C(1))-methyltransferase, at 1,971,004 to 1,972,104 _RS08770 QEN71_RS08775: QEN71_RS08775 - cobalt-precorrin-6A reductase, at 1,972,101 to 1,972,832 _RS08775 QEN71_RS08780: QEN71_RS08780 - precorrin-4 C(11)-methyltransferase, at 1,972,834 to 1,973,565 _RS08780 QEN71_RS08785: QEN71_RS08785 - sodium:solute symporter, at 1,973,806 to 1,975,284 _RS08785 Position (kb) 1972 1973 1974Strain fitness (log2 ratio) -2 -1 0 1at 1972.083 kb on + strandat 1972.083 kb on + strandat 1972.083 kb on + strandat 1972.083 kb on + strandat 1972.083 kb on + strandat 1972.083 kb on + strandat 1972.084 kb on - strandat 1972.084 kb on - strandat 1972.084 kb on - strandat 1972.084 kb on - strandat 1972.176 kb on + strand, within QEN71_RS08775at 1972.176 kb on + strand, within QEN71_RS08775at 1972.176 kb on + strand, within QEN71_RS08775at 1972.176 kb on + strand, within QEN71_RS08775at 1972.176 kb on + strand, within QEN71_RS08775at 1972.176 kb on + strand, within QEN71_RS08775at 1972.176 kb on + strand, within QEN71_RS08775at 1972.176 kb on + strand, within QEN71_RS08775at 1972.176 kb on + strand, within QEN71_RS08775at 1972.177 kb on - strand, within QEN71_RS08775at 1972.177 kb on - strand, within QEN71_RS08775at 1972.177 kb on - strand, within QEN71_RS08775at 1972.177 kb on - strand, within QEN71_RS08775at 1972.177 kb on - strand, within QEN71_RS08775at 1972.177 kb on - strand, within QEN71_RS08775at 1972.179 kb on - strand, within QEN71_RS08775at 1972.266 kb on + strand, within QEN71_RS08775at 1972.267 kb on - strand, within QEN71_RS08775at 1972.267 kb on - strand, within QEN71_RS08775at 1972.314 kb on + strand, within QEN71_RS08775at 1972.484 kb on + strand, within QEN71_RS08775at 1972.484 kb on + strand, within QEN71_RS08775at 1972.484 kb on + strand, within QEN71_RS08775at 1972.484 kb on + strand, within QEN71_RS08775at 1972.484 kb on + strand, within QEN71_RS08775at 1972.485 kb on - strand, within QEN71_RS08775at 1972.485 kb on - strand, within QEN71_RS08775at 1972.485 kb on - strand, within QEN71_RS08775at 1972.485 kb on - strand, within QEN71_RS08775at 1972.485 kb on - strand, within QEN71_RS08775at 1972.485 kb on - strand, within QEN71_RS08775at 1972.522 kb on + strand, within QEN71_RS08775at 1972.522 kb on + strand, within QEN71_RS08775at 1972.522 kb on + strand, within QEN71_RS08775at 1972.523 kb on - strand, within QEN71_RS08775at 1972.537 kb on - strand, within QEN71_RS08775at 1972.908 kb on + strand, within QEN71_RS08780at 1972.908 kb on + strand, within QEN71_RS08780at 1972.908 kb on + strand, within QEN71_RS08780at 1973.025 kb on - strand, within QEN71_RS08780at 1973.025 kb on - strand, within QEN71_RS08780at 1973.057 kb on + strand, within QEN71_RS08780at 1973.057 kb on + strand, within QEN71_RS08780at 1973.216 kb on + strand, within QEN71_RS08780at 1973.217 kb on - strand, within QEN71_RS08780at 1973.242 kb on + strand, within QEN71_RS08780at 1973.242 kb on + strand, within QEN71_RS08780at 1973.242 kb on + strand, within QEN71_RS08780at 1973.315 kb on + strand, within QEN71_RS08780at 1973.315 kb on + strand, within QEN71_RS08780at 1973.315 kb on + strand, within QEN71_RS08780at 1973.315 kb on + strand, within QEN71_RS08780at 1973.315 kb on + strand, within QEN71_RS08780at 1973.316 kb on - strand, within QEN71_RS08780at 1973.316 kb on - strand, within QEN71_RS08780at 1973.316 kb on - strand, within QEN71_RS08780at 1973.316 kb on - strand, within QEN71_RS08780at 1973.316 kb on - strand, within QEN71_RS08780at 1973.399 kb on - strand, within QEN71_RS08780at 1973.462 kb on + strand, within QEN71_RS08780at 1973.463 kb on - strand, within QEN71_RS08780at 1973.492 kb on + strandat 1973.493 kb on - strandat 1973.545 kb on + strandat 1973.545 kb on + strandat 1973.545 kb on + strandat 1973.546 kb on - strandat 1973.546 kb on - strandat 1973.592 kb on - strandat 1973.702 kb on + strandat 1973.814 kb on + strandat 1973.815 kb on - strandat 1973.862 kb on + strandat 1973.863 kb on - strandat 1973.979 kb on + strand, within QEN71_RS08785at 1974.057 kb on + strand, within QEN71_RS08785at 1974.057 kb on + strand, within QEN71_RS08785at 1974.057 kb on + strand, within QEN71_RS08785at 1974.093 kb on + strand, within QEN71_RS08785at 1974.093 kb on + strand, within QEN71_RS08785at 1974.093 kb on + strand, within QEN71_RS08785at 1974.093 kb on + strand, within QEN71_RS08785at 1974.094 kb on - strand, within QEN71_RS08785at 1974.094 kb on - strand, within QEN71_RS08785at 1974.094 kb on - strand, within QEN71_RS08785at 1974.094 kb on - strand, within QEN71_RS08785at 1974.094 kb on - strand, within QEN71_RS08785at 1974.095 kb on + strand, within QEN71_RS08785at 1974.210 kb on + strand, within QEN71_RS08785at 1974.211 kb on - strand, within QEN71_RS08785at 1974.211 kb on - strand, within QEN71_RS08785at 1974.211 kb on - strand, within QEN71_RS08785at 1974.211 kb on - strand, within QEN71_RS08785at 1974.293 kb on - strand, within QEN71_RS08785at 1974.293 kb on - strand, within QEN71_RS08785at 1974.293 kb on - strand, within QEN71_RS08785at 1974.293 kb on - strand, within QEN71_RS08785at 1974.403 kb on + strand, within QEN71_RS08785at 1974.403 kb on + strand, within QEN71_RS08785at 1974.458 kb on + strand, within QEN71_RS08785at 1974.459 kb on - strand, within QEN71_RS08785at 1974.528 kb on + strand, within QEN71_RS08785at 1974.529 kb on - strand, within QEN71_RS08785at 1974.529 kb on - strand, within QEN71_RS08785

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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1,972,083 + -1.5
1,972,083 + -1.1
1,972,083 + +1.0
1,972,083 + +0.6
1,972,083 + -0.7
1,972,083 + -0.8
1,972,084 - -0.2
1,972,084 - +0.1
1,972,084 - -0.0
1,972,084 - +0.3
1,972,176 + QEN71_RS08775 0.10 +0.3
1,972,176 + QEN71_RS08775 0.10 -0.1
1,972,176 + QEN71_RS08775 0.10 +0.4
1,972,176 + QEN71_RS08775 0.10 -0.0
1,972,176 + QEN71_RS08775 0.10 +0.3
1,972,176 + QEN71_RS08775 0.10 -0.2
1,972,176 + QEN71_RS08775 0.10 +0.4
1,972,176 + QEN71_RS08775 0.10 +0.4
1,972,176 + QEN71_RS08775 0.10 +0.1
1,972,177 - QEN71_RS08775 0.10 -0.6
1,972,177 - QEN71_RS08775 0.10 -0.7
1,972,177 - QEN71_RS08775 0.10 -0.1
1,972,177 - QEN71_RS08775 0.10 +0.2
1,972,177 - QEN71_RS08775 0.10 -1.1
1,972,177 - QEN71_RS08775 0.10 -0.1
1,972,179 - QEN71_RS08775 0.11 +0.8
1,972,266 + QEN71_RS08775 0.23 +0.5
1,972,267 - QEN71_RS08775 0.23 -0.2
1,972,267 - QEN71_RS08775 0.23 +1.0
1,972,314 + QEN71_RS08775 0.29 -0.1
1,972,484 + QEN71_RS08775 0.52 -0.3
1,972,484 + QEN71_RS08775 0.52 -0.7
1,972,484 + QEN71_RS08775 0.52 -0.5
1,972,484 + QEN71_RS08775 0.52 +1.2
1,972,484 + QEN71_RS08775 0.52 -0.8
1,972,485 - QEN71_RS08775 0.52 -1.9
1,972,485 - QEN71_RS08775 0.52 +1.1
1,972,485 - QEN71_RS08775 0.52 +0.4
1,972,485 - QEN71_RS08775 0.52 +1.1
1,972,485 - QEN71_RS08775 0.52 +0.8
1,972,485 - QEN71_RS08775 0.52 -1.8
1,972,522 + QEN71_RS08775 0.58 +0.3
1,972,522 + QEN71_RS08775 0.58 +0.1
1,972,522 + QEN71_RS08775 0.58 +1.0
1,972,523 - QEN71_RS08775 0.58 -0.2
1,972,537 - QEN71_RS08775 0.60 +1.5
1,972,908 + QEN71_RS08780 0.10 +0.1
1,972,908 + QEN71_RS08780 0.10 -0.8
1,972,908 + QEN71_RS08780 0.10 +0.0
1,973,025 - QEN71_RS08780 0.26 -0.1
1,973,025 - QEN71_RS08780 0.26 -0.8
1,973,057 + QEN71_RS08780 0.30 -1.8
1,973,057 + QEN71_RS08780 0.30 +1.6
1,973,216 + QEN71_RS08780 0.52 -0.6
1,973,217 - QEN71_RS08780 0.52 +0.4
1,973,242 + QEN71_RS08780 0.56 -0.8
1,973,242 + QEN71_RS08780 0.56 -0.0
1,973,242 + QEN71_RS08780 0.56 -0.1
1,973,315 + QEN71_RS08780 0.66 -0.0
1,973,315 + QEN71_RS08780 0.66 +0.2
1,973,315 + QEN71_RS08780 0.66 +1.2
1,973,315 + QEN71_RS08780 0.66 +0.5
1,973,315 + QEN71_RS08780 0.66 +0.1
1,973,316 - QEN71_RS08780 0.66 -0.3
1,973,316 - QEN71_RS08780 0.66 +0.7
1,973,316 - QEN71_RS08780 0.66 +0.3
1,973,316 - QEN71_RS08780 0.66 +0.2
1,973,316 - QEN71_RS08780 0.66 -0.3
1,973,399 - QEN71_RS08780 0.77 -0.1
1,973,462 + QEN71_RS08780 0.86 -0.1
1,973,463 - QEN71_RS08780 0.86 -0.5
1,973,492 + +0.9
1,973,493 - +0.7
1,973,545 + -0.3
1,973,545 + +0.2
1,973,545 + +0.6
1,973,546 - +0.3
1,973,546 - +0.6
1,973,592 - -0.4
1,973,702 + +0.5
1,973,814 + -1.5
1,973,815 - +0.2
1,973,862 + +0.5
1,973,863 - +0.3
1,973,979 + QEN71_RS08785 0.12 -1.0
1,974,057 + QEN71_RS08785 0.17 +1.1
1,974,057 + QEN71_RS08785 0.17 +0.1
1,974,057 + QEN71_RS08785 0.17 +0.2
1,974,093 + QEN71_RS08785 0.19 -0.1
1,974,093 + QEN71_RS08785 0.19 -0.8
1,974,093 + QEN71_RS08785 0.19 -1.6
1,974,093 + QEN71_RS08785 0.19 +0.9
1,974,094 - QEN71_RS08785 0.19 -0.6
1,974,094 - QEN71_RS08785 0.19 -1.3
1,974,094 - QEN71_RS08785 0.19 +0.3
1,974,094 - QEN71_RS08785 0.19 -1.3
1,974,094 - QEN71_RS08785 0.19 +1.1
1,974,095 + QEN71_RS08785 0.20 +0.2
1,974,210 + QEN71_RS08785 0.27 +0.0
1,974,211 - QEN71_RS08785 0.27 -0.3
1,974,211 - QEN71_RS08785 0.27 +0.3
1,974,211 - QEN71_RS08785 0.27 -0.1
1,974,211 - QEN71_RS08785 0.27 -0.8
1,974,293 - QEN71_RS08785 0.33 +0.5
1,974,293 - QEN71_RS08785 0.33 -0.2
1,974,293 - QEN71_RS08785 0.33 -0.1
1,974,293 - QEN71_RS08785 0.33 -0.0
1,974,403 + QEN71_RS08785 0.40 +1.0
1,974,403 + QEN71_RS08785 0.40 +0.3
1,974,458 + QEN71_RS08785 0.44 +1.2
1,974,459 - QEN71_RS08785 0.44 +0.6
1,974,528 + QEN71_RS08785 0.49 +0.1
1,974,529 - QEN71_RS08785 0.49 -0.0
1,974,529 - QEN71_RS08785 0.49 +0.2

Or see this region's nucleotide sequence