Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS05465

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
1,207,064	+		QEN71_RS05460	0.25	+0.3
1,207,064	+		QEN71_RS05460	0.25	-0.5
1,207,064	+		QEN71_RS05460	0.25	-0.0
1,207,064	+		QEN71_RS05460	0.25	-1.2
1,207,064	+		QEN71_RS05460	0.25	+0.9
1,207,064	+		QEN71_RS05460	0.25	-0.0
1,207,064	+		QEN71_RS05460	0.25	+0.7
1,207,064	+		QEN71_RS05460	0.25	+1.5
1,207,064	+		QEN71_RS05460	0.25	+0.2
1,207,065	-		QEN71_RS05460	0.25	-0.7
1,207,065	-		QEN71_RS05460	0.25	+0.2
1,207,065	-		QEN71_RS05460	0.25	+1.0
1,207,065	-		QEN71_RS05460	0.25	-1.0
1,207,065	-		QEN71_RS05460	0.25	-0.5
1,207,065	-		QEN71_RS05460	0.25	-0.8
1,207,065	-		QEN71_RS05460	0.25	+0.5
1,207,065	-		QEN71_RS05460	0.25	+0.9
1,207,236	+		QEN71_RS05460	0.43	+0.4
1,207,236	+		QEN71_RS05460	0.43	-0.4
1,207,237	-		QEN71_RS05460	0.43	-0.2
1,207,237	-		QEN71_RS05460	0.43	+0.6
1,207,238	+		QEN71_RS05460	0.43	-1.8
1,207,238	+		QEN71_RS05460	0.43	+0.6
1,207,238	+		QEN71_RS05460	0.43	+0.1
1,207,239	-		QEN71_RS05460	0.43	-0.9
1,207,239	-		QEN71_RS05460	0.43	+0.6
1,207,256	+		QEN71_RS05460	0.45	-0.5
1,207,256	+		QEN71_RS05460	0.45	+1.9
1,207,257	-		QEN71_RS05460	0.45	+0.9
1,207,476	+		QEN71_RS05460	0.69	+0.3
1,207,477	-		QEN71_RS05460	0.69	-1.2
1,207,803	+				-2.0
1,207,803	+				-0.0
1,207,804	-				+0.2
1,207,804	-				+0.3
1,207,804	-				-1.1
1,207,804	-				-0.4
1,207,804	-				-1.2
1,207,813	-				-0.1
1,207,813	-				+1.8
1,207,813	-				+0.0
1,207,825	-				+0.3
1,207,890	+				-0.6
1,207,891	-				+0.2
1,207,909	-				+0.9
1,208,019	-				-0.4
1,208,071	+				+0.0
1,208,071	+				+0.3
1,208,071	+				-1.0
1,208,072	-				-0.7
1,208,072	-				-0.2
1,208,246	+		QEN71_RS05465	0.17	+0.4
1,208,246	+		QEN71_RS05465	0.17	-0.5
1,208,246	+		QEN71_RS05465	0.17	-0.1
1,208,246	+		QEN71_RS05465	0.17	-0.5
1,208,246	+		QEN71_RS05465	0.17	-1.1
1,208,246	+		QEN71_RS05465	0.17	-0.0
1,208,246	+		QEN71_RS05465	0.17	-1.9
1,208,246	+		QEN71_RS05465	0.17	+0.2
1,208,247	-		QEN71_RS05465	0.17	+0.6
1,208,247	-		QEN71_RS05465	0.17	+0.4
1,208,247	-		QEN71_RS05465	0.17	+1.8
1,208,247	-		QEN71_RS05465	0.17	-0.2
1,208,247	-		QEN71_RS05465	0.17	-0.4
1,208,247	-		QEN71_RS05465	0.17	-0.6
1,208,247	-		QEN71_RS05465	0.17	+0.6
1,208,341	+		QEN71_RS05465	0.23	-0.4
1,208,341	+		QEN71_RS05465	0.23	+1.8
1,208,342	-		QEN71_RS05465	0.23	-0.6
1,208,342	-		QEN71_RS05465	0.23	-0.0
1,208,342	-		QEN71_RS05465	0.23	-0.2
1,208,342	-		QEN71_RS05465	0.23	-0.5
1,208,356	+		QEN71_RS05465	0.24	+0.4
1,208,356	+		QEN71_RS05465	0.24	-0.6
1,208,357	-		QEN71_RS05465	0.24	+0.3
1,208,357	-		QEN71_RS05465	0.24	+0.2
1,208,368	+		QEN71_RS05465	0.25	-0.5
1,208,368	+		QEN71_RS05465	0.25	-0.2
1,208,369	-		QEN71_RS05465	0.25	-0.4
1,208,426	+		QEN71_RS05465	0.29	-0.3
1,208,426	+		QEN71_RS05465	0.29	+1.0
1,208,427	-		QEN71_RS05465	0.29	+1.1
1,208,545	+		QEN71_RS05465	0.36	+0.5
1,208,546	-		QEN71_RS05465	0.36	+0.7
1,208,557	+		QEN71_RS05465	0.37	+1.6
1,208,557	+		QEN71_RS05465	0.37	+0.6
1,208,558	-		QEN71_RS05465	0.37	+0.5
1,208,558	-		QEN71_RS05465	0.37	+1.2
1,208,569	+		QEN71_RS05465	0.38	-0.2
1,208,569	+		QEN71_RS05465	0.38	+0.1
1,208,569	+		QEN71_RS05465	0.38	-0.4
1,208,570	-		QEN71_RS05465	0.38	+0.6
1,208,570	-		QEN71_RS05465	0.38	-0.3
1,208,570	-		QEN71_RS05465	0.38	+0.5
1,208,604	+		QEN71_RS05465	0.40	+0.2
1,208,604	+		QEN71_RS05465	0.40	+0.5
1,208,604	+		QEN71_RS05465	0.40	-0.7
1,208,604	+		QEN71_RS05465	0.40	+0.1
1,208,604	+		QEN71_RS05465	0.40	-1.6
1,208,604	+		QEN71_RS05465	0.40	-0.4
1,208,604	+		QEN71_RS05465	0.40	+1.0
1,208,605	-		QEN71_RS05465	0.40	-0.0
1,208,605	-		QEN71_RS05465	0.40	-0.0
1,208,605	-		QEN71_RS05465	0.40	-0.2
1,208,605	-		QEN71_RS05465	0.40	-1.1
1,208,693	+		QEN71_RS05465	0.45	-0.5
1,208,694	-		QEN71_RS05465	0.45	+0.5
1,208,827	+		QEN71_RS05465	0.54	+1.2
1,208,827	+		QEN71_RS05465	0.54	-0.1
1,208,827	+		QEN71_RS05465	0.54	-1.9
1,208,827	+		QEN71_RS05465	0.54	+0.3
1,208,827	+		QEN71_RS05465	0.54	-0.1
1,208,827	+		QEN71_RS05465	0.54	+1.6
1,208,828	-		QEN71_RS05465	0.54	-1.0
1,208,828	-		QEN71_RS05465	0.54	-1.0
1,208,828	-		QEN71_RS05465	0.54	+0.4
1,208,926	+		QEN71_RS05465	0.60	+0.8
1,208,927	-		QEN71_RS05465	0.60	-0.6
1,208,941	+		QEN71_RS05465	0.61	-0.7
1,208,941	+		QEN71_RS05465	0.61	+0.3
1,208,942	-		QEN71_RS05465	0.61	+0.7
1,208,942	-		QEN71_RS05465	0.61	-0.4
1,209,284	-		QEN71_RS05465	0.82	+0.7
1,209,284	-		QEN71_RS05465	0.82	-0.3
1,209,284	-		QEN71_RS05465	0.82	+0.2
1,209,284	-		QEN71_RS05465	0.82	-0.4
1,209,298	+		QEN71_RS05465	0.83	-0.4
1,209,298	+		QEN71_RS05465	0.83	-0.3
1,209,298	+		QEN71_RS05465	0.83	-1.2
1,209,299	-		QEN71_RS05465	0.83	+0.4
1,209,299	-		QEN71_RS05465	0.83	+1.3
1,209,299	-		QEN71_RS05465	0.83	-0.0
1,209,552	+				-0.5
1,209,552	+				+0.8
1,209,552	+				-1.4
1,209,553	-				-1.0
1,209,553	-				-0.8
1,209,553	-				-0.6
1,209,553	-				+0.6
1,209,553	-				+1.1
1,209,553	-				-0.4
1,209,553	-				-0.7
1,209,611	+				-0.5
1,209,689	-				+0.6
1,209,689	-				-0.1
1,209,696	+				+0.3
1,209,696	+				+0.5
1,209,696	+				+0.3
1,209,696	+				-0.2
1,209,697	-				-0.2
1,209,697	-				+0.8
1,209,704	+				+0.6
1,209,704	+				-0.5
1,209,704	+				+0.0
1,209,704	+				-0.1
1,209,704	+				+0.0
1,209,704	+				-0.7
1,209,705	-				-0.3
1,209,705	-				+0.3
1,209,705	-				-0.7
1,209,705	-				+0.1
1,209,705	-				-0.9
1,209,705	-				+0.2
1,209,727	+				+2.5
1,209,727	+				+0.1
1,209,728	-				-1.2
1,209,728	-				+0.4
1,209,728	-				-0.4
1,209,728	-				-0.2
1,209,728	-				+0.6
1,209,782	+				+0.2
1,209,783	-				+1.0
1,209,856	+				-0.2
1,209,950	+		QEN71_RS05470	0.15	+0.9
1,209,950	+		QEN71_RS05470	0.15	-0.7
1,209,953	+		QEN71_RS05470	0.15	-0.0
1,209,954	-		QEN71_RS05470	0.16	-0.2
1,209,968	+		QEN71_RS05470	0.18	+2.2
1,209,968	+		QEN71_RS05470	0.18	-1.4
1,209,968	+		QEN71_RS05470	0.18	-0.4
1,209,971	+		QEN71_RS05470	0.19	-1.0
1,209,971	+		QEN71_RS05470	0.19	-0.5
1,209,972	-		QEN71_RS05470	0.19	+0.5
1,209,992	+		QEN71_RS05470	0.22	-1.5
1,210,019	+		QEN71_RS05470	0.27	-0.0
1,210,019	+		QEN71_RS05470	0.27	-0.1
1,210,022	+		QEN71_RS05470	0.27	-0.7
1,210,023	-		QEN71_RS05470	0.27	+0.9
1,210,028	+		QEN71_RS05470	0.28	+0.7
1,210,029	-		QEN71_RS05470	0.28	+0.7
1,210,103	+		QEN71_RS05470	0.41	-0.6
1,210,104	-		QEN71_RS05470	0.41	-0.4
1,210,104	-		QEN71_RS05470	0.41	-0.5
1,210,104	-		QEN71_RS05470	0.41	-0.4
1,210,106	+		QEN71_RS05470	0.41	+1.0
1,210,107	-		QEN71_RS05470	0.42	-0.8
1,210,107	-		QEN71_RS05470	0.42	+0.7
1,210,107	-		QEN71_RS05470	0.42	+0.2
1,210,107	-		QEN71_RS05470	0.42	-0.4
1,210,118	+		QEN71_RS05470	0.44	-0.3
1,210,118	+		QEN71_RS05470	0.44	+1.1
1,210,118	+		QEN71_RS05470	0.44	-0.3
1,210,118	+		QEN71_RS05470	0.44	-0.7
1,210,119	-		QEN71_RS05470	0.44	+0.2
1,210,119	-		QEN71_RS05470	0.44	+0.4
1,210,124	+		QEN71_RS05470	0.45	-0.7
1,210,124	+		QEN71_RS05470	0.45	-0.1
1,210,145	+		QEN71_RS05470	0.48	+0.6
1,210,145	+		QEN71_RS05470	0.48	+0.2
1,210,146	-		QEN71_RS05470	0.48	+0.1
1,210,146	-		QEN71_RS05470	0.48	+0.2
1,210,148	+		QEN71_RS05470	0.49	-0.1
1,210,148	+		QEN71_RS05470	0.49	-2.0
1,210,148	+		QEN71_RS05470	0.49	+0.3
1,210,149	-		QEN71_RS05470	0.49	+0.0
1,210,149	-		QEN71_RS05470	0.49	-1.7
1,210,163	+		QEN71_RS05470	0.51	+0.3
1,210,163	+		QEN71_RS05470	0.51	-0.1
1,210,164	-		QEN71_RS05470	0.51	-1.1
1,210,164	-		QEN71_RS05470	0.51	+0.1
1,210,239	-		QEN71_RS05470	0.64	+0.1
1,210,239	-		QEN71_RS05470	0.64	-0.0
1,210,320	-		QEN71_RS05470	0.78	+0.3
1,210,331	+		QEN71_RS05470	0.80	+0.6
1,210,332	-		QEN71_RS05470	0.80	+0.2
1,210,332	-		QEN71_RS05470	0.80	-0.1
1,210,332	-		QEN71_RS05470	0.80	+1.4
1,210,346	+		QEN71_RS05470	0.82	+0.1
1,210,346	+		QEN71_RS05470	0.82	-0.3
1,210,347	-		QEN71_RS05470	0.82	-0.5
1,210,347	-		QEN71_RS05470	0.82	+0.0
1,210,347	-		QEN71_RS05470	0.82	-0.6
1,210,349	+		QEN71_RS05470	0.83	-0.7
1,210,349	+		QEN71_RS05470	0.83	+0.6
1,210,349	+		QEN71_RS05470	0.83	-0.1
1,210,349	+		QEN71_RS05470	0.83	-0.2
1,210,356	-		QEN71_RS05470	0.84	+0.5
1,210,365	-		QEN71_RS05470	0.86	+0.4
1,210,365	-		QEN71_RS05470	0.86	+0.3
1,210,365	-		QEN71_RS05470	0.86	+0.3
1,210,365	-		QEN71_RS05470	0.86	+0.0
1,210,367	+		QEN71_RS05470	0.86	-0.1
1,210,367	+		QEN71_RS05470	0.86	-0.9
1,210,367	+		QEN71_RS05470	0.86	+0.5
1,210,367	+		QEN71_RS05470	0.86	-0.9
1,210,367	+		QEN71_RS05470	0.86	+1.0
1,210,367	+		QEN71_RS05470	0.86	+0.2
1,210,367	+		QEN71_RS05470	0.86	-0.7
1,210,368	-		QEN71_RS05470	0.86	-0.7
1,210,368	-		QEN71_RS05470	0.86	+0.8
1,210,368	-		QEN71_RS05470	0.86	-0.1
1,210,368	-		QEN71_RS05470	0.86	+0.1
1,210,370	+		QEN71_RS05470	0.86	-1.0
1,210,370	+		QEN71_RS05470	0.86	+0.1
1,210,371	-		QEN71_RS05470	0.87	+0.0
1,210,371	-		QEN71_RS05470	0.87	-0.1
1,210,371	-		QEN71_RS05470	0.87	+1.9
1,210,371	-		QEN71_RS05470	0.87	-0.6
1,210,371	-		QEN71_RS05470	0.87	+0.2
1,210,372	-		QEN71_RS05470	0.87	-0.7
1,210,496	+				+0.4
1,210,496	+				-0.6
1,210,496	+				+0.2
1,210,496	+				-1.2
1,210,497	-				+0.3
1,210,497	-				-0.2
1,210,497	-				+0.6
1,210,497	-				+0.9
1,210,497	-				-0.5
1,210,497	-				-0.2
1,210,501	+				-0.3
1,210,501	+				-0.2
1,210,501	+				-0.2
1,210,501	+				-0.6
1,210,501	+				+0.0
1,210,501	+				-1.0
1,210,501	+				+1.2
1,210,502	-				+0.0
1,210,502	-				-0.5
1,210,502	-				-0.5
1,210,502	-				-0.6
1,210,502	-				-1.8
1,210,502	-				-0.1
1,210,502	-				-0.2
1,210,510	+				+0.7
1,210,510	+				-1.2
1,210,510	+				-1.6
1,210,511	-				-0.5
1,210,511	-				-0.5
1,210,511	-				-0.4
1,210,511	-				+0.0
1,210,511	-				+0.2
1,210,537	+				-0.7
1,210,537	+				-2.4
1,210,537	+				+1.8
1,210,537	+				-1.4
1,210,538	-				-2.1
1,210,538	-				+0.0
1,210,538	-				+0.5
1,210,538	-				-0.5
1,210,538	-				-1.0
1,210,545	+				-0.5
1,210,553	+				+0.4
1,210,554	-				-0.0
1,210,554	-				-0.1