Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS29150

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS29145 and QEN71_RS29150 are separated by 62 nucleotidesQEN71_RS29150 and QEN71_RS29155 are separated by 8 nucleotidesQEN71_RS29155 and QEN71_RS29160 are separated by 1 nucleotides QEN71_RS29145: QEN71_RS29145 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 6,463,278 to 6,464,354 _RS29145 QEN71_RS29150: QEN71_RS29150 - hypothetical protein, at 6,464,417 to 6,465,403 _RS29150 QEN71_RS29155: QEN71_RS29155 - WbqC family protein, at 6,465,412 to 6,466,131 _RS29155 QEN71_RS29160: QEN71_RS29160 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 6,466,133 to 6,467,314 _RS29160 Position (kb) 6464 6465 6466Strain fitness (log2 ratio) -2 -1 0 1 2at 6463.443 kb on - strand, within QEN71_RS29145at 6463.458 kb on - strand, within QEN71_RS29145at 6463.458 kb on - strand, within QEN71_RS29145at 6463.617 kb on + strand, within QEN71_RS29145at 6463.617 kb on + strand, within QEN71_RS29145at 6463.617 kb on + strand, within QEN71_RS29145at 6463.617 kb on + strand, within QEN71_RS29145at 6463.618 kb on - strand, within QEN71_RS29145at 6463.618 kb on - strand, within QEN71_RS29145at 6463.618 kb on - strand, within QEN71_RS29145at 6463.665 kb on + strand, within QEN71_RS29145at 6463.665 kb on + strand, within QEN71_RS29145at 6463.665 kb on + strand, within QEN71_RS29145at 6463.665 kb on + strand, within QEN71_RS29145at 6463.665 kb on + strand, within QEN71_RS29145at 6463.665 kb on + strand, within QEN71_RS29145at 6463.665 kb on + strand, within QEN71_RS29145at 6463.665 kb on + strand, within QEN71_RS29145at 6463.666 kb on - strand, within QEN71_RS29145at 6463.666 kb on - strand, within QEN71_RS29145at 6463.666 kb on - strand, within QEN71_RS29145at 6463.666 kb on - strand, within QEN71_RS29145at 6463.666 kb on - strand, within QEN71_RS29145at 6463.666 kb on - strand, within QEN71_RS29145at 6463.666 kb on - strand, within QEN71_RS29145at 6463.666 kb on - strand, within QEN71_RS29145at 6463.666 kb on - strand, within QEN71_RS29145at 6463.683 kb on + strand, within QEN71_RS29145at 6463.683 kb on + strand, within QEN71_RS29145at 6463.684 kb on - strand, within QEN71_RS29145at 6463.684 kb on - strand, within QEN71_RS29145at 6463.737 kb on + strand, within QEN71_RS29145at 6463.784 kb on + strand, within QEN71_RS29145at 6463.784 kb on + strand, within QEN71_RS29145at 6463.784 kb on + strand, within QEN71_RS29145at 6463.784 kb on + strand, within QEN71_RS29145at 6463.784 kb on + strand, within QEN71_RS29145at 6463.785 kb on - strand, within QEN71_RS29145at 6463.785 kb on - strand, within QEN71_RS29145at 6463.785 kb on - strand, within QEN71_RS29145at 6463.785 kb on - strand, within QEN71_RS29145at 6463.947 kb on + strand, within QEN71_RS29145at 6463.947 kb on + strand, within QEN71_RS29145at 6463.947 kb on + strand, within QEN71_RS29145at 6463.947 kb on + strand, within QEN71_RS29145at 6463.948 kb on - strand, within QEN71_RS29145at 6463.948 kb on - strand, within QEN71_RS29145at 6463.948 kb on - strand, within QEN71_RS29145at 6463.948 kb on - strand, within QEN71_RS29145at 6463.948 kb on - strand, within QEN71_RS29145at 6463.948 kb on - strand, within QEN71_RS29145at 6463.948 kb on - strand, within QEN71_RS29145at 6463.948 kb on - strand, within QEN71_RS29145at 6463.948 kb on - strand, within QEN71_RS29145at 6464.046 kb on + strand, within QEN71_RS29145at 6464.046 kb on + strand, within QEN71_RS29145at 6464.046 kb on + strand, within QEN71_RS29145at 6464.047 kb on - strand, within QEN71_RS29145at 6464.061 kb on + strand, within QEN71_RS29145at 6464.061 kb on + strand, within QEN71_RS29145at 6464.061 kb on + strand, within QEN71_RS29145at 6464.061 kb on + strand, within QEN71_RS29145at 6464.062 kb on - strand, within QEN71_RS29145at 6464.067 kb on + strand, within QEN71_RS29145at 6464.068 kb on - strand, within QEN71_RS29145at 6464.068 kb on - strand, within QEN71_RS29145at 6464.068 kb on - strand, within QEN71_RS29145at 6464.118 kb on + strand, within QEN71_RS29145at 6464.118 kb on + strand, within QEN71_RS29145at 6464.118 kb on + strand, within QEN71_RS29145at 6464.119 kb on - strand, within QEN71_RS29145at 6464.119 kb on - strand, within QEN71_RS29145at 6464.119 kb on - strand, within QEN71_RS29145at 6464.119 kb on - strand, within QEN71_RS29145at 6464.190 kb on + strand, within QEN71_RS29145at 6464.271 kb on + strandat 6464.272 kb on - strandat 6464.272 kb on - strandat 6464.384 kb on + strandat 6464.385 kb on - strandat 6464.570 kb on + strand, within QEN71_RS29150at 6464.570 kb on + strand, within QEN71_RS29150at 6464.570 kb on + strand, within QEN71_RS29150at 6464.571 kb on - strand, within QEN71_RS29150at 6464.571 kb on - strand, within QEN71_RS29150at 6464.693 kb on + strand, within QEN71_RS29150at 6464.694 kb on - strand, within QEN71_RS29150at 6464.702 kb on + strand, within QEN71_RS29150at 6464.702 kb on + strand, within QEN71_RS29150at 6464.702 kb on + strand, within QEN71_RS29150at 6464.702 kb on + strand, within QEN71_RS29150at 6464.703 kb on - strand, within QEN71_RS29150at 6464.703 kb on - strand, within QEN71_RS29150at 6464.755 kb on + strand, within QEN71_RS29150at 6464.756 kb on - strand, within QEN71_RS29150at 6464.756 kb on - strand, within QEN71_RS29150at 6464.861 kb on + strand, within QEN71_RS29150at 6464.969 kb on + strand, within QEN71_RS29150at 6464.970 kb on - strand, within QEN71_RS29150at 6464.970 kb on - strand, within QEN71_RS29150at 6464.970 kb on - strand, within QEN71_RS29150at 6464.970 kb on - strand, within QEN71_RS29150at 6465.062 kb on + strand, within QEN71_RS29150at 6465.063 kb on - strand, within QEN71_RS29150at 6465.063 kb on - strand, within QEN71_RS29150at 6465.063 kb on - strand, within QEN71_RS29150at 6465.104 kb on + strand, within QEN71_RS29150at 6465.104 kb on + strand, within QEN71_RS29150at 6465.104 kb on + strand, within QEN71_RS29150at 6465.104 kb on + strand, within QEN71_RS29150at 6465.105 kb on - strand, within QEN71_RS29150at 6465.105 kb on - strand, within QEN71_RS29150at 6465.174 kb on - strand, within QEN71_RS29150at 6465.243 kb on - strand, within QEN71_RS29150at 6465.243 kb on - strand, within QEN71_RS29150at 6465.363 kb on + strandat 6465.364 kb on - strandat 6465.515 kb on + strand, within QEN71_RS29155at 6465.515 kb on + strand, within QEN71_RS29155at 6465.530 kb on + strand, within QEN71_RS29155at 6465.531 kb on - strand, within QEN71_RS29155at 6465.531 kb on - strand, within QEN71_RS29155at 6465.626 kb on + strand, within QEN71_RS29155at 6465.627 kb on - strand, within QEN71_RS29155at 6465.627 kb on - strand, within QEN71_RS29155at 6465.722 kb on + strand, within QEN71_RS29155at 6465.722 kb on + strand, within QEN71_RS29155at 6465.722 kb on + strand, within QEN71_RS29155at 6465.723 kb on - strand, within QEN71_RS29155at 6465.744 kb on - strand, within QEN71_RS29155at 6465.744 kb on - strand, within QEN71_RS29155at 6465.744 kb on - strand, within QEN71_RS29155at 6465.842 kb on + strand, within QEN71_RS29155at 6465.842 kb on + strand, within QEN71_RS29155at 6465.842 kb on + strand, within QEN71_RS29155at 6465.845 kb on + strand, within QEN71_RS29155at 6465.845 kb on + strand, within QEN71_RS29155at 6465.845 kb on + strand, within QEN71_RS29155at 6465.845 kb on + strand, within QEN71_RS29155at 6465.845 kb on + strand, within QEN71_RS29155at 6465.845 kb on + strand, within QEN71_RS29155at 6465.846 kb on - strand, within QEN71_RS29155at 6465.846 kb on - strand, within QEN71_RS29155at 6465.846 kb on - strand, within QEN71_RS29155at 6465.846 kb on - strand, within QEN71_RS29155at 6465.913 kb on + strand, within QEN71_RS29155at 6465.971 kb on + strand, within QEN71_RS29155at 6465.972 kb on - strand, within QEN71_RS29155at 6465.972 kb on - strand, within QEN71_RS29155at 6465.972 kb on - strand, within QEN71_RS29155at 6466.032 kb on - strand, within QEN71_RS29155at 6466.048 kb on + strand, within QEN71_RS29155at 6466.048 kb on + strand, within QEN71_RS29155at 6466.094 kb on + strandat 6466.106 kb on + strandat 6466.106 kb on + strandat 6466.106 kb on + strandat 6466.107 kb on - strandat 6466.107 kb on - strandat 6466.107 kb on - strandat 6466.198 kb on + strandat 6466.199 kb on - strandat 6466.199 kb on - strandat 6466.199 kb on - strandat 6466.199 kb on - strandat 6466.263 kb on + strand, within QEN71_RS29160at 6466.263 kb on + strand, within QEN71_RS29160at 6466.263 kb on + strand, within QEN71_RS29160at 6466.270 kb on + strand, within QEN71_RS29160

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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6,463,443 - QEN71_RS29145 0.15 +0.1
6,463,458 - QEN71_RS29145 0.17 +1.0
6,463,458 - QEN71_RS29145 0.17 -0.5
6,463,617 + QEN71_RS29145 0.31 +0.9
6,463,617 + QEN71_RS29145 0.31 +0.1
6,463,617 + QEN71_RS29145 0.31 +0.8
6,463,617 + QEN71_RS29145 0.31 +1.7
6,463,618 - QEN71_RS29145 0.32 +1.2
6,463,618 - QEN71_RS29145 0.32 +0.6
6,463,618 - QEN71_RS29145 0.32 +1.2
6,463,665 + QEN71_RS29145 0.36 +0.2
6,463,665 + QEN71_RS29145 0.36 -1.0
6,463,665 + QEN71_RS29145 0.36 +1.4
6,463,665 + QEN71_RS29145 0.36 -0.0
6,463,665 + QEN71_RS29145 0.36 +0.8
6,463,665 + QEN71_RS29145 0.36 +0.3
6,463,665 + QEN71_RS29145 0.36 -0.0
6,463,665 + QEN71_RS29145 0.36 +1.1
6,463,666 - QEN71_RS29145 0.36 -0.7
6,463,666 - QEN71_RS29145 0.36 +1.6
6,463,666 - QEN71_RS29145 0.36 +0.8
6,463,666 - QEN71_RS29145 0.36 +0.9
6,463,666 - QEN71_RS29145 0.36 -1.5
6,463,666 - QEN71_RS29145 0.36 +0.9
6,463,666 - QEN71_RS29145 0.36 +0.3
6,463,666 - QEN71_RS29145 0.36 -0.0
6,463,666 - QEN71_RS29145 0.36 +0.7
6,463,683 + QEN71_RS29145 0.38 +0.7
6,463,683 + QEN71_RS29145 0.38 +0.1
6,463,684 - QEN71_RS29145 0.38 -0.0
6,463,684 - QEN71_RS29145 0.38 -0.0
6,463,737 + QEN71_RS29145 0.43 +0.2
6,463,784 + QEN71_RS29145 0.47 +1.7
6,463,784 + QEN71_RS29145 0.47 +1.0
6,463,784 + QEN71_RS29145 0.47 +0.4
6,463,784 + QEN71_RS29145 0.47 +0.4
6,463,784 + QEN71_RS29145 0.47 +1.0
6,463,785 - QEN71_RS29145 0.47 +0.6
6,463,785 - QEN71_RS29145 0.47 +0.9
6,463,785 - QEN71_RS29145 0.47 +0.3
6,463,785 - QEN71_RS29145 0.47 +0.6
6,463,947 + QEN71_RS29145 0.62 +0.4
6,463,947 + QEN71_RS29145 0.62 -0.4
6,463,947 + QEN71_RS29145 0.62 +1.6
6,463,947 + QEN71_RS29145 0.62 +0.8
6,463,948 - QEN71_RS29145 0.62 -0.8
6,463,948 - QEN71_RS29145 0.62 +1.0
6,463,948 - QEN71_RS29145 0.62 +0.1
6,463,948 - QEN71_RS29145 0.62 -0.6
6,463,948 - QEN71_RS29145 0.62 +0.6
6,463,948 - QEN71_RS29145 0.62 +1.3
6,463,948 - QEN71_RS29145 0.62 +2.0
6,463,948 - QEN71_RS29145 0.62 -0.0
6,463,948 - QEN71_RS29145 0.62 -0.0
6,464,046 + QEN71_RS29145 0.71 +0.9
6,464,046 + QEN71_RS29145 0.71 +2.3
6,464,046 + QEN71_RS29145 0.71 +0.4
6,464,047 - QEN71_RS29145 0.71 +0.1
6,464,061 + QEN71_RS29145 0.73 +0.9
6,464,061 + QEN71_RS29145 0.73 +0.6
6,464,061 + QEN71_RS29145 0.73 +0.6
6,464,061 + QEN71_RS29145 0.73 +0.7
6,464,062 - QEN71_RS29145 0.73 +1.6
6,464,067 + QEN71_RS29145 0.73 -1.8
6,464,068 - QEN71_RS29145 0.73 +1.0
6,464,068 - QEN71_RS29145 0.73 +1.0
6,464,068 - QEN71_RS29145 0.73 +1.5
6,464,118 + QEN71_RS29145 0.78 +0.8
6,464,118 + QEN71_RS29145 0.78 +0.7
6,464,118 + QEN71_RS29145 0.78 +0.5
6,464,119 - QEN71_RS29145 0.78 -0.4
6,464,119 - QEN71_RS29145 0.78 +0.3
6,464,119 - QEN71_RS29145 0.78 +0.4
6,464,119 - QEN71_RS29145 0.78 +1.0
6,464,190 + QEN71_RS29145 0.85 +1.1
6,464,271 + -1.9
6,464,272 - +0.1
6,464,272 - +1.1
6,464,384 + -0.4
6,464,385 - -0.2
6,464,570 + QEN71_RS29150 0.16 -0.2
6,464,570 + QEN71_RS29150 0.16 -0.4
6,464,570 + QEN71_RS29150 0.16 -0.6
6,464,571 - QEN71_RS29150 0.16 +0.0
6,464,571 - QEN71_RS29150 0.16 -0.4
6,464,693 + QEN71_RS29150 0.28 +0.6
6,464,694 - QEN71_RS29150 0.28 -1.0
6,464,702 + QEN71_RS29150 0.29 -0.5
6,464,702 + QEN71_RS29150 0.29 -1.0
6,464,702 + QEN71_RS29150 0.29 +0.2
6,464,702 + QEN71_RS29150 0.29 -0.9
6,464,703 - QEN71_RS29150 0.29 +0.2
6,464,703 - QEN71_RS29150 0.29 -0.4
6,464,755 + QEN71_RS29150 0.34 -1.2
6,464,756 - QEN71_RS29150 0.34 +0.3
6,464,756 - QEN71_RS29150 0.34 -0.5
6,464,861 + QEN71_RS29150 0.45 +0.0
6,464,969 + QEN71_RS29150 0.56 -0.4
6,464,970 - QEN71_RS29150 0.56 +0.2
6,464,970 - QEN71_RS29150 0.56 -2.4
6,464,970 - QEN71_RS29150 0.56 +2.4
6,464,970 - QEN71_RS29150 0.56 +0.3
6,465,062 + QEN71_RS29150 0.65 +0.3
6,465,063 - QEN71_RS29150 0.65 -0.6
6,465,063 - QEN71_RS29150 0.65 -1.2
6,465,063 - QEN71_RS29150 0.65 -0.4
6,465,104 + QEN71_RS29150 0.70 -0.4
6,465,104 + QEN71_RS29150 0.70 +0.7
6,465,104 + QEN71_RS29150 0.70 +0.6
6,465,104 + QEN71_RS29150 0.70 +0.5
6,465,105 - QEN71_RS29150 0.70 +0.2
6,465,105 - QEN71_RS29150 0.70 +0.4
6,465,174 - QEN71_RS29150 0.77 +0.4
6,465,243 - QEN71_RS29150 0.84 -0.8
6,465,243 - QEN71_RS29150 0.84 -1.3
6,465,363 + +0.2
6,465,364 - +0.4
6,465,515 + QEN71_RS29155 0.14 +0.5
6,465,515 + QEN71_RS29155 0.14 -0.4
6,465,530 + QEN71_RS29155 0.16 -1.6
6,465,531 - QEN71_RS29155 0.17 -0.2
6,465,531 - QEN71_RS29155 0.17 +0.6
6,465,626 + QEN71_RS29155 0.30 +0.3
6,465,627 - QEN71_RS29155 0.30 +0.6
6,465,627 - QEN71_RS29155 0.30 +1.0
6,465,722 + QEN71_RS29155 0.43 -1.3
6,465,722 + QEN71_RS29155 0.43 -0.1
6,465,722 + QEN71_RS29155 0.43 +0.1
6,465,723 - QEN71_RS29155 0.43 +0.5
6,465,744 - QEN71_RS29155 0.46 +0.3
6,465,744 - QEN71_RS29155 0.46 -0.9
6,465,744 - QEN71_RS29155 0.46 +1.1
6,465,842 + QEN71_RS29155 0.60 -0.4
6,465,842 + QEN71_RS29155 0.60 +1.7
6,465,842 + QEN71_RS29155 0.60 -0.1
6,465,845 + QEN71_RS29155 0.60 +0.9
6,465,845 + QEN71_RS29155 0.60 +0.4
6,465,845 + QEN71_RS29155 0.60 +1.1
6,465,845 + QEN71_RS29155 0.60 +0.6
6,465,845 + QEN71_RS29155 0.60 +0.2
6,465,845 + QEN71_RS29155 0.60 -1.0
6,465,846 - QEN71_RS29155 0.60 +1.2
6,465,846 - QEN71_RS29155 0.60 +0.7
6,465,846 - QEN71_RS29155 0.60 +0.9
6,465,846 - QEN71_RS29155 0.60 -0.6
6,465,913 + QEN71_RS29155 0.70 +0.9
6,465,971 + QEN71_RS29155 0.78 -1.2
6,465,972 - QEN71_RS29155 0.78 +1.0
6,465,972 - QEN71_RS29155 0.78 +0.5
6,465,972 - QEN71_RS29155 0.78 +0.1
6,466,032 - QEN71_RS29155 0.86 +2.5
6,466,048 + QEN71_RS29155 0.88 +0.1
6,466,048 + QEN71_RS29155 0.88 -0.9
6,466,094 + -0.8
6,466,106 + +0.8
6,466,106 + -0.0
6,466,106 + +0.4
6,466,107 - -0.4
6,466,107 - +0.2
6,466,107 - +0.8
6,466,198 + +1.2
6,466,199 - +1.4
6,466,199 - +0.8
6,466,199 - +0.7
6,466,199 - +0.4
6,466,263 + QEN71_RS29160 0.11 -0.2
6,466,263 + QEN71_RS29160 0.11 +1.6
6,466,263 + QEN71_RS29160 0.11 -1.2
6,466,270 + QEN71_RS29160 0.12 +0.6

Or see this region's nucleotide sequence