Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS27535

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS27525 and QEN71_RS27530 overlap by 80 nucleotidesQEN71_RS27530 and QEN71_RS27535 are separated by 24 nucleotidesQEN71_RS27535 and QEN71_RS27540 are separated by 267 nucleotidesQEN71_RS27540 and QEN71_RS27545 are separated by 1 nucleotides QEN71_RS27525: QEN71_RS27525 - MltA domain-containing protein, at 6,136,994 to 6,138,226 _RS27525 QEN71_RS27530: QEN71_RS27530 - hypothetical protein, at 6,138,147 to 6,138,320 _RS27530 QEN71_RS27535: QEN71_RS27535 - Co2+/Mg2+ efflux protein ApaG, at 6,138,345 to 6,138,719 _RS27535 QEN71_RS27540: QEN71_RS27540 - ribulose-phosphate 3-epimerase, at 6,138,987 to 6,139,670 _RS27540 QEN71_RS27545: QEN71_RS27545 - phosphoglycolate phosphatase, at 6,139,672 to 6,140,400 _RS27545 Position (kb) 6138 6139Strain fitness (log2 ratio) -2 -1 0 1 2at 6138.169 kb on - strandat 6138.203 kb on - strandat 6138.319 kb on - strandat 6138.319 kb on - strandat 6138.427 kb on + strand, within QEN71_RS27535at 6138.469 kb on + strand, within QEN71_RS27535at 6138.469 kb on + strand, within QEN71_RS27535at 6138.469 kb on + strand, within QEN71_RS27535at 6138.469 kb on + strand, within QEN71_RS27535at 6138.469 kb on + strand, within QEN71_RS27535at 6138.469 kb on + strand, within QEN71_RS27535at 6138.469 kb on + strand, within QEN71_RS27535at 6138.469 kb on + strand, within QEN71_RS27535at 6138.469 kb on + strand, within QEN71_RS27535at 6138.470 kb on - strand, within QEN71_RS27535at 6138.470 kb on - strand, within QEN71_RS27535at 6138.470 kb on - strand, within QEN71_RS27535at 6138.470 kb on - strand, within QEN71_RS27535at 6138.470 kb on - strand, within QEN71_RS27535at 6138.470 kb on - strand, within QEN71_RS27535at 6138.470 kb on - strand, within QEN71_RS27535at 6138.470 kb on - strand, within QEN71_RS27535at 6138.470 kb on - strand, within QEN71_RS27535at 6138.478 kb on + strand, within QEN71_RS27535at 6138.478 kb on + strand, within QEN71_RS27535at 6138.478 kb on + strand, within QEN71_RS27535at 6138.478 kb on + strand, within QEN71_RS27535at 6138.479 kb on - strand, within QEN71_RS27535at 6138.479 kb on - strand, within QEN71_RS27535at 6138.561 kb on - strand, within QEN71_RS27535at 6138.566 kb on + strand, within QEN71_RS27535at 6138.566 kb on + strand, within QEN71_RS27535at 6138.566 kb on + strand, within QEN71_RS27535at 6138.566 kb on + strand, within QEN71_RS27535at 6138.566 kb on + strand, within QEN71_RS27535at 6138.566 kb on + strand, within QEN71_RS27535at 6138.566 kb on + strand, within QEN71_RS27535at 6138.566 kb on + strand, within QEN71_RS27535at 6138.566 kb on + strand, within QEN71_RS27535at 6138.566 kb on + strand, within QEN71_RS27535at 6138.566 kb on + strand, within QEN71_RS27535at 6138.566 kb on + strand, within QEN71_RS27535at 6138.566 kb on + strand, within QEN71_RS27535at 6138.567 kb on - strand, within QEN71_RS27535at 6138.567 kb on - strand, within QEN71_RS27535at 6138.567 kb on - strand, within QEN71_RS27535at 6138.567 kb on - strand, within QEN71_RS27535at 6138.567 kb on - strand, within QEN71_RS27535at 6138.567 kb on - strand, within QEN71_RS27535at 6138.567 kb on - strand, within QEN71_RS27535at 6138.567 kb on - strand, within QEN71_RS27535at 6138.567 kb on - strand, within QEN71_RS27535at 6138.567 kb on - strand, within QEN71_RS27535at 6138.588 kb on + strand, within QEN71_RS27535at 6138.588 kb on + strand, within QEN71_RS27535at 6138.588 kb on + strand, within QEN71_RS27535at 6138.589 kb on - strand, within QEN71_RS27535at 6138.589 kb on - strand, within QEN71_RS27535at 6138.589 kb on - strand, within QEN71_RS27535at 6138.632 kb on - strand, within QEN71_RS27535at 6138.643 kb on + strand, within QEN71_RS27535at 6138.643 kb on + strand, within QEN71_RS27535at 6138.643 kb on + strand, within QEN71_RS27535at 6138.643 kb on + strand, within QEN71_RS27535at 6138.644 kb on - strand, within QEN71_RS27535at 6138.644 kb on - strand, within QEN71_RS27535at 6138.679 kb on + strand, within QEN71_RS27535at 6138.679 kb on + strand, within QEN71_RS27535at 6138.679 kb on + strand, within QEN71_RS27535at 6138.679 kb on + strand, within QEN71_RS27535at 6138.679 kb on + strand, within QEN71_RS27535at 6138.679 kb on + strand, within QEN71_RS27535at 6138.679 kb on + strand, within QEN71_RS27535at 6138.679 kb on + strand, within QEN71_RS27535at 6138.679 kb on + strand, within QEN71_RS27535at 6138.679 kb on + strand, within QEN71_RS27535at 6138.680 kb on - strand, within QEN71_RS27535at 6138.680 kb on - strand, within QEN71_RS27535at 6138.680 kb on - strand, within QEN71_RS27535at 6138.680 kb on - strand, within QEN71_RS27535at 6138.680 kb on - strand, within QEN71_RS27535at 6138.680 kb on - strand, within QEN71_RS27535at 6138.680 kb on - strand, within QEN71_RS27535at 6138.680 kb on - strand, within QEN71_RS27535at 6138.680 kb on - strand, within QEN71_RS27535at 6138.680 kb on - strand, within QEN71_RS27535at 6138.893 kb on - strandat 6138.893 kb on - strandat 6138.949 kb on + strandat 6138.949 kb on + strandat 6138.950 kb on - strandat 6139.486 kb on - strand, within QEN71_RS27540at 6139.577 kb on + strand, within QEN71_RS27540at 6139.618 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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6,138,169 - -0.9
6,138,203 - +0.6
6,138,319 - -2.0
6,138,319 - +0.0
6,138,427 + QEN71_RS27535 0.22 -0.9
6,138,469 + QEN71_RS27535 0.33 +0.7
6,138,469 + QEN71_RS27535 0.33 -1.6
6,138,469 + QEN71_RS27535 0.33 +0.4
6,138,469 + QEN71_RS27535 0.33 +1.1
6,138,469 + QEN71_RS27535 0.33 +0.5
6,138,469 + QEN71_RS27535 0.33 +0.8
6,138,469 + QEN71_RS27535 0.33 -0.3
6,138,469 + QEN71_RS27535 0.33 +0.5
6,138,469 + QEN71_RS27535 0.33 +0.2
6,138,470 - QEN71_RS27535 0.33 +0.4
6,138,470 - QEN71_RS27535 0.33 -0.4
6,138,470 - QEN71_RS27535 0.33 -1.3
6,138,470 - QEN71_RS27535 0.33 +0.2
6,138,470 - QEN71_RS27535 0.33 -1.1
6,138,470 - QEN71_RS27535 0.33 -0.9
6,138,470 - QEN71_RS27535 0.33 -0.5
6,138,470 - QEN71_RS27535 0.33 -0.2
6,138,470 - QEN71_RS27535 0.33 -0.6
6,138,478 + QEN71_RS27535 0.35 +1.3
6,138,478 + QEN71_RS27535 0.35 +0.1
6,138,478 + QEN71_RS27535 0.35 +1.5
6,138,478 + QEN71_RS27535 0.35 +0.3
6,138,479 - QEN71_RS27535 0.36 -0.2
6,138,479 - QEN71_RS27535 0.36 -0.1
6,138,561 - QEN71_RS27535 0.58 +0.1
6,138,566 + QEN71_RS27535 0.59 +2.1
6,138,566 + QEN71_RS27535 0.59 -0.8
6,138,566 + QEN71_RS27535 0.59 +1.1
6,138,566 + QEN71_RS27535 0.59 +0.1
6,138,566 + QEN71_RS27535 0.59 -0.1
6,138,566 + QEN71_RS27535 0.59 +0.1
6,138,566 + QEN71_RS27535 0.59 +0.3
6,138,566 + QEN71_RS27535 0.59 -1.2
6,138,566 + QEN71_RS27535 0.59 +0.2
6,138,566 + QEN71_RS27535 0.59 +0.2
6,138,566 + QEN71_RS27535 0.59 -0.1
6,138,566 + QEN71_RS27535 0.59 +0.7
6,138,566 + QEN71_RS27535 0.59 +0.1
6,138,567 - QEN71_RS27535 0.59 -0.7
6,138,567 - QEN71_RS27535 0.59 -0.2
6,138,567 - QEN71_RS27535 0.59 +0.5
6,138,567 - QEN71_RS27535 0.59 +0.8
6,138,567 - QEN71_RS27535 0.59 -0.7
6,138,567 - QEN71_RS27535 0.59 -0.5
6,138,567 - QEN71_RS27535 0.59 -0.4
6,138,567 - QEN71_RS27535 0.59 +0.9
6,138,567 - QEN71_RS27535 0.59 +1.1
6,138,567 - QEN71_RS27535 0.59 +0.3
6,138,588 + QEN71_RS27535 0.65 +2.1
6,138,588 + QEN71_RS27535 0.65 -0.8
6,138,588 + QEN71_RS27535 0.65 -1.3
6,138,589 - QEN71_RS27535 0.65 -1.4
6,138,589 - QEN71_RS27535 0.65 -0.4
6,138,589 - QEN71_RS27535 0.65 -1.3
6,138,632 - QEN71_RS27535 0.77 -0.9
6,138,643 + QEN71_RS27535 0.79 -1.5
6,138,643 + QEN71_RS27535 0.79 -2.2
6,138,643 + QEN71_RS27535 0.79 +1.5
6,138,643 + QEN71_RS27535 0.79 -1.1
6,138,644 - QEN71_RS27535 0.80 +0.2
6,138,644 - QEN71_RS27535 0.80 +0.6
6,138,679 + QEN71_RS27535 0.89 -0.4
6,138,679 + QEN71_RS27535 0.89 -0.8
6,138,679 + QEN71_RS27535 0.89 +2.1
6,138,679 + QEN71_RS27535 0.89 +0.2
6,138,679 + QEN71_RS27535 0.89 -1.6
6,138,679 + QEN71_RS27535 0.89 +0.3
6,138,679 + QEN71_RS27535 0.89 +0.7
6,138,679 + QEN71_RS27535 0.89 -0.1
6,138,679 + QEN71_RS27535 0.89 +0.0
6,138,679 + QEN71_RS27535 0.89 +0.0
6,138,680 - QEN71_RS27535 0.89 -1.5
6,138,680 - QEN71_RS27535 0.89 -0.1
6,138,680 - QEN71_RS27535 0.89 +0.8
6,138,680 - QEN71_RS27535 0.89 -1.4
6,138,680 - QEN71_RS27535 0.89 -0.3
6,138,680 - QEN71_RS27535 0.89 +0.2
6,138,680 - QEN71_RS27535 0.89 -0.2
6,138,680 - QEN71_RS27535 0.89 -0.1
6,138,680 - QEN71_RS27535 0.89 +0.6
6,138,680 - QEN71_RS27535 0.89 +0.5
6,138,893 - +0.5
6,138,893 - -0.5
6,138,949 + -0.7
6,138,949 + +2.1
6,138,950 - -0.6
6,139,486 - QEN71_RS27540 0.73 +0.1
6,139,577 + QEN71_RS27540 0.86 -0.8
6,139,618 - +0.1

Or see this region's nucleotide sequence