Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS27175

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS27170 and QEN71_RS27175 are separated by 3 nucleotidesQEN71_RS27175 and QEN71_RS27180 are separated by 81 nucleotides QEN71_RS27170: QEN71_RS27170 - acetyl-CoA carboxylase biotin carboxylase subunit, at 6,057,967 to 6,059,334 _RS27170 QEN71_RS27175: QEN71_RS27175 - 50S ribosomal protein L11 methyltransferase, at 6,059,338 to 6,060,240 _RS27175 QEN71_RS27180: QEN71_RS27180 - DUF3426 domain-containing protein, at 6,060,322 to 6,062,085 _RS27180 Position (kb) 6059 6060 6061Strain fitness (log2 ratio) -2 -1 0 1 2at 6059.332 kb on + strandat 6059.332 kb on + strandat 6059.332 kb on + strandat 6059.332 kb on + strandat 6059.332 kb on + strandat 6059.333 kb on - strandat 6059.333 kb on - strandat 6059.333 kb on - strandat 6059.333 kb on - strandat 6059.344 kb on + strandat 6059.344 kb on + strandat 6059.345 kb on - strandat 6059.451 kb on + strand, within QEN71_RS27175at 6059.601 kb on + strand, within QEN71_RS27175at 6059.742 kb on - strand, within QEN71_RS27175at 6059.851 kb on + strand, within QEN71_RS27175at 6059.986 kb on + strand, within QEN71_RS27175at 6059.986 kb on + strand, within QEN71_RS27175at 6059.986 kb on + strand, within QEN71_RS27175at 6059.986 kb on + strand, within QEN71_RS27175at 6059.986 kb on + strand, within QEN71_RS27175at 6059.986 kb on + strand, within QEN71_RS27175at 6059.986 kb on + strand, within QEN71_RS27175at 6059.987 kb on - strand, within QEN71_RS27175at 6059.987 kb on - strand, within QEN71_RS27175at 6059.987 kb on - strand, within QEN71_RS27175at 6059.987 kb on - strand, within QEN71_RS27175at 6059.987 kb on - strand, within QEN71_RS27175at 6059.987 kb on - strand, within QEN71_RS27175at 6059.987 kb on - strand, within QEN71_RS27175at 6059.987 kb on - strand, within QEN71_RS27175at 6060.158 kb on - strandat 6060.206 kb on + strandat 6060.206 kb on + strandat 6060.206 kb on + strandat 6060.206 kb on + strandat 6060.206 kb on + strandat 6060.206 kb on + strandat 6060.206 kb on + strandat 6060.206 kb on + strandat 6060.206 kb on + strandat 6060.206 kb on + strandat 6060.206 kb on + strandat 6060.206 kb on + strandat 6060.206 kb on + strandat 6060.206 kb on + strandat 6060.206 kb on + strandat 6060.206 kb on + strandat 6060.206 kb on + strandat 6060.206 kb on + strandat 6060.206 kb on + strandat 6060.207 kb on - strandat 6060.207 kb on - strandat 6060.207 kb on - strandat 6060.207 kb on - strandat 6060.207 kb on - strandat 6060.207 kb on - strandat 6060.207 kb on - strandat 6060.207 kb on - strandat 6060.238 kb on + strandat 6060.238 kb on + strandat 6060.239 kb on - strandat 6060.239 kb on - strandat 6060.239 kb on - strandat 6060.239 kb on - strandat 6060.239 kb on - strandat 6060.243 kb on + strandat 6060.243 kb on + strandat 6060.243 kb on + strandat 6060.243 kb on + strandat 6060.243 kb on + strandat 6060.243 kb on + strandat 6060.244 kb on - strandat 6060.244 kb on - strandat 6060.250 kb on + strandat 6060.250 kb on + strandat 6060.250 kb on + strandat 6060.250 kb on + strandat 6060.250 kb on + strandat 6060.250 kb on + strandat 6060.250 kb on + strandat 6060.250 kb on + strandat 6060.251 kb on - strandat 6060.251 kb on - strandat 6060.251 kb on - strandat 6060.251 kb on - strandat 6060.251 kb on - strandat 6060.251 kb on - strandat 6060.251 kb on - strandat 6060.321 kb on + strandat 6060.321 kb on + strandat 6060.321 kb on + strandat 6060.321 kb on + strandat 6060.321 kb on + strandat 6060.321 kb on + strandat 6060.322 kb on - strandat 6060.322 kb on - strandat 6060.329 kb on + strandat 6060.329 kb on + strandat 6060.329 kb on + strandat 6060.329 kb on + strandat 6060.329 kb on + strandat 6060.329 kb on + strandat 6060.330 kb on - strandat 6060.330 kb on - strandat 6060.330 kb on - strandat 6060.330 kb on - strandat 6060.330 kb on - strandat 6060.330 kb on - strandat 6060.428 kb on + strandat 6060.428 kb on + strandat 6060.428 kb on + strandat 6060.428 kb on + strandat 6060.428 kb on + strandat 6060.428 kb on + strandat 6060.428 kb on + strandat 6060.428 kb on + strandat 6060.428 kb on + strandat 6060.428 kb on + strandat 6060.429 kb on - strandat 6060.429 kb on - strandat 6060.429 kb on - strandat 6060.474 kb on + strandat 6060.474 kb on + strandat 6060.517 kb on + strand, within QEN71_RS27180at 6060.518 kb on - strand, within QEN71_RS27180at 6060.518 kb on - strand, within QEN71_RS27180at 6060.518 kb on - strand, within QEN71_RS27180at 6060.862 kb on - strand, within QEN71_RS27180

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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6,059,332 + +0.1
6,059,332 + +1.0
6,059,332 + -0.5
6,059,332 + +0.0
6,059,332 + -0.6
6,059,333 - -0.4
6,059,333 - -0.4
6,059,333 - -0.5
6,059,333 - -0.7
6,059,344 + -0.6
6,059,344 + -1.3
6,059,345 - -0.0
6,059,451 + QEN71_RS27175 0.13 -0.4
6,059,601 + QEN71_RS27175 0.29 +0.2
6,059,742 - QEN71_RS27175 0.45 +0.3
6,059,851 + QEN71_RS27175 0.57 -0.0
6,059,986 + QEN71_RS27175 0.72 +0.5
6,059,986 + QEN71_RS27175 0.72 +0.1
6,059,986 + QEN71_RS27175 0.72 +0.0
6,059,986 + QEN71_RS27175 0.72 -1.8
6,059,986 + QEN71_RS27175 0.72 -0.9
6,059,986 + QEN71_RS27175 0.72 -1.9
6,059,986 + QEN71_RS27175 0.72 +0.4
6,059,987 - QEN71_RS27175 0.72 +0.2
6,059,987 - QEN71_RS27175 0.72 -0.5
6,059,987 - QEN71_RS27175 0.72 +0.1
6,059,987 - QEN71_RS27175 0.72 -0.3
6,059,987 - QEN71_RS27175 0.72 +0.1
6,059,987 - QEN71_RS27175 0.72 +0.2
6,059,987 - QEN71_RS27175 0.72 +1.1
6,059,987 - QEN71_RS27175 0.72 -0.9
6,060,158 - +0.7
6,060,206 + -0.4
6,060,206 + -0.8
6,060,206 + +0.1
6,060,206 + +1.4
6,060,206 + -1.1
6,060,206 + +0.1
6,060,206 + +0.3
6,060,206 + -0.5
6,060,206 + -1.2
6,060,206 + +0.7
6,060,206 + +0.3
6,060,206 + +1.3
6,060,206 + -0.7
6,060,206 + -0.2
6,060,206 + -1.8
6,060,206 + +1.2
6,060,206 + +0.7
6,060,206 + -0.5
6,060,206 + -0.3
6,060,207 - -0.4
6,060,207 - -0.2
6,060,207 - +0.2
6,060,207 - +0.2
6,060,207 - -0.3
6,060,207 - -0.1
6,060,207 - +0.7
6,060,207 - +0.7
6,060,238 + -0.2
6,060,238 + +0.4
6,060,239 - -0.9
6,060,239 - -0.0
6,060,239 - -0.4
6,060,239 - +1.8
6,060,239 - -0.4
6,060,243 + -0.0
6,060,243 + +0.5
6,060,243 + -0.6
6,060,243 + +0.7
6,060,243 + -0.8
6,060,243 + +0.2
6,060,244 - -0.1
6,060,244 - +0.1
6,060,250 + +0.7
6,060,250 + -0.1
6,060,250 + +0.2
6,060,250 + -0.1
6,060,250 + +0.8
6,060,250 + -0.3
6,060,250 + -0.2
6,060,250 + +0.9
6,060,251 - +0.6
6,060,251 - -0.7
6,060,251 - -0.3
6,060,251 - +0.3
6,060,251 - +0.2
6,060,251 - -0.4
6,060,251 - -1.4
6,060,321 + -0.9
6,060,321 + -0.9
6,060,321 + +1.3
6,060,321 + -0.1
6,060,321 + +1.9
6,060,321 + +0.8
6,060,322 - -0.3
6,060,322 - -1.5
6,060,329 + -0.3
6,060,329 + -1.7
6,060,329 + -0.8
6,060,329 + +1.8
6,060,329 + +1.5
6,060,329 + -0.3
6,060,330 - +0.4
6,060,330 - +0.2
6,060,330 - +0.1
6,060,330 - +1.1
6,060,330 - -2.0
6,060,330 - +0.3
6,060,428 + -0.1
6,060,428 + -0.2
6,060,428 + +1.2
6,060,428 + +2.4
6,060,428 + -0.7
6,060,428 + +0.7
6,060,428 + -0.2
6,060,428 + -0.0
6,060,428 + -0.6
6,060,428 + -0.7
6,060,429 - +0.8
6,060,429 - +1.2
6,060,429 - +0.5
6,060,474 + +0.3
6,060,474 + -0.3
6,060,517 + QEN71_RS27180 0.11 -0.3
6,060,518 - QEN71_RS27180 0.11 +1.0
6,060,518 - QEN71_RS27180 0.11 +0.2
6,060,518 - QEN71_RS27180 0.11 -0.2
6,060,862 - QEN71_RS27180 0.31 +1.1

Or see this region's nucleotide sequence