Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS27165

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS27155 and QEN71_RS27160 are separated by 194 nucleotidesQEN71_RS27160 and QEN71_RS27165 are separated by 68 nucleotidesQEN71_RS27165 and QEN71_RS27170 are separated by 141 nucleotides QEN71_RS27155: QEN71_RS27155 - TlpA disulfide reductase family protein, at 6,056,082 to 6,056,630 _RS27155 QEN71_RS27160: QEN71_RS27160 - type II 3-dehydroquinate dehydratase, at 6,056,825 to 6,057,289 _RS27160 QEN71_RS27165: QEN71_RS27165 - acetyl-CoA carboxylase biotin carboxyl carrier protein, at 6,057,358 to 6,057,825 _RS27165 QEN71_RS27170: QEN71_RS27170 - acetyl-CoA carboxylase biotin carboxylase subunit, at 6,057,967 to 6,059,334 _RS27170 Position (kb) 6057 6058Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6056.373 kb on + strand, within QEN71_RS27155at 6056.373 kb on + strand, within QEN71_RS27155at 6056.373 kb on + strand, within QEN71_RS27155at 6056.373 kb on + strand, within QEN71_RS27155at 6056.373 kb on + strand, within QEN71_RS27155at 6056.373 kb on + strand, within QEN71_RS27155at 6056.374 kb on - strand, within QEN71_RS27155at 6056.374 kb on - strand, within QEN71_RS27155at 6056.388 kb on - strand, within QEN71_RS27155at 6056.460 kb on + strand, within QEN71_RS27155at 6056.460 kb on + strand, within QEN71_RS27155at 6056.460 kb on + strand, within QEN71_RS27155at 6056.460 kb on + strand, within QEN71_RS27155at 6056.461 kb on - strand, within QEN71_RS27155at 6056.461 kb on - strand, within QEN71_RS27155at 6056.469 kb on + strand, within QEN71_RS27155at 6056.469 kb on + strand, within QEN71_RS27155at 6056.469 kb on + strand, within QEN71_RS27155at 6056.469 kb on + strand, within QEN71_RS27155at 6056.469 kb on + strand, within QEN71_RS27155at 6056.470 kb on - strand, within QEN71_RS27155at 6056.470 kb on - strand, within QEN71_RS27155at 6056.470 kb on - strand, within QEN71_RS27155at 6056.470 kb on - strand, within QEN71_RS27155at 6056.470 kb on - strand, within QEN71_RS27155at 6056.470 kb on - strand, within QEN71_RS27155at 6056.535 kb on + strand, within QEN71_RS27155at 6056.535 kb on + strand, within QEN71_RS27155at 6056.536 kb on - strand, within QEN71_RS27155at 6056.545 kb on + strand, within QEN71_RS27155at 6056.545 kb on + strand, within QEN71_RS27155at 6056.545 kb on + strand, within QEN71_RS27155at 6056.546 kb on - strand, within QEN71_RS27155at 6056.546 kb on - strand, within QEN71_RS27155at 6056.566 kb on + strand, within QEN71_RS27155at 6056.566 kb on + strand, within QEN71_RS27155at 6056.566 kb on + strand, within QEN71_RS27155at 6056.567 kb on - strand, within QEN71_RS27155at 6056.626 kb on + strandat 6056.626 kb on + strandat 6056.627 kb on - strandat 6056.627 kb on - strandat 6056.652 kb on + strandat 6056.653 kb on - strandat 6056.653 kb on - strandat 6056.653 kb on - strandat 6056.694 kb on + strandat 6056.695 kb on - strandat 6056.713 kb on + strandat 6056.714 kb on - strandat 6056.723 kb on + strandat 6056.765 kb on + strandat 6056.789 kb on + strandat 6056.789 kb on + strandat 6056.891 kb on + strand, within QEN71_RS27160at 6056.891 kb on + strand, within QEN71_RS27160at 6056.891 kb on + strand, within QEN71_RS27160at 6056.891 kb on + strand, within QEN71_RS27160at 6056.891 kb on + strand, within QEN71_RS27160at 6056.891 kb on + strand, within QEN71_RS27160at 6056.891 kb on + strand, within QEN71_RS27160at 6056.891 kb on + strand, within QEN71_RS27160at 6056.891 kb on + strand, within QEN71_RS27160at 6056.891 kb on + strand, within QEN71_RS27160at 6056.902 kb on + strand, within QEN71_RS27160at 6056.902 kb on + strand, within QEN71_RS27160at 6057.059 kb on + strand, within QEN71_RS27160at 6057.059 kb on + strand, within QEN71_RS27160at 6057.059 kb on + strand, within QEN71_RS27160at 6057.059 kb on + strand, within QEN71_RS27160at 6057.059 kb on + strand, within QEN71_RS27160at 6057.067 kb on + strand, within QEN71_RS27160at 6057.067 kb on + strand, within QEN71_RS27160at 6057.067 kb on + strand, within QEN71_RS27160at 6057.067 kb on + strand, within QEN71_RS27160at 6057.067 kb on + strand, within QEN71_RS27160at 6057.067 kb on + strand, within QEN71_RS27160at 6057.067 kb on + strand, within QEN71_RS27160at 6057.067 kb on + strand, within QEN71_RS27160at 6057.067 kb on + strand, within QEN71_RS27160at 6057.067 kb on + strand, within QEN71_RS27160at 6057.067 kb on + strand, within QEN71_RS27160at 6057.067 kb on + strand, within QEN71_RS27160at 6057.067 kb on + strand, within QEN71_RS27160at 6057.067 kb on + strand, within QEN71_RS27160at 6057.157 kb on + strand, within QEN71_RS27160at 6057.170 kb on + strand, within QEN71_RS27160at 6057.170 kb on + strand, within QEN71_RS27160at 6057.170 kb on + strand, within QEN71_RS27160at 6057.221 kb on + strand, within QEN71_RS27160at 6057.221 kb on + strand, within QEN71_RS27160at 6057.221 kb on + strand, within QEN71_RS27160at 6057.221 kb on + strand, within QEN71_RS27160at 6057.227 kb on + strand, within QEN71_RS27160at 6057.227 kb on + strand, within QEN71_RS27160at 6057.227 kb on + strand, within QEN71_RS27160at 6057.227 kb on + strand, within QEN71_RS27160at 6057.227 kb on + strand, within QEN71_RS27160at 6057.239 kb on + strand, within QEN71_RS27160at 6057.239 kb on + strand, within QEN71_RS27160at 6057.239 kb on + strand, within QEN71_RS27160at 6057.826 kb on + strandat 6057.839 kb on + strandat 6057.871 kb on + strandat 6057.871 kb on + strandat 6057.966 kb on + strandat 6057.966 kb on + strandat 6057.966 kb on + strandat 6057.966 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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6,056,373 + QEN71_RS27155 0.53 -1.2
6,056,373 + QEN71_RS27155 0.53 -2.7
6,056,373 + QEN71_RS27155 0.53 -2.0
6,056,373 + QEN71_RS27155 0.53 +0.5
6,056,373 + QEN71_RS27155 0.53 -1.8
6,056,373 + QEN71_RS27155 0.53 +0.1
6,056,374 - QEN71_RS27155 0.53 +0.7
6,056,374 - QEN71_RS27155 0.53 -0.3
6,056,388 - QEN71_RS27155 0.56 -0.0
6,056,460 + QEN71_RS27155 0.69 -2.0
6,056,460 + QEN71_RS27155 0.69 -1.1
6,056,460 + QEN71_RS27155 0.69 -0.7
6,056,460 + QEN71_RS27155 0.69 +0.4
6,056,461 - QEN71_RS27155 0.69 -0.3
6,056,461 - QEN71_RS27155 0.69 -0.2
6,056,469 + QEN71_RS27155 0.70 +0.0
6,056,469 + QEN71_RS27155 0.70 -1.8
6,056,469 + QEN71_RS27155 0.70 -1.3
6,056,469 + QEN71_RS27155 0.70 +0.0
6,056,469 + QEN71_RS27155 0.70 -0.3
6,056,470 - QEN71_RS27155 0.71 -1.7
6,056,470 - QEN71_RS27155 0.71 +2.0
6,056,470 - QEN71_RS27155 0.71 -0.8
6,056,470 - QEN71_RS27155 0.71 -1.7
6,056,470 - QEN71_RS27155 0.71 +0.0
6,056,470 - QEN71_RS27155 0.71 -0.3
6,056,535 + QEN71_RS27155 0.83 -0.0
6,056,535 + QEN71_RS27155 0.83 +0.0
6,056,536 - QEN71_RS27155 0.83 +0.0
6,056,545 + QEN71_RS27155 0.84 -1.1
6,056,545 + QEN71_RS27155 0.84 -0.5
6,056,545 + QEN71_RS27155 0.84 +0.0
6,056,546 - QEN71_RS27155 0.85 -1.3
6,056,546 - QEN71_RS27155 0.85 +0.7
6,056,566 + QEN71_RS27155 0.88 +0.3
6,056,566 + QEN71_RS27155 0.88 -0.2
6,056,566 + QEN71_RS27155 0.88 +0.7
6,056,567 - QEN71_RS27155 0.88 -1.9
6,056,626 + +0.6
6,056,626 + -0.3
6,056,627 - -1.7
6,056,627 - -0.1
6,056,652 + -0.7
6,056,653 - -0.2
6,056,653 - +1.0
6,056,653 - +0.4
6,056,694 + -1.4
6,056,695 - -0.3
6,056,713 + +0.1
6,056,714 - -0.8
6,056,723 + -0.8
6,056,765 + -0.5
6,056,789 + +0.2
6,056,789 + -0.3
6,056,891 + QEN71_RS27160 0.14 +0.4
6,056,891 + QEN71_RS27160 0.14 -0.7
6,056,891 + QEN71_RS27160 0.14 +1.5
6,056,891 + QEN71_RS27160 0.14 -1.2
6,056,891 + QEN71_RS27160 0.14 -0.7
6,056,891 + QEN71_RS27160 0.14 +1.5
6,056,891 + QEN71_RS27160 0.14 +0.9
6,056,891 + QEN71_RS27160 0.14 -0.6
6,056,891 + QEN71_RS27160 0.14 -1.3
6,056,891 + QEN71_RS27160 0.14 -0.0
6,056,902 + QEN71_RS27160 0.17 -0.2
6,056,902 + QEN71_RS27160 0.17 +0.2
6,057,059 + QEN71_RS27160 0.50 -0.9
6,057,059 + QEN71_RS27160 0.50 -0.1
6,057,059 + QEN71_RS27160 0.50 -0.8
6,057,059 + QEN71_RS27160 0.50 +0.1
6,057,059 + QEN71_RS27160 0.50 +0.1
6,057,067 + QEN71_RS27160 0.52 -1.1
6,057,067 + QEN71_RS27160 0.52 +0.4
6,057,067 + QEN71_RS27160 0.52 -0.1
6,057,067 + QEN71_RS27160 0.52 -0.5
6,057,067 + QEN71_RS27160 0.52 -1.9
6,057,067 + QEN71_RS27160 0.52 -0.6
6,057,067 + QEN71_RS27160 0.52 +0.0
6,057,067 + QEN71_RS27160 0.52 -1.4
6,057,067 + QEN71_RS27160 0.52 +1.4
6,057,067 + QEN71_RS27160 0.52 -2.2
6,057,067 + QEN71_RS27160 0.52 +0.8
6,057,067 + QEN71_RS27160 0.52 -2.0
6,057,067 + QEN71_RS27160 0.52 +2.1
6,057,067 + QEN71_RS27160 0.52 +1.1
6,057,157 + QEN71_RS27160 0.71 -0.3
6,057,170 + QEN71_RS27160 0.74 -2.0
6,057,170 + QEN71_RS27160 0.74 -1.9
6,057,170 + QEN71_RS27160 0.74 -0.6
6,057,221 + QEN71_RS27160 0.85 -0.9
6,057,221 + QEN71_RS27160 0.85 -1.1
6,057,221 + QEN71_RS27160 0.85 -1.5
6,057,221 + QEN71_RS27160 0.85 -2.0
6,057,227 + QEN71_RS27160 0.86 -0.3
6,057,227 + QEN71_RS27160 0.86 -0.4
6,057,227 + QEN71_RS27160 0.86 -2.8
6,057,227 + QEN71_RS27160 0.86 -0.3
6,057,227 + QEN71_RS27160 0.86 -1.7
6,057,239 + QEN71_RS27160 0.89 -0.9
6,057,239 + QEN71_RS27160 0.89 -1.9
6,057,239 + QEN71_RS27160 0.89 +0.0
6,057,826 + -0.2
6,057,839 + +0.4
6,057,871 + -1.9
6,057,871 + +0.5
6,057,966 + -0.1
6,057,966 + -0.7
6,057,966 + -1.6
6,057,966 + -1.9

Or see this region's nucleotide sequence