Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS25210

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS25205 and QEN71_RS25210 are separated by 136 nucleotidesQEN71_RS25210 and QEN71_RS25215 are separated by 3 nucleotides QEN71_RS25205: QEN71_RS25205 - leucyl aminopeptidase, at 5,607,828 to 5,609,339 _RS25205 QEN71_RS25210: QEN71_RS25210 - LPS export ABC transporter permease LptF, at 5,609,476 to 5,610,588 _RS25210 QEN71_RS25215: QEN71_RS25215 - LPS export ABC transporter permease LptG, at 5,610,592 to 5,611,740 _RS25215 Position (kb) 5609 5610 5611Strain fitness (log2 ratio) -1 0 1 2at 5608.715 kb on - strand, within QEN71_RS25205at 5608.715 kb on - strand, within QEN71_RS25205at 5608.904 kb on - strand, within QEN71_RS25205at 5608.904 kb on - strand, within QEN71_RS25205at 5608.904 kb on - strand, within QEN71_RS25205at 5608.986 kb on - strand, within QEN71_RS25205at 5609.051 kb on - strand, within QEN71_RS25205at 5609.325 kb on + strandat 5609.369 kb on + strandat 5609.387 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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5,608,715 - QEN71_RS25205 0.59 +1.7
5,608,715 - QEN71_RS25205 0.59 +0.7
5,608,904 - QEN71_RS25205 0.71 +0.4
5,608,904 - QEN71_RS25205 0.71 +0.7
5,608,904 - QEN71_RS25205 0.71 +2.0
5,608,986 - QEN71_RS25205 0.77 +0.4
5,609,051 - QEN71_RS25205 0.81 +1.3
5,609,325 + -0.6
5,609,369 + -0.9
5,609,387 + -0.9

Or see this region's nucleotide sequence