Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS24035

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS24025 and QEN71_RS24030 overlap by 4 nucleotidesQEN71_RS24030 and QEN71_RS24035 are separated by 32 nucleotidesQEN71_RS24035 and QEN71_RS24040 are separated by 58 nucleotides QEN71_RS24025: QEN71_RS24025 - enoyl-CoA hydratase, at 5,348,942 to 5,349,730 _RS24025 QEN71_RS24030: QEN71_RS24030 - histidine phosphatase family protein, at 5,349,727 to 5,350,449 _RS24030 QEN71_RS24035: QEN71_RS24035 - phosphotransferase, at 5,350,482 to 5,351,588 _RS24035 QEN71_RS24040: QEN71_RS24040 - acyl-CoA dehydrogenase family protein, at 5,351,647 to 5,352,876 _RS24040 Position (kb) 5350 5351 5352Strain fitness (log2 ratio) -2 -1 0 1 2at 5349.722 kb on + strandat 5349.722 kb on + strandat 5349.722 kb on + strandat 5349.722 kb on + strandat 5349.723 kb on - strandat 5349.723 kb on - strandat 5349.723 kb on - strandat 5349.723 kb on - strandat 5349.723 kb on - strandat 5349.723 kb on - strandat 5349.742 kb on + strandat 5349.769 kb on + strandat 5349.769 kb on + strandat 5349.769 kb on + strandat 5349.769 kb on + strandat 5349.769 kb on + strandat 5349.770 kb on - strandat 5349.770 kb on - strandat 5349.770 kb on - strandat 5349.770 kb on - strandat 5349.770 kb on - strandat 5349.770 kb on - strandat 5349.770 kb on - strandat 5349.796 kb on + strandat 5349.796 kb on + strandat 5349.796 kb on + strandat 5349.796 kb on + strandat 5349.796 kb on + strandat 5349.796 kb on + strandat 5349.796 kb on + strandat 5349.797 kb on - strandat 5349.804 kb on + strand, within QEN71_RS24030at 5349.804 kb on + strand, within QEN71_RS24030at 5349.804 kb on + strand, within QEN71_RS24030at 5349.804 kb on + strand, within QEN71_RS24030at 5349.804 kb on + strand, within QEN71_RS24030at 5349.995 kb on - strand, within QEN71_RS24030at 5350.398 kb on + strandat 5350.398 kb on + strandat 5350.398 kb on + strandat 5350.398 kb on + strandat 5350.399 kb on - strandat 5350.399 kb on - strandat 5350.399 kb on - strandat 5350.399 kb on - strandat 5350.399 kb on - strandat 5350.417 kb on + strandat 5350.418 kb on - strandat 5350.418 kb on - strandat 5350.418 kb on - strandat 5350.447 kb on + strandat 5350.447 kb on + strandat 5350.448 kb on - strandat 5350.527 kb on + strandat 5350.527 kb on + strandat 5350.528 kb on - strandat 5350.528 kb on - strandat 5350.701 kb on + strand, within QEN71_RS24035at 5350.701 kb on + strand, within QEN71_RS24035at 5350.701 kb on + strand, within QEN71_RS24035at 5350.701 kb on + strand, within QEN71_RS24035at 5350.701 kb on + strand, within QEN71_RS24035at 5350.701 kb on + strand, within QEN71_RS24035at 5350.701 kb on + strand, within QEN71_RS24035at 5350.701 kb on + strand, within QEN71_RS24035at 5350.701 kb on + strand, within QEN71_RS24035at 5350.701 kb on + strand, within QEN71_RS24035at 5350.701 kb on + strand, within QEN71_RS24035at 5350.701 kb on + strand, within QEN71_RS24035at 5350.701 kb on + strand, within QEN71_RS24035at 5350.702 kb on - strand, within QEN71_RS24035at 5350.702 kb on - strand, within QEN71_RS24035at 5350.702 kb on - strand, within QEN71_RS24035at 5350.702 kb on - strand, within QEN71_RS24035at 5350.702 kb on - strand, within QEN71_RS24035at 5350.770 kb on + strand, within QEN71_RS24035at 5350.863 kb on + strand, within QEN71_RS24035at 5350.863 kb on + strand, within QEN71_RS24035at 5350.863 kb on + strand, within QEN71_RS24035at 5350.863 kb on + strand, within QEN71_RS24035at 5350.863 kb on + strand, within QEN71_RS24035at 5350.863 kb on + strand, within QEN71_RS24035at 5350.863 kb on + strand, within QEN71_RS24035at 5350.863 kb on + strand, within QEN71_RS24035at 5350.863 kb on + strand, within QEN71_RS24035at 5350.863 kb on + strand, within QEN71_RS24035at 5350.864 kb on - strand, within QEN71_RS24035at 5350.864 kb on - strand, within QEN71_RS24035at 5350.864 kb on - strand, within QEN71_RS24035at 5350.864 kb on - strand, within QEN71_RS24035at 5350.944 kb on + strand, within QEN71_RS24035at 5350.944 kb on + strand, within QEN71_RS24035at 5350.944 kb on + strand, within QEN71_RS24035at 5350.944 kb on + strand, within QEN71_RS24035at 5350.944 kb on + strand, within QEN71_RS24035at 5350.944 kb on + strand, within QEN71_RS24035at 5350.944 kb on + strand, within QEN71_RS24035at 5350.945 kb on - strand, within QEN71_RS24035at 5350.945 kb on - strand, within QEN71_RS24035at 5350.945 kb on - strand, within QEN71_RS24035at 5350.945 kb on - strand, within QEN71_RS24035at 5350.945 kb on - strand, within QEN71_RS24035at 5350.979 kb on + strand, within QEN71_RS24035at 5350.980 kb on - strand, within QEN71_RS24035at 5351.031 kb on + strand, within QEN71_RS24035at 5351.032 kb on - strand, within QEN71_RS24035at 5351.067 kb on + strand, within QEN71_RS24035at 5351.067 kb on + strand, within QEN71_RS24035at 5351.067 kb on + strand, within QEN71_RS24035at 5351.068 kb on - strand, within QEN71_RS24035at 5351.068 kb on - strand, within QEN71_RS24035at 5351.068 kb on - strand, within QEN71_RS24035at 5351.132 kb on + strand, within QEN71_RS24035at 5351.132 kb on + strand, within QEN71_RS24035at 5351.132 kb on + strand, within QEN71_RS24035at 5351.132 kb on + strand, within QEN71_RS24035at 5351.132 kb on + strand, within QEN71_RS24035at 5351.132 kb on + strand, within QEN71_RS24035at 5351.133 kb on - strand, within QEN71_RS24035at 5351.133 kb on - strand, within QEN71_RS24035at 5351.133 kb on - strand, within QEN71_RS24035at 5351.133 kb on - strand, within QEN71_RS24035at 5351.133 kb on - strand, within QEN71_RS24035at 5351.133 kb on - strand, within QEN71_RS24035at 5351.133 kb on - strand, within QEN71_RS24035at 5351.280 kb on + strand, within QEN71_RS24035at 5351.372 kb on + strand, within QEN71_RS24035at 5351.373 kb on + strand, within QEN71_RS24035at 5351.373 kb on + strand, within QEN71_RS24035at 5351.373 kb on + strand, within QEN71_RS24035at 5351.373 kb on + strand, within QEN71_RS24035at 5351.373 kb on + strand, within QEN71_RS24035at 5351.373 kb on + strand, within QEN71_RS24035at 5351.373 kb on + strand, within QEN71_RS24035at 5351.374 kb on - strand, within QEN71_RS24035at 5351.374 kb on - strand, within QEN71_RS24035at 5351.374 kb on - strand, within QEN71_RS24035at 5351.374 kb on - strand, within QEN71_RS24035at 5351.374 kb on - strand, within QEN71_RS24035at 5351.374 kb on - strand, within QEN71_RS24035at 5351.385 kb on + strand, within QEN71_RS24035at 5351.430 kb on + strand, within QEN71_RS24035at 5351.431 kb on - strand, within QEN71_RS24035at 5351.431 kb on - strand, within QEN71_RS24035at 5351.431 kb on - strand, within QEN71_RS24035at 5351.439 kb on + strand, within QEN71_RS24035at 5351.439 kb on + strand, within QEN71_RS24035at 5351.439 kb on + strand, within QEN71_RS24035at 5351.440 kb on - strand, within QEN71_RS24035at 5351.440 kb on - strand, within QEN71_RS24035at 5351.440 kb on - strand, within QEN71_RS24035at 5351.440 kb on - strand, within QEN71_RS24035at 5351.660 kb on - strandat 5351.660 kb on - strandat 5351.660 kb on - strandat 5351.660 kb on - strandat 5351.718 kb on - strandat 5351.719 kb on + strandat 5351.719 kb on + strandat 5351.719 kb on + strandat 5351.719 kb on + strandat 5351.719 kb on + strandat 5351.720 kb on - strandat 5351.834 kb on + strand, within QEN71_RS24040at 5351.834 kb on + strand, within QEN71_RS24040at 5351.835 kb on - strand, within QEN71_RS24040at 5351.835 kb on - strand, within QEN71_RS24040at 5351.835 kb on - strand, within QEN71_RS24040at 5351.890 kb on + strand, within QEN71_RS24040at 5351.891 kb on - strand, within QEN71_RS24040at 5351.891 kb on - strand, within QEN71_RS24040at 5351.989 kb on + strand, within QEN71_RS24040at 5352.133 kb on + strand, within QEN71_RS24040at 5352.133 kb on + strand, within QEN71_RS24040at 5352.133 kb on + strand, within QEN71_RS24040at 5352.133 kb on + strand, within QEN71_RS24040at 5352.133 kb on + strand, within QEN71_RS24040at 5352.134 kb on - strand, within QEN71_RS24040at 5352.134 kb on - strand, within QEN71_RS24040at 5352.134 kb on - strand, within QEN71_RS24040at 5352.134 kb on - strand, within QEN71_RS24040at 5352.134 kb on - strand, within QEN71_RS24040at 5352.134 kb on - strand, within QEN71_RS24040at 5352.134 kb on - strand, within QEN71_RS24040at 5352.134 kb on - strand, within QEN71_RS24040at 5352.134 kb on - strand, within QEN71_RS24040at 5352.134 kb on - strand, within QEN71_RS24040at 5352.134 kb on - strand, within QEN71_RS24040at 5352.134 kb on - strand, within QEN71_RS24040

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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5,349,722 + -1.4
5,349,722 + -0.6
5,349,722 + -0.5
5,349,722 + -0.4
5,349,723 - +0.6
5,349,723 - -1.5
5,349,723 - +0.1
5,349,723 - -0.6
5,349,723 - +0.0
5,349,723 - -1.0
5,349,742 + +0.7
5,349,769 + +0.6
5,349,769 + -1.0
5,349,769 + -0.2
5,349,769 + +0.2
5,349,769 + -1.0
5,349,770 - -0.1
5,349,770 - -0.3
5,349,770 - -0.5
5,349,770 - +0.1
5,349,770 - +0.1
5,349,770 - -1.4
5,349,770 - +0.2
5,349,796 + +0.4
5,349,796 + -0.9
5,349,796 + -0.2
5,349,796 + -0.1
5,349,796 + -1.0
5,349,796 + -0.5
5,349,796 + -0.2
5,349,797 - -1.5
5,349,804 + QEN71_RS24030 0.11 -0.4
5,349,804 + QEN71_RS24030 0.11 +1.1
5,349,804 + QEN71_RS24030 0.11 +1.8
5,349,804 + QEN71_RS24030 0.11 +1.7
5,349,804 + QEN71_RS24030 0.11 +1.9
5,349,995 - QEN71_RS24030 0.37 +1.9
5,350,398 + -0.2
5,350,398 + -1.1
5,350,398 + -0.8
5,350,398 + +2.0
5,350,399 - -0.2
5,350,399 - +0.3
5,350,399 - -0.9
5,350,399 - +0.1
5,350,399 - -0.4
5,350,417 + +0.6
5,350,418 - -0.6
5,350,418 - -0.4
5,350,418 - -1.3
5,350,447 + +0.1
5,350,447 + -0.7
5,350,448 - -1.4
5,350,527 + +0.2
5,350,527 + -0.2
5,350,528 - -1.0
5,350,528 - -0.4
5,350,701 + QEN71_RS24035 0.20 -0.1
5,350,701 + QEN71_RS24035 0.20 +0.5
5,350,701 + QEN71_RS24035 0.20 -0.5
5,350,701 + QEN71_RS24035 0.20 +0.0
5,350,701 + QEN71_RS24035 0.20 -1.3
5,350,701 + QEN71_RS24035 0.20 -0.1
5,350,701 + QEN71_RS24035 0.20 +0.7
5,350,701 + QEN71_RS24035 0.20 -1.6
5,350,701 + QEN71_RS24035 0.20 +0.2
5,350,701 + QEN71_RS24035 0.20 -1.1
5,350,701 + QEN71_RS24035 0.20 -0.3
5,350,701 + QEN71_RS24035 0.20 -0.7
5,350,701 + QEN71_RS24035 0.20 -1.1
5,350,702 - QEN71_RS24035 0.20 -0.7
5,350,702 - QEN71_RS24035 0.20 +1.9
5,350,702 - QEN71_RS24035 0.20 +0.6
5,350,702 - QEN71_RS24035 0.20 -1.2
5,350,702 - QEN71_RS24035 0.20 +0.6
5,350,770 + QEN71_RS24035 0.26 -0.3
5,350,863 + QEN71_RS24035 0.34 -0.1
5,350,863 + QEN71_RS24035 0.34 -0.9
5,350,863 + QEN71_RS24035 0.34 -0.3
5,350,863 + QEN71_RS24035 0.34 +1.0
5,350,863 + QEN71_RS24035 0.34 -0.1
5,350,863 + QEN71_RS24035 0.34 -0.1
5,350,863 + QEN71_RS24035 0.34 -0.7
5,350,863 + QEN71_RS24035 0.34 +0.1
5,350,863 + QEN71_RS24035 0.34 +0.6
5,350,863 + QEN71_RS24035 0.34 -1.5
5,350,864 - QEN71_RS24035 0.35 +0.4
5,350,864 - QEN71_RS24035 0.35 +0.0
5,350,864 - QEN71_RS24035 0.35 +0.0
5,350,864 - QEN71_RS24035 0.35 -0.9
5,350,944 + QEN71_RS24035 0.42 +0.6
5,350,944 + QEN71_RS24035 0.42 +0.6
5,350,944 + QEN71_RS24035 0.42 -0.4
5,350,944 + QEN71_RS24035 0.42 +0.1
5,350,944 + QEN71_RS24035 0.42 +1.0
5,350,944 + QEN71_RS24035 0.42 -2.4
5,350,944 + QEN71_RS24035 0.42 -0.0
5,350,945 - QEN71_RS24035 0.42 -0.7
5,350,945 - QEN71_RS24035 0.42 -0.7
5,350,945 - QEN71_RS24035 0.42 -0.7
5,350,945 - QEN71_RS24035 0.42 -0.2
5,350,945 - QEN71_RS24035 0.42 +0.2
5,350,979 + QEN71_RS24035 0.45 +0.0
5,350,980 - QEN71_RS24035 0.45 -0.2
5,351,031 + QEN71_RS24035 0.50 -0.3
5,351,032 - QEN71_RS24035 0.50 -0.8
5,351,067 + QEN71_RS24035 0.53 -0.5
5,351,067 + QEN71_RS24035 0.53 +1.3
5,351,067 + QEN71_RS24035 0.53 -0.5
5,351,068 - QEN71_RS24035 0.53 -1.8
5,351,068 - QEN71_RS24035 0.53 -0.1
5,351,068 - QEN71_RS24035 0.53 -0.5
5,351,132 + QEN71_RS24035 0.59 +0.2
5,351,132 + QEN71_RS24035 0.59 -0.8
5,351,132 + QEN71_RS24035 0.59 +0.0
5,351,132 + QEN71_RS24035 0.59 -0.2
5,351,132 + QEN71_RS24035 0.59 +0.0
5,351,132 + QEN71_RS24035 0.59 +0.2
5,351,133 - QEN71_RS24035 0.59 -1.2
5,351,133 - QEN71_RS24035 0.59 -0.5
5,351,133 - QEN71_RS24035 0.59 +1.0
5,351,133 - QEN71_RS24035 0.59 -0.1
5,351,133 - QEN71_RS24035 0.59 -0.1
5,351,133 - QEN71_RS24035 0.59 -0.4
5,351,133 - QEN71_RS24035 0.59 -0.9
5,351,280 + QEN71_RS24035 0.72 -0.3
5,351,372 + QEN71_RS24035 0.80 -0.9
5,351,373 + QEN71_RS24035 0.80 +0.5
5,351,373 + QEN71_RS24035 0.80 -1.1
5,351,373 + QEN71_RS24035 0.80 -1.0
5,351,373 + QEN71_RS24035 0.80 +1.0
5,351,373 + QEN71_RS24035 0.80 +0.2
5,351,373 + QEN71_RS24035 0.80 -0.5
5,351,373 + QEN71_RS24035 0.80 +0.8
5,351,374 - QEN71_RS24035 0.81 -0.0
5,351,374 - QEN71_RS24035 0.81 +0.2
5,351,374 - QEN71_RS24035 0.81 +0.6
5,351,374 - QEN71_RS24035 0.81 +0.9
5,351,374 - QEN71_RS24035 0.81 -0.7
5,351,374 - QEN71_RS24035 0.81 -0.0
5,351,385 + QEN71_RS24035 0.82 +0.3
5,351,430 + QEN71_RS24035 0.86 -0.9
5,351,431 - QEN71_RS24035 0.86 -0.3
5,351,431 - QEN71_RS24035 0.86 -1.6
5,351,431 - QEN71_RS24035 0.86 -1.3
5,351,439 + QEN71_RS24035 0.86 -1.4
5,351,439 + QEN71_RS24035 0.86 -0.7
5,351,439 + QEN71_RS24035 0.86 +0.5
5,351,440 - QEN71_RS24035 0.87 -1.9
5,351,440 - QEN71_RS24035 0.87 -0.1
5,351,440 - QEN71_RS24035 0.87 +0.4
5,351,440 - QEN71_RS24035 0.87 -0.2
5,351,660 - -0.1
5,351,660 - -1.6
5,351,660 - -0.7
5,351,660 - -0.3
5,351,718 - -0.6
5,351,719 + -0.0
5,351,719 + -2.5
5,351,719 + +0.8
5,351,719 + -0.7
5,351,719 + +0.9
5,351,720 - -1.0
5,351,834 + QEN71_RS24040 0.15 -1.6
5,351,834 + QEN71_RS24040 0.15 -0.5
5,351,835 - QEN71_RS24040 0.15 +0.0
5,351,835 - QEN71_RS24040 0.15 +0.4
5,351,835 - QEN71_RS24040 0.15 -0.9
5,351,890 + QEN71_RS24040 0.20 -0.2
5,351,891 - QEN71_RS24040 0.20 -0.1
5,351,891 - QEN71_RS24040 0.20 -0.2
5,351,989 + QEN71_RS24040 0.28 -1.8
5,352,133 + QEN71_RS24040 0.40 +0.2
5,352,133 + QEN71_RS24040 0.40 +1.7
5,352,133 + QEN71_RS24040 0.40 +1.1
5,352,133 + QEN71_RS24040 0.40 -0.1
5,352,133 + QEN71_RS24040 0.40 -1.6
5,352,134 - QEN71_RS24040 0.40 +0.1
5,352,134 - QEN71_RS24040 0.40 +0.5
5,352,134 - QEN71_RS24040 0.40 +1.5
5,352,134 - QEN71_RS24040 0.40 -0.4
5,352,134 - QEN71_RS24040 0.40 -0.3
5,352,134 - QEN71_RS24040 0.40 -0.3
5,352,134 - QEN71_RS24040 0.40 -1.5
5,352,134 - QEN71_RS24040 0.40 +0.1
5,352,134 - QEN71_RS24040 0.40 -0.9
5,352,134 - QEN71_RS24040 0.40 +0.1
5,352,134 - QEN71_RS24040 0.40 +0.4
5,352,134 - QEN71_RS24040 0.40 -0.3

Or see this region's nucleotide sequence