Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS21040

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS21030 and QEN71_RS21035 are separated by 111 nucleotidesQEN71_RS21035 and QEN71_RS21040 are separated by 134 nucleotidesQEN71_RS21040 and QEN71_RS21045 are separated by 211 nucleotidesQEN71_RS21045 and QEN71_RS21050 are separated by 106 nucleotides QEN71_RS21030: QEN71_RS21030 - trifunctional serine/threonine-protein kinase/ATP-binding protein/sensor histidine kinase, at 4,662,406 to 4,667,502 _RS21030 QEN71_RS21035: QEN71_RS21035 - response regulator, at 4,667,614 to 4,668,276 _RS21035 QEN71_RS21040: QEN71_RS21040 - response regulator, at 4,668,411 to 4,668,794 _RS21040 QEN71_RS21045: QEN71_RS21045 - BON domain-containing protein, at 4,669,006 to 4,669,395 _RS21045 QEN71_RS21050: QEN71_RS21050 - DUF3331 domain-containing protein, at 4,669,502 to 4,669,951 _RS21050 Position (kb) 4668 4669Strain fitness (log2 ratio) -2 -1 0 1 2at 4667.490 kb on + strandat 4667.490 kb on + strandat 4667.491 kb on - strandat 4667.491 kb on - strandat 4667.498 kb on + strandat 4667.498 kb on + strandat 4667.499 kb on - strandat 4667.671 kb on + strandat 4667.671 kb on + strandat 4667.672 kb on - strandat 4667.672 kb on - strandat 4667.880 kb on + strand, within QEN71_RS21035at 4667.881 kb on - strand, within QEN71_RS21035at 4667.881 kb on - strand, within QEN71_RS21035at 4667.881 kb on - strand, within QEN71_RS21035at 4668.311 kb on + strandat 4668.312 kb on - strandat 4668.312 kb on - strandat 4668.313 kb on + strandat 4668.313 kb on + strandat 4668.314 kb on - strandat 4668.314 kb on - strandat 4668.314 kb on - strandat 4668.314 kb on - strandat 4668.314 kb on - strandat 4668.321 kb on + strandat 4668.321 kb on + strandat 4668.321 kb on + strandat 4668.322 kb on - strandat 4668.322 kb on - strandat 4668.322 kb on - strandat 4668.439 kb on + strandat 4668.439 kb on + strandat 4668.440 kb on - strandat 4668.663 kb on + strand, within QEN71_RS21040at 4668.663 kb on + strand, within QEN71_RS21040at 4668.664 kb on - strand, within QEN71_RS21040at 4668.664 kb on - strand, within QEN71_RS21040at 4668.664 kb on - strand, within QEN71_RS21040at 4668.916 kb on + strandat 4668.916 kb on + strandat 4668.917 kb on - strandat 4668.931 kb on + strandat 4669.471 kb on + strandat 4669.472 kb on - strandat 4669.473 kb on + strandat 4669.473 kb on + strandat 4669.473 kb on + strandat 4669.496 kb on - strandat 4669.496 kb on - strandat 4669.521 kb on + strandat 4669.521 kb on + strandat 4669.534 kb on + strandat 4669.687 kb on + strand, within QEN71_RS21050at 4669.688 kb on - strand, within QEN71_RS21050at 4669.771 kb on - strand, within QEN71_RS21050

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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4,667,490 + -0.5
4,667,490 + -0.1
4,667,491 - -0.7
4,667,491 - -0.1
4,667,498 + -0.4
4,667,498 + -0.5
4,667,499 - +0.1
4,667,671 + +0.4
4,667,671 + +1.0
4,667,672 - -0.5
4,667,672 - +0.2
4,667,880 + QEN71_RS21035 0.40 +0.4
4,667,881 - QEN71_RS21035 0.40 -1.2
4,667,881 - QEN71_RS21035 0.40 -0.9
4,667,881 - QEN71_RS21035 0.40 -1.9
4,668,311 + +1.8
4,668,312 - -0.2
4,668,312 - -1.2
4,668,313 + -0.1
4,668,313 + -0.6
4,668,314 - +0.2
4,668,314 - -1.2
4,668,314 - +0.5
4,668,314 - -0.1
4,668,314 - +0.3
4,668,321 + +0.5
4,668,321 + +0.4
4,668,321 + +0.1
4,668,322 - +0.5
4,668,322 - -0.4
4,668,322 - -0.9
4,668,439 + -1.3
4,668,439 + +0.7
4,668,440 - +0.8
4,668,663 + QEN71_RS21040 0.66 +0.1
4,668,663 + QEN71_RS21040 0.66 +0.6
4,668,664 - QEN71_RS21040 0.66 -1.0
4,668,664 - QEN71_RS21040 0.66 +0.5
4,668,664 - QEN71_RS21040 0.66 +0.6
4,668,916 + +0.3
4,668,916 + +0.2
4,668,917 - -1.3
4,668,931 + -0.1
4,669,471 + -0.0
4,669,472 - -0.9
4,669,473 + -1.5
4,669,473 + +0.7
4,669,473 + -0.4
4,669,496 - -0.5
4,669,496 - -0.1
4,669,521 + -1.8
4,669,521 + -0.2
4,669,534 + +0.3
4,669,687 + QEN71_RS21050 0.41 -0.2
4,669,688 - QEN71_RS21050 0.41 -1.5
4,669,771 - QEN71_RS21050 0.60 -0.4

Or see this region's nucleotide sequence