Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS17485

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS17480 and QEN71_RS17485 are separated by 10 nucleotidesQEN71_RS17485 and QEN71_RS17490 are separated by 8 nucleotides QEN71_RS17480: QEN71_RS17480 - Flp pilus assembly protein CpaB, at 3,888,615 to 3,889,601 _RS17480 QEN71_RS17485: QEN71_RS17485 - pilus assembly protein N-terminal domain-containing protein, at 3,889,612 to 3,890,952 _RS17485 QEN71_RS17490: QEN71_RS17490 - ATPase, T2SS/T4P/T4SS family, at 3,890,961 to 3,892,655 _RS17490 Position (kb) 3889 3890 3891Strain fitness (log2 ratio) -2 -1 0 1at 3888.711 kb on + strandat 3889.753 kb on + strand, within QEN71_RS17485at 3889.753 kb on + strand, within QEN71_RS17485at 3889.753 kb on + strand, within QEN71_RS17485at 3890.361 kb on - strand, within QEN71_RS17485at 3890.361 kb on - strand, within QEN71_RS17485at 3890.471 kb on - strand, within QEN71_RS17485at 3890.820 kb on + strandat 3890.863 kb on + strandat 3891.120 kb on + strandat 3891.120 kb on + strandat 3891.120 kb on + strandat 3891.328 kb on + strand, within QEN71_RS17490at 3891.329 kb on - strand, within QEN71_RS17490at 3891.365 kb on + strand, within QEN71_RS17490

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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3,888,711 + -0.3
3,889,753 + QEN71_RS17485 0.11 -2.7
3,889,753 + QEN71_RS17485 0.11 -0.8
3,889,753 + QEN71_RS17485 0.11 -0.8
3,890,361 - QEN71_RS17485 0.56 -0.0
3,890,361 - QEN71_RS17485 0.56 +0.3
3,890,471 - QEN71_RS17485 0.64 -1.2
3,890,820 + +0.9
3,890,863 + -0.1
3,891,120 + -0.1
3,891,120 + -0.5
3,891,120 + -0.7
3,891,328 + QEN71_RS17490 0.22 +0.6
3,891,329 - QEN71_RS17490 0.22 +0.5
3,891,365 + QEN71_RS17490 0.24 -0.3

Or see this region's nucleotide sequence