Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS12365

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS12360 and QEN71_RS12365 are separated by 23 nucleotidesQEN71_RS12365 and QEN71_RS12370 are separated by 10 nucleotidesQEN71_RS12370 and QEN71_RS12375 are separated by 425 nucleotides QEN71_RS12360: QEN71_RS12360 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 2,769,227 to 2,771,455 _RS12360 QEN71_RS12365: QEN71_RS12365 - xanthine dehydrogenase family protein subunit M, at 2,771,479 to 2,772,480 _RS12365 QEN71_RS12370: QEN71_RS12370 - (2Fe-2S)-binding protein, at 2,772,491 to 2,773,036 _RS12370 QEN71_RS12375: QEN71_RS12375 - hypothetical protein, at 2,773,462 to 2,774,436 _RS12375 Position (kb) 2771 2772 2773Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2770.485 kb on + strand, within QEN71_RS12360at 2770.521 kb on + strand, within QEN71_RS12360at 2770.551 kb on + strand, within QEN71_RS12360at 2770.552 kb on - strand, within QEN71_RS12360at 2770.552 kb on - strand, within QEN71_RS12360at 2770.552 kb on - strand, within QEN71_RS12360at 2770.552 kb on - strand, within QEN71_RS12360at 2770.615 kb on + strand, within QEN71_RS12360at 2770.684 kb on + strand, within QEN71_RS12360at 2770.684 kb on + strand, within QEN71_RS12360at 2770.684 kb on + strand, within QEN71_RS12360at 2770.685 kb on - strand, within QEN71_RS12360at 2770.715 kb on - strand, within QEN71_RS12360at 2770.715 kb on - strand, within QEN71_RS12360at 2770.808 kb on + strand, within QEN71_RS12360at 2770.848 kb on + strand, within QEN71_RS12360at 2770.929 kb on + strand, within QEN71_RS12360at 2770.929 kb on + strand, within QEN71_RS12360at 2770.929 kb on + strand, within QEN71_RS12360at 2770.930 kb on - strand, within QEN71_RS12360at 2770.930 kb on - strand, within QEN71_RS12360at 2770.930 kb on - strand, within QEN71_RS12360at 2770.962 kb on + strand, within QEN71_RS12360at 2771.038 kb on - strand, within QEN71_RS12360at 2771.038 kb on - strand, within QEN71_RS12360at 2771.098 kb on + strand, within QEN71_RS12360at 2771.121 kb on + strand, within QEN71_RS12360at 2771.121 kb on + strand, within QEN71_RS12360at 2771.121 kb on + strand, within QEN71_RS12360at 2771.131 kb on - strand, within QEN71_RS12360at 2771.211 kb on + strand, within QEN71_RS12360at 2771.331 kb on + strandat 2771.331 kb on + strandat 2771.331 kb on + strandat 2771.331 kb on + strandat 2771.332 kb on - strandat 2771.332 kb on - strandat 2771.364 kb on + strandat 2771.364 kb on + strandat 2771.365 kb on - strandat 2771.365 kb on - strandat 2771.756 kb on + strand, within QEN71_RS12365at 2771.756 kb on + strand, within QEN71_RS12365at 2771.756 kb on + strand, within QEN71_RS12365at 2771.756 kb on + strand, within QEN71_RS12365at 2771.757 kb on - strand, within QEN71_RS12365at 2771.757 kb on - strand, within QEN71_RS12365at 2771.757 kb on - strand, within QEN71_RS12365at 2771.783 kb on + strand, within QEN71_RS12365at 2771.784 kb on - strand, within QEN71_RS12365at 2771.784 kb on - strand, within QEN71_RS12365at 2771.869 kb on - strand, within QEN71_RS12365at 2771.885 kb on + strand, within QEN71_RS12365at 2771.885 kb on + strand, within QEN71_RS12365at 2771.886 kb on - strand, within QEN71_RS12365at 2771.886 kb on - strand, within QEN71_RS12365at 2771.886 kb on - strand, within QEN71_RS12365at 2771.991 kb on + strand, within QEN71_RS12365at 2771.992 kb on - strand, within QEN71_RS12365at 2772.102 kb on - strand, within QEN71_RS12365at 2772.200 kb on + strand, within QEN71_RS12365at 2772.537 kb on + strandat 2772.652 kb on - strand, within QEN71_RS12370at 2772.664 kb on - strand, within QEN71_RS12370at 2772.915 kb on + strand, within QEN71_RS12370at 2772.915 kb on + strand, within QEN71_RS12370at 2772.916 kb on - strand, within QEN71_RS12370at 2772.916 kb on - strand, within QEN71_RS12370at 2773.164 kb on + strandat 2773.164 kb on + strandat 2773.165 kb on - strandat 2773.165 kb on - strandat 2773.251 kb on + strandat 2773.252 kb on - strandat 2773.420 kb on + strandat 2773.421 kb on - strandat 2773.421 kb on - strandat 2773.472 kb on + strandat 2773.472 kb on + strandat 2773.473 kb on - strandat 2773.473 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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2,770,485 + QEN71_RS12360 0.56 -1.3
2,770,521 + QEN71_RS12360 0.58 -0.2
2,770,551 + QEN71_RS12360 0.59 +1.0
2,770,552 - QEN71_RS12360 0.59 +0.1
2,770,552 - QEN71_RS12360 0.59 -0.4
2,770,552 - QEN71_RS12360 0.59 -0.1
2,770,552 - QEN71_RS12360 0.59 -0.5
2,770,615 + QEN71_RS12360 0.62 -0.3
2,770,684 + QEN71_RS12360 0.65 -1.1
2,770,684 + QEN71_RS12360 0.65 -0.1
2,770,684 + QEN71_RS12360 0.65 -0.3
2,770,685 - QEN71_RS12360 0.65 +0.0
2,770,715 - QEN71_RS12360 0.67 +0.6
2,770,715 - QEN71_RS12360 0.67 -0.7
2,770,808 + QEN71_RS12360 0.71 +0.1
2,770,848 + QEN71_RS12360 0.73 -0.7
2,770,929 + QEN71_RS12360 0.76 -0.1
2,770,929 + QEN71_RS12360 0.76 -0.9
2,770,929 + QEN71_RS12360 0.76 +0.4
2,770,930 - QEN71_RS12360 0.76 +0.6
2,770,930 - QEN71_RS12360 0.76 +0.6
2,770,930 - QEN71_RS12360 0.76 -0.1
2,770,962 + QEN71_RS12360 0.78 +1.9
2,771,038 - QEN71_RS12360 0.81 -0.9
2,771,038 - QEN71_RS12360 0.81 -0.6
2,771,098 + QEN71_RS12360 0.84 -0.6
2,771,121 + QEN71_RS12360 0.85 -0.1
2,771,121 + QEN71_RS12360 0.85 -1.2
2,771,121 + QEN71_RS12360 0.85 -0.0
2,771,131 - QEN71_RS12360 0.85 -0.4
2,771,211 + QEN71_RS12360 0.89 -1.0
2,771,331 + +0.6
2,771,331 + +0.6
2,771,331 + -0.5
2,771,331 + -0.1
2,771,332 - +0.7
2,771,332 - -0.5
2,771,364 + -0.1
2,771,364 + +0.2
2,771,365 - +0.1
2,771,365 - -0.4
2,771,756 + QEN71_RS12365 0.28 -1.0
2,771,756 + QEN71_RS12365 0.28 -1.4
2,771,756 + QEN71_RS12365 0.28 +0.0
2,771,756 + QEN71_RS12365 0.28 +0.3
2,771,757 - QEN71_RS12365 0.28 -1.0
2,771,757 - QEN71_RS12365 0.28 -0.8
2,771,757 - QEN71_RS12365 0.28 -0.1
2,771,783 + QEN71_RS12365 0.30 +0.0
2,771,784 - QEN71_RS12365 0.30 -1.3
2,771,784 - QEN71_RS12365 0.30 -0.4
2,771,869 - QEN71_RS12365 0.39 +1.0
2,771,885 + QEN71_RS12365 0.41 -0.4
2,771,885 + QEN71_RS12365 0.41 +0.4
2,771,886 - QEN71_RS12365 0.41 -0.4
2,771,886 - QEN71_RS12365 0.41 +0.2
2,771,886 - QEN71_RS12365 0.41 -0.8
2,771,991 + QEN71_RS12365 0.51 -3.1
2,771,992 - QEN71_RS12365 0.51 -0.4
2,772,102 - QEN71_RS12365 0.62 -1.9
2,772,200 + QEN71_RS12365 0.72 -0.3
2,772,537 + +1.1
2,772,652 - QEN71_RS12370 0.29 +0.3
2,772,664 - QEN71_RS12370 0.32 -0.2
2,772,915 + QEN71_RS12370 0.78 -1.1
2,772,915 + QEN71_RS12370 0.78 +0.2
2,772,916 - QEN71_RS12370 0.78 +0.0
2,772,916 - QEN71_RS12370 0.78 +0.5
2,773,164 + -0.5
2,773,164 + -1.6
2,773,165 - +0.4
2,773,165 - -0.7
2,773,251 + -0.5
2,773,252 - -0.4
2,773,420 + -1.4
2,773,421 - -0.3
2,773,421 - -0.1
2,773,472 + +0.9
2,773,472 + -1.2
2,773,473 - -0.3
2,773,473 - -1.0

Or see this region's nucleotide sequence