Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS07315

Experiment: D-Fructose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS07305 and QEN71_RS07310 are separated by 142 nucleotidesQEN71_RS07310 and QEN71_RS07315 are separated by 148 nucleotidesQEN71_RS07315 and QEN71_RS07320 are separated by 19 nucleotidesQEN71_RS07320 and QEN71_RS07325 are separated by 89 nucleotides QEN71_RS07305: QEN71_RS07305 - saccharopine dehydrogenase NADP-binding domain-containing protein, at 1,624,359 to 1,625,456 _RS07305 QEN71_RS07310: QEN71_RS07310 - ATP-binding protein, at 1,625,599 to 1,626,219 _RS07310 QEN71_RS07315: QEN71_RS07315 - DNA-binding protein, at 1,626,368 to 1,626,613 _RS07315 QEN71_RS07320: QEN71_RS07320 - type II toxin-antitoxin system VapC family toxin, at 1,626,633 to 1,627,028 _RS07320 QEN71_RS07325: QEN71_RS07325 - hypothetical protein, at 1,627,118 to 1,627,573 _RS07325 Position (kb) 1626 1627Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1625.418 kb on + strandat 1625.418 kb on + strandat 1625.418 kb on + strandat 1625.418 kb on + strandat 1625.419 kb on - strandat 1625.419 kb on - strandat 1625.511 kb on + strandat 1625.511 kb on + strandat 1625.511 kb on + strandat 1625.538 kb on + strandat 1625.582 kb on + strandat 1625.582 kb on + strandat 1625.582 kb on + strandat 1625.582 kb on + strandat 1625.583 kb on - strandat 1625.600 kb on + strandat 1625.756 kb on + strand, within QEN71_RS07310at 1625.780 kb on + strand, within QEN71_RS07310at 1625.780 kb on + strand, within QEN71_RS07310at 1625.780 kb on + strand, within QEN71_RS07310at 1625.780 kb on + strand, within QEN71_RS07310at 1625.780 kb on + strand, within QEN71_RS07310at 1625.780 kb on + strand, within QEN71_RS07310at 1625.780 kb on + strand, within QEN71_RS07310at 1625.781 kb on - strand, within QEN71_RS07310at 1625.781 kb on - strand, within QEN71_RS07310at 1625.781 kb on - strand, within QEN71_RS07310at 1625.980 kb on - strand, within QEN71_RS07310at 1625.997 kb on - strand, within QEN71_RS07310at 1625.997 kb on - strand, within QEN71_RS07310at 1626.081 kb on + strand, within QEN71_RS07310at 1626.081 kb on + strand, within QEN71_RS07310at 1626.081 kb on + strand, within QEN71_RS07310at 1626.082 kb on - strand, within QEN71_RS07310at 1626.082 kb on - strand, within QEN71_RS07310at 1626.083 kb on + strand, within QEN71_RS07310at 1626.083 kb on + strand, within QEN71_RS07310at 1626.083 kb on + strand, within QEN71_RS07310at 1626.083 kb on + strand, within QEN71_RS07310at 1626.083 kb on + strand, within QEN71_RS07310at 1626.083 kb on + strand, within QEN71_RS07310at 1626.083 kb on + strand, within QEN71_RS07310at 1626.083 kb on + strand, within QEN71_RS07310at 1626.084 kb on - strand, within QEN71_RS07310at 1626.084 kb on - strand, within QEN71_RS07310at 1626.084 kb on - strand, within QEN71_RS07310at 1626.084 kb on - strand, within QEN71_RS07310at 1626.084 kb on - strand, within QEN71_RS07310at 1626.084 kb on - strand, within QEN71_RS07310at 1626.084 kb on - strand, within QEN71_RS07310at 1626.093 kb on - strand, within QEN71_RS07310at 1626.093 kb on - strand, within QEN71_RS07310at 1626.093 kb on - strand, within QEN71_RS07310at 1626.202 kb on - strandat 1626.202 kb on - strandat 1626.202 kb on - strandat 1626.294 kb on + strandat 1626.294 kb on + strandat 1626.294 kb on + strandat 1626.294 kb on + strandat 1626.295 kb on - strandat 1626.295 kb on - strandat 1626.295 kb on - strandat 1626.295 kb on - strandat 1626.334 kb on - strandat 1626.342 kb on + strandat 1626.353 kb on + strandat 1626.353 kb on + strandat 1626.353 kb on + strandat 1626.585 kb on + strand, within QEN71_RS07315at 1626.585 kb on + strand, within QEN71_RS07315at 1626.585 kb on + strand, within QEN71_RS07315at 1626.585 kb on + strand, within QEN71_RS07315at 1626.585 kb on + strand, within QEN71_RS07315at 1626.585 kb on + strand, within QEN71_RS07315at 1626.586 kb on - strand, within QEN71_RS07315at 1626.586 kb on - strand, within QEN71_RS07315at 1626.586 kb on - strand, within QEN71_RS07315at 1626.586 kb on - strand, within QEN71_RS07315at 1626.586 kb on - strand, within QEN71_RS07315at 1626.603 kb on + strandat 1626.603 kb on + strandat 1626.603 kb on + strandat 1626.603 kb on + strandat 1626.603 kb on + strandat 1626.603 kb on + strandat 1626.603 kb on + strandat 1626.603 kb on + strandat 1626.604 kb on - strandat 1626.604 kb on - strandat 1626.613 kb on + strandat 1626.614 kb on + strandat 1626.615 kb on - strandat 1626.615 kb on - strandat 1626.615 kb on - strandat 1626.622 kb on + strandat 1626.622 kb on + strandat 1626.622 kb on + strandat 1626.622 kb on + strandat 1626.622 kb on + strandat 1626.622 kb on + strandat 1626.622 kb on + strandat 1626.622 kb on + strandat 1626.622 kb on + strandat 1626.623 kb on - strandat 1626.623 kb on - strandat 1626.623 kb on - strandat 1626.623 kb on - strandat 1626.623 kb on - strandat 1626.623 kb on - strandat 1626.708 kb on + strand, within QEN71_RS07320at 1626.708 kb on + strand, within QEN71_RS07320at 1626.708 kb on + strand, within QEN71_RS07320at 1626.708 kb on + strand, within QEN71_RS07320at 1626.708 kb on + strand, within QEN71_RS07320at 1626.708 kb on + strand, within QEN71_RS07320at 1626.708 kb on + strand, within QEN71_RS07320at 1626.708 kb on + strand, within QEN71_RS07320at 1626.708 kb on + strand, within QEN71_RS07320at 1626.708 kb on + strand, within QEN71_RS07320at 1626.709 kb on - strand, within QEN71_RS07320at 1626.709 kb on - strand, within QEN71_RS07320at 1626.709 kb on - strand, within QEN71_RS07320at 1626.709 kb on - strand, within QEN71_RS07320at 1626.709 kb on - strand, within QEN71_RS07320at 1626.709 kb on - strand, within QEN71_RS07320at 1626.709 kb on - strand, within QEN71_RS07320at 1626.712 kb on + strand, within QEN71_RS07320at 1626.712 kb on + strand, within QEN71_RS07320at 1626.712 kb on + strand, within QEN71_RS07320at 1626.712 kb on + strand, within QEN71_RS07320at 1626.712 kb on + strand, within QEN71_RS07320at 1626.713 kb on - strand, within QEN71_RS07320at 1626.713 kb on - strand, within QEN71_RS07320at 1626.713 kb on - strand, within QEN71_RS07320at 1626.713 kb on - strand, within QEN71_RS07320at 1626.939 kb on + strand, within QEN71_RS07320at 1626.939 kb on + strand, within QEN71_RS07320at 1626.939 kb on + strand, within QEN71_RS07320at 1626.939 kb on + strand, within QEN71_RS07320at 1626.939 kb on + strand, within QEN71_RS07320at 1626.940 kb on - strand, within QEN71_RS07320at 1626.940 kb on - strand, within QEN71_RS07320at 1626.940 kb on - strand, within QEN71_RS07320at 1626.940 kb on - strand, within QEN71_RS07320at 1626.940 kb on - strand, within QEN71_RS07320at 1626.940 kb on - strand, within QEN71_RS07320at 1626.940 kb on - strand, within QEN71_RS07320at 1626.940 kb on - strand, within QEN71_RS07320at 1626.940 kb on - strand, within QEN71_RS07320at 1627.049 kb on + strandat 1627.096 kb on + strandat 1627.096 kb on + strandat 1627.097 kb on - strandat 1627.126 kb on + strandat 1627.126 kb on + strandat 1627.126 kb on + strandat 1627.126 kb on + strandat 1627.126 kb on + strandat 1627.127 kb on - strandat 1627.127 kb on - strandat 1627.155 kb on + strandat 1627.156 kb on - strandat 1627.163 kb on - strandat 1627.271 kb on + strand, within QEN71_RS07325at 1627.272 kb on - strand, within QEN71_RS07325at 1627.272 kb on - strand, within QEN71_RS07325at 1627.273 kb on + strand, within QEN71_RS07325at 1627.273 kb on + strand, within QEN71_RS07325at 1627.274 kb on - strand, within QEN71_RS07325at 1627.274 kb on - strand, within QEN71_RS07325at 1627.274 kb on - strand, within QEN71_RS07325at 1627.274 kb on - strand, within QEN71_RS07325at 1627.274 kb on - strand, within QEN71_RS07325at 1627.361 kb on + strand, within QEN71_RS07325at 1627.361 kb on + strand, within QEN71_RS07325at 1627.361 kb on + strand, within QEN71_RS07325at 1627.361 kb on + strand, within QEN71_RS07325at 1627.361 kb on + strand, within QEN71_RS07325at 1627.361 kb on + strand, within QEN71_RS07325at 1627.361 kb on + strand, within QEN71_RS07325at 1627.362 kb on - strand, within QEN71_RS07325at 1627.362 kb on - strand, within QEN71_RS07325at 1627.362 kb on - strand, within QEN71_RS07325at 1627.362 kb on - strand, within QEN71_RS07325at 1627.362 kb on - strand, within QEN71_RS07325at 1627.362 kb on - strand, within QEN71_RS07325at 1627.362 kb on - strand, within QEN71_RS07325at 1627.362 kb on - strand, within QEN71_RS07325at 1627.505 kb on + strand, within QEN71_RS07325at 1627.506 kb on - strand, within QEN71_RS07325at 1627.571 kb on + strandat 1627.572 kb on - strandat 1627.572 kb on - strandat 1627.572 kb on - strandat 1627.572 kb on - strandat 1627.572 kb on - strandat 1627.613 kb on + strandat 1627.613 kb on + strandat 1627.613 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
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1,625,418 + -2.6
1,625,418 + -0.8
1,625,418 + +0.9
1,625,418 + +1.2
1,625,419 - -0.4
1,625,419 - -0.1
1,625,511 + -2.6
1,625,511 + +0.2
1,625,511 + +0.4
1,625,538 + -0.1
1,625,582 + -1.3
1,625,582 + +1.3
1,625,582 + +0.6
1,625,582 + -0.0
1,625,583 - +0.1
1,625,600 + -0.7
1,625,756 + QEN71_RS07310 0.25 -0.5
1,625,780 + QEN71_RS07310 0.29 -0.8
1,625,780 + QEN71_RS07310 0.29 -1.3
1,625,780 + QEN71_RS07310 0.29 -1.0
1,625,780 + QEN71_RS07310 0.29 -0.2
1,625,780 + QEN71_RS07310 0.29 -0.3
1,625,780 + QEN71_RS07310 0.29 -0.1
1,625,780 + QEN71_RS07310 0.29 -0.2
1,625,781 - QEN71_RS07310 0.29 +0.3
1,625,781 - QEN71_RS07310 0.29 -1.9
1,625,781 - QEN71_RS07310 0.29 -0.1
1,625,980 - QEN71_RS07310 0.61 +0.2
1,625,997 - QEN71_RS07310 0.64 -0.2
1,625,997 - QEN71_RS07310 0.64 -0.7
1,626,081 + QEN71_RS07310 0.78 +0.4
1,626,081 + QEN71_RS07310 0.78 -0.2
1,626,081 + QEN71_RS07310 0.78 +0.0
1,626,082 - QEN71_RS07310 0.78 -0.4
1,626,082 - QEN71_RS07310 0.78 -0.0
1,626,083 + QEN71_RS07310 0.78 +0.7
1,626,083 + QEN71_RS07310 0.78 +0.1
1,626,083 + QEN71_RS07310 0.78 -0.0
1,626,083 + QEN71_RS07310 0.78 -0.1
1,626,083 + QEN71_RS07310 0.78 -0.6
1,626,083 + QEN71_RS07310 0.78 -1.3
1,626,083 + QEN71_RS07310 0.78 +0.6
1,626,083 + QEN71_RS07310 0.78 +0.2
1,626,084 - QEN71_RS07310 0.78 +0.0
1,626,084 - QEN71_RS07310 0.78 +0.4
1,626,084 - QEN71_RS07310 0.78 +1.0
1,626,084 - QEN71_RS07310 0.78 +0.4
1,626,084 - QEN71_RS07310 0.78 +0.3
1,626,084 - QEN71_RS07310 0.78 +0.6
1,626,084 - QEN71_RS07310 0.78 -0.6
1,626,093 - QEN71_RS07310 0.80 +0.3
1,626,093 - QEN71_RS07310 0.80 -0.1
1,626,093 - QEN71_RS07310 0.80 +0.4
1,626,202 - +0.4
1,626,202 - +0.6
1,626,202 - +0.2
1,626,294 + +0.0
1,626,294 + -0.2
1,626,294 + +0.4
1,626,294 + -0.3
1,626,295 - +1.2
1,626,295 - -0.2
1,626,295 - +0.5
1,626,295 - +0.5
1,626,334 - -1.3
1,626,342 + +0.2
1,626,353 + +0.9
1,626,353 + +0.3
1,626,353 + +0.3
1,626,585 + QEN71_RS07315 0.88 -0.3
1,626,585 + QEN71_RS07315 0.88 -1.0
1,626,585 + QEN71_RS07315 0.88 +0.2
1,626,585 + QEN71_RS07315 0.88 -0.9
1,626,585 + QEN71_RS07315 0.88 -0.5
1,626,585 + QEN71_RS07315 0.88 -0.4
1,626,586 - QEN71_RS07315 0.89 -0.1
1,626,586 - QEN71_RS07315 0.89 +0.4
1,626,586 - QEN71_RS07315 0.89 -1.9
1,626,586 - QEN71_RS07315 0.89 +0.2
1,626,586 - QEN71_RS07315 0.89 -0.6
1,626,603 + -1.0
1,626,603 + +0.8
1,626,603 + +1.7
1,626,603 + -1.1
1,626,603 + -1.9
1,626,603 + -0.1
1,626,603 + -1.3
1,626,603 + +0.3
1,626,604 - +0.3
1,626,604 - -0.1
1,626,613 + +0.2
1,626,614 + +0.8
1,626,615 - -0.7
1,626,615 - +0.2
1,626,615 - -0.3
1,626,622 + -0.4
1,626,622 + +0.8
1,626,622 + -0.7
1,626,622 + -2.0
1,626,622 + -0.9
1,626,622 + -0.5
1,626,622 + +0.6
1,626,622 + -0.2
1,626,622 + -0.2
1,626,623 - -0.2
1,626,623 - -1.0
1,626,623 - +0.9
1,626,623 - -2.8
1,626,623 - -0.1
1,626,623 - +1.2
1,626,708 + QEN71_RS07320 0.19 -1.0
1,626,708 + QEN71_RS07320 0.19 -1.1
1,626,708 + QEN71_RS07320 0.19 -0.1
1,626,708 + QEN71_RS07320 0.19 +1.9
1,626,708 + QEN71_RS07320 0.19 -0.6
1,626,708 + QEN71_RS07320 0.19 +0.3
1,626,708 + QEN71_RS07320 0.19 -0.1
1,626,708 + QEN71_RS07320 0.19 +0.7
1,626,708 + QEN71_RS07320 0.19 -0.3
1,626,708 + QEN71_RS07320 0.19 +0.6
1,626,709 - QEN71_RS07320 0.19 -0.3
1,626,709 - QEN71_RS07320 0.19 +0.3
1,626,709 - QEN71_RS07320 0.19 +0.3
1,626,709 - QEN71_RS07320 0.19 -0.2
1,626,709 - QEN71_RS07320 0.19 -0.6
1,626,709 - QEN71_RS07320 0.19 +0.5
1,626,709 - QEN71_RS07320 0.19 +0.4
1,626,712 + QEN71_RS07320 0.20 -1.0
1,626,712 + QEN71_RS07320 0.20 -0.7
1,626,712 + QEN71_RS07320 0.20 +0.2
1,626,712 + QEN71_RS07320 0.20 +0.1
1,626,712 + QEN71_RS07320 0.20 -1.1
1,626,713 - QEN71_RS07320 0.20 +0.5
1,626,713 - QEN71_RS07320 0.20 +1.3
1,626,713 - QEN71_RS07320 0.20 -0.4
1,626,713 - QEN71_RS07320 0.20 +0.1
1,626,939 + QEN71_RS07320 0.77 +0.4
1,626,939 + QEN71_RS07320 0.77 +0.4
1,626,939 + QEN71_RS07320 0.77 -1.4
1,626,939 + QEN71_RS07320 0.77 -0.8
1,626,939 + QEN71_RS07320 0.77 -0.2
1,626,940 - QEN71_RS07320 0.78 +0.2
1,626,940 - QEN71_RS07320 0.78 -0.2
1,626,940 - QEN71_RS07320 0.78 +1.3
1,626,940 - QEN71_RS07320 0.78 -2.2
1,626,940 - QEN71_RS07320 0.78 -0.4
1,626,940 - QEN71_RS07320 0.78 -1.0
1,626,940 - QEN71_RS07320 0.78 -0.0
1,626,940 - QEN71_RS07320 0.78 -0.5
1,626,940 - QEN71_RS07320 0.78 -0.9
1,627,049 + +0.2
1,627,096 + +0.8
1,627,096 + +0.1
1,627,097 - -0.1
1,627,126 + -2.2
1,627,126 + +0.1
1,627,126 + +0.0
1,627,126 + +0.4
1,627,126 + -0.2
1,627,127 - -1.3
1,627,127 - +1.3
1,627,155 + -0.2
1,627,156 - +0.5
1,627,163 - -0.5
1,627,271 + QEN71_RS07325 0.34 +0.6
1,627,272 - QEN71_RS07325 0.34 -0.5
1,627,272 - QEN71_RS07325 0.34 -0.9
1,627,273 + QEN71_RS07325 0.34 -0.1
1,627,273 + QEN71_RS07325 0.34 +2.7
1,627,274 - QEN71_RS07325 0.34 +1.6
1,627,274 - QEN71_RS07325 0.34 +2.1
1,627,274 - QEN71_RS07325 0.34 -0.8
1,627,274 - QEN71_RS07325 0.34 +0.5
1,627,274 - QEN71_RS07325 0.34 -0.3
1,627,361 + QEN71_RS07325 0.53 -0.6
1,627,361 + QEN71_RS07325 0.53 -1.7
1,627,361 + QEN71_RS07325 0.53 +0.4
1,627,361 + QEN71_RS07325 0.53 +1.0
1,627,361 + QEN71_RS07325 0.53 +0.2
1,627,361 + QEN71_RS07325 0.53 +0.7
1,627,361 + QEN71_RS07325 0.53 -0.3
1,627,362 - QEN71_RS07325 0.54 +0.9
1,627,362 - QEN71_RS07325 0.54 -1.1
1,627,362 - QEN71_RS07325 0.54 -0.6
1,627,362 - QEN71_RS07325 0.54 -0.7
1,627,362 - QEN71_RS07325 0.54 +0.5
1,627,362 - QEN71_RS07325 0.54 -1.2
1,627,362 - QEN71_RS07325 0.54 -0.2
1,627,362 - QEN71_RS07325 0.54 +0.1
1,627,505 + QEN71_RS07325 0.85 -0.4
1,627,506 - QEN71_RS07325 0.85 +0.4
1,627,571 + -0.2
1,627,572 - -0.5
1,627,572 - -0.7
1,627,572 - +1.0
1,627,572 - -0.2
1,627,572 - +1.0
1,627,613 + -0.1
1,627,613 + -0.6
1,627,613 + -0.5

Or see this region's nucleotide sequence