Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS01970

Experiment: D-Fructose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS01960 and QEN71_RS01965 are separated by 55 nucleotidesQEN71_RS01965 and QEN71_RS01970 are separated by 524 nucleotidesQEN71_RS01970 and QEN71_RS01975 are separated by 202 nucleotides QEN71_RS01960: QEN71_RS01960 - D-aminoacylase, at 432,464 to 433,951 _RS01960 QEN71_RS01965: QEN71_RS01965 - RidA family protein, at 434,007 to 434,393 _RS01965 QEN71_RS01970: QEN71_RS01970 - IS481 family transposase, at 434,918 to 436,057 _RS01970 QEN71_RS01975: QEN71_RS01975 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 436,260 to 437,084 _RS01975 Position (kb) 434 435 436 437Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 433.986 kb on + strandat 433.986 kb on + strandat 434.270 kb on + strand, within QEN71_RS01965at 434.270 kb on + strand, within QEN71_RS01965at 434.270 kb on + strand, within QEN71_RS01965at 434.270 kb on + strand, within QEN71_RS01965at 434.271 kb on - strand, within QEN71_RS01965at 434.271 kb on - strand, within QEN71_RS01965at 434.271 kb on - strand, within QEN71_RS01965at 434.273 kb on + strand, within QEN71_RS01965at 434.274 kb on - strand, within QEN71_RS01965at 434.274 kb on - strand, within QEN71_RS01965at 434.289 kb on + strand, within QEN71_RS01965at 434.289 kb on + strand, within QEN71_RS01965at 434.289 kb on + strand, within QEN71_RS01965at 434.289 kb on + strand, within QEN71_RS01965at 434.289 kb on + strand, within QEN71_RS01965at 434.290 kb on - strand, within QEN71_RS01965at 434.290 kb on - strand, within QEN71_RS01965at 434.290 kb on - strand, within QEN71_RS01965at 434.290 kb on - strand, within QEN71_RS01965at 434.333 kb on + strand, within QEN71_RS01965at 434.333 kb on + strand, within QEN71_RS01965at 434.333 kb on + strand, within QEN71_RS01965at 434.333 kb on + strand, within QEN71_RS01965at 434.333 kb on + strand, within QEN71_RS01965at 434.333 kb on + strand, within QEN71_RS01965at 434.333 kb on + strand, within QEN71_RS01965at 434.333 kb on + strand, within QEN71_RS01965at 434.333 kb on + strand, within QEN71_RS01965at 434.333 kb on + strand, within QEN71_RS01965at 434.333 kb on + strand, within QEN71_RS01965at 434.333 kb on + strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.334 kb on - strand, within QEN71_RS01965at 434.339 kb on + strand, within QEN71_RS01965at 434.340 kb on - strand, within QEN71_RS01965at 434.348 kb on + strand, within QEN71_RS01965at 434.349 kb on - strand, within QEN71_RS01965at 434.373 kb on + strandat 434.373 kb on + strandat 434.374 kb on - strandat 434.375 kb on + strandat 434.375 kb on + strandat 434.375 kb on + strandat 434.375 kb on + strandat 434.375 kb on + strandat 434.375 kb on + strandat 434.375 kb on + strandat 434.375 kb on + strandat 434.376 kb on - strandat 434.376 kb on - strandat 434.376 kb on - strandat 434.376 kb on - strandat 434.376 kb on - strandat 434.519 kb on + strandat 434.519 kb on + strandat 434.519 kb on + strandat 434.519 kb on + strandat 434.564 kb on - strandat 434.590 kb on - strandat 434.590 kb on - strandat 434.648 kb on - strandat 434.648 kb on - strandat 434.648 kb on - strandat 434.748 kb on - strandat 436.182 kb on + strandat 436.261 kb on + strandat 436.261 kb on + strandat 436.261 kb on + strandat 436.284 kb on - strandat 436.301 kb on + strandat 436.325 kb on + strandat 436.325 kb on + strandat 436.348 kb on + strand, within QEN71_RS01975at 436.357 kb on + strand, within QEN71_RS01975at 436.357 kb on + strand, within QEN71_RS01975at 436.357 kb on + strand, within QEN71_RS01975at 436.358 kb on - strand, within QEN71_RS01975at 436.371 kb on - strand, within QEN71_RS01975at 436.454 kb on + strand, within QEN71_RS01975at 436.454 kb on + strand, within QEN71_RS01975at 436.454 kb on + strand, within QEN71_RS01975at 436.455 kb on - strand, within QEN71_RS01975at 436.455 kb on - strand, within QEN71_RS01975at 436.459 kb on + strand, within QEN71_RS01975at 436.459 kb on + strand, within QEN71_RS01975at 436.459 kb on + strand, within QEN71_RS01975at 436.459 kb on + strand, within QEN71_RS01975at 436.459 kb on + strand, within QEN71_RS01975at 436.460 kb on - strand, within QEN71_RS01975at 436.460 kb on - strand, within QEN71_RS01975at 436.460 kb on - strand, within QEN71_RS01975at 436.460 kb on - strand, within QEN71_RS01975at 436.498 kb on + strand, within QEN71_RS01975at 436.498 kb on + strand, within QEN71_RS01975at 436.498 kb on + strand, within QEN71_RS01975at 436.498 kb on + strand, within QEN71_RS01975at 436.498 kb on + strand, within QEN71_RS01975at 436.498 kb on + strand, within QEN71_RS01975at 436.499 kb on - strand, within QEN71_RS01975at 436.499 kb on - strand, within QEN71_RS01975at 436.499 kb on - strand, within QEN71_RS01975at 436.553 kb on + strand, within QEN71_RS01975at 436.553 kb on + strand, within QEN71_RS01975at 436.553 kb on + strand, within QEN71_RS01975at 436.554 kb on - strand, within QEN71_RS01975at 436.554 kb on - strand, within QEN71_RS01975at 436.630 kb on + strand, within QEN71_RS01975at 436.630 kb on + strand, within QEN71_RS01975at 436.630 kb on + strand, within QEN71_RS01975at 436.630 kb on + strand, within QEN71_RS01975at 436.630 kb on + strand, within QEN71_RS01975at 436.631 kb on - strand, within QEN71_RS01975at 436.631 kb on - strand, within QEN71_RS01975at 436.631 kb on - strand, within QEN71_RS01975at 436.631 kb on - strand, within QEN71_RS01975at 436.631 kb on - strand, within QEN71_RS01975at 436.631 kb on - strand, within QEN71_RS01975at 436.631 kb on - strand, within QEN71_RS01975at 436.631 kb on - strand, within QEN71_RS01975at 436.631 kb on - strand, within QEN71_RS01975at 436.822 kb on + strand, within QEN71_RS01975at 436.822 kb on + strand, within QEN71_RS01975at 436.823 kb on - strand, within QEN71_RS01975at 436.850 kb on + strand, within QEN71_RS01975at 436.850 kb on + strand, within QEN71_RS01975at 436.851 kb on - strand, within QEN71_RS01975at 436.873 kb on + strand, within QEN71_RS01975at 436.873 kb on + strand, within QEN71_RS01975at 436.873 kb on + strand, within QEN71_RS01975at 436.873 kb on + strand, within QEN71_RS01975at 436.873 kb on + strand, within QEN71_RS01975at 436.874 kb on - strand, within QEN71_RS01975at 436.874 kb on - strand, within QEN71_RS01975at 436.874 kb on - strand, within QEN71_RS01975at 436.874 kb on - strand, within QEN71_RS01975at 436.930 kb on + strand, within QEN71_RS01975at 436.930 kb on + strand, within QEN71_RS01975at 436.930 kb on + strand, within QEN71_RS01975at 436.930 kb on + strand, within QEN71_RS01975at 437.032 kb on + strandat 437.032 kb on + strandat 437.032 kb on + strandat 437.033 kb on - strandat 437.033 kb on - strandat 437.044 kb on + strandat 437.044 kb on + strandat 437.045 kb on - strandat 437.045 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
remove
433,986 + -1.6
433,986 + -1.9
434,270 + QEN71_RS01965 0.68 +1.2
434,270 + QEN71_RS01965 0.68 +1.4
434,270 + QEN71_RS01965 0.68 +1.4
434,270 + QEN71_RS01965 0.68 -1.6
434,271 - QEN71_RS01965 0.68 -1.7
434,271 - QEN71_RS01965 0.68 +1.1
434,271 - QEN71_RS01965 0.68 +0.1
434,273 + QEN71_RS01965 0.69 -0.7
434,274 - QEN71_RS01965 0.69 +1.0
434,274 - QEN71_RS01965 0.69 -1.8
434,289 + QEN71_RS01965 0.73 +0.6
434,289 + QEN71_RS01965 0.73 +0.2
434,289 + QEN71_RS01965 0.73 +1.0
434,289 + QEN71_RS01965 0.73 -0.0
434,289 + QEN71_RS01965 0.73 -1.3
434,290 - QEN71_RS01965 0.73 +1.2
434,290 - QEN71_RS01965 0.73 -0.6
434,290 - QEN71_RS01965 0.73 +0.4
434,290 - QEN71_RS01965 0.73 -1.2
434,333 + QEN71_RS01965 0.84 -1.9
434,333 + QEN71_RS01965 0.84 -0.2
434,333 + QEN71_RS01965 0.84 +1.2
434,333 + QEN71_RS01965 0.84 -0.1
434,333 + QEN71_RS01965 0.84 +0.3
434,333 + QEN71_RS01965 0.84 -0.7
434,333 + QEN71_RS01965 0.84 +0.8
434,333 + QEN71_RS01965 0.84 -0.7
434,333 + QEN71_RS01965 0.84 -0.4
434,333 + QEN71_RS01965 0.84 -0.3
434,333 + QEN71_RS01965 0.84 -0.0
434,333 + QEN71_RS01965 0.84 +1.0
434,334 - QEN71_RS01965 0.84 +0.1
434,334 - QEN71_RS01965 0.84 +0.5
434,334 - QEN71_RS01965 0.84 +1.0
434,334 - QEN71_RS01965 0.84 -0.2
434,334 - QEN71_RS01965 0.84 +0.4
434,334 - QEN71_RS01965 0.84 -0.5
434,334 - QEN71_RS01965 0.84 +0.2
434,334 - QEN71_RS01965 0.84 +2.0
434,334 - QEN71_RS01965 0.84 -0.0
434,334 - QEN71_RS01965 0.84 +1.6
434,334 - QEN71_RS01965 0.84 -1.0
434,334 - QEN71_RS01965 0.84 +0.5
434,334 - QEN71_RS01965 0.84 +1.1
434,334 - QEN71_RS01965 0.84 -0.2
434,334 - QEN71_RS01965 0.84 +1.2
434,334 - QEN71_RS01965 0.84 -0.7
434,334 - QEN71_RS01965 0.84 +1.0
434,339 + QEN71_RS01965 0.86 -1.9
434,340 - QEN71_RS01965 0.86 -0.3
434,348 + QEN71_RS01965 0.88 -1.8
434,349 - QEN71_RS01965 0.88 +0.3
434,373 + -1.8
434,373 + -0.2
434,374 - -2.3
434,375 + +0.6
434,375 + -0.0
434,375 + +0.3
434,375 + -0.4
434,375 + +0.2
434,375 + +0.1
434,375 + +0.6
434,375 + -0.1
434,376 - +0.3
434,376 - -0.5
434,376 - +0.1
434,376 - +1.1
434,376 - -0.9
434,519 + -1.4
434,519 + +1.0
434,519 + -1.1
434,519 + -0.3
434,564 - -0.5
434,590 - +0.1
434,590 - -0.4
434,648 - +0.4
434,648 - +0.2
434,648 - -0.2
434,748 - +0.0
436,182 + +0.8
436,261 + -0.0
436,261 + -0.6
436,261 + -0.5
436,284 - -1.0
436,301 + +0.6
436,325 + +0.5
436,325 + -1.7
436,348 + QEN71_RS01975 0.11 -2.4
436,357 + QEN71_RS01975 0.12 -0.0
436,357 + QEN71_RS01975 0.12 -0.4
436,357 + QEN71_RS01975 0.12 +1.0
436,358 - QEN71_RS01975 0.12 +1.5
436,371 - QEN71_RS01975 0.13 -0.9
436,454 + QEN71_RS01975 0.24 -0.4
436,454 + QEN71_RS01975 0.24 -0.0
436,454 + QEN71_RS01975 0.24 -1.1
436,455 - QEN71_RS01975 0.24 -1.2
436,455 - QEN71_RS01975 0.24 -0.7
436,459 + QEN71_RS01975 0.24 -0.4
436,459 + QEN71_RS01975 0.24 -0.0
436,459 + QEN71_RS01975 0.24 -2.2
436,459 + QEN71_RS01975 0.24 -1.7
436,459 + QEN71_RS01975 0.24 +1.0
436,460 - QEN71_RS01975 0.24 +0.7
436,460 - QEN71_RS01975 0.24 -2.8
436,460 - QEN71_RS01975 0.24 -0.9
436,460 - QEN71_RS01975 0.24 -0.7
436,498 + QEN71_RS01975 0.29 -0.6
436,498 + QEN71_RS01975 0.29 -1.1
436,498 + QEN71_RS01975 0.29 -0.4
436,498 + QEN71_RS01975 0.29 -1.0
436,498 + QEN71_RS01975 0.29 -1.9
436,498 + QEN71_RS01975 0.29 +0.4
436,499 - QEN71_RS01975 0.29 -1.4
436,499 - QEN71_RS01975 0.29 -0.5
436,499 - QEN71_RS01975 0.29 -0.0
436,553 + QEN71_RS01975 0.36 -0.4
436,553 + QEN71_RS01975 0.36 -0.2
436,553 + QEN71_RS01975 0.36 -1.4
436,554 - QEN71_RS01975 0.36 -0.5
436,554 - QEN71_RS01975 0.36 +0.2
436,630 + QEN71_RS01975 0.45 -0.6
436,630 + QEN71_RS01975 0.45 +0.5
436,630 + QEN71_RS01975 0.45 -1.0
436,630 + QEN71_RS01975 0.45 -3.0
436,630 + QEN71_RS01975 0.45 +0.3
436,631 - QEN71_RS01975 0.45 -1.6
436,631 - QEN71_RS01975 0.45 +0.3
436,631 - QEN71_RS01975 0.45 -0.7
436,631 - QEN71_RS01975 0.45 -0.6
436,631 - QEN71_RS01975 0.45 +1.6
436,631 - QEN71_RS01975 0.45 -0.4
436,631 - QEN71_RS01975 0.45 -0.3
436,631 - QEN71_RS01975 0.45 -0.4
436,631 - QEN71_RS01975 0.45 +1.0
436,822 + QEN71_RS01975 0.68 +0.4
436,822 + QEN71_RS01975 0.68 -1.2
436,823 - QEN71_RS01975 0.68 +0.2
436,850 + QEN71_RS01975 0.72 +0.7
436,850 + QEN71_RS01975 0.72 -0.9
436,851 - QEN71_RS01975 0.72 -0.8
436,873 + QEN71_RS01975 0.74 -0.6
436,873 + QEN71_RS01975 0.74 -1.2
436,873 + QEN71_RS01975 0.74 -1.8
436,873 + QEN71_RS01975 0.74 -0.6
436,873 + QEN71_RS01975 0.74 -0.7
436,874 - QEN71_RS01975 0.74 -0.4
436,874 - QEN71_RS01975 0.74 -2.6
436,874 - QEN71_RS01975 0.74 -0.4
436,874 - QEN71_RS01975 0.74 -0.8
436,930 + QEN71_RS01975 0.81 -0.5
436,930 + QEN71_RS01975 0.81 -0.0
436,930 + QEN71_RS01975 0.81 -0.8
436,930 + QEN71_RS01975 0.81 -1.0
437,032 + -1.1
437,032 + -2.0
437,032 + -2.6
437,033 - -1.2
437,033 - +0.7
437,044 + -0.3
437,044 + +1.1
437,045 - +0.2
437,045 - +0.1

Or see this region's nucleotide sequence