Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS00245

Experiment: D-Fructose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS00240 and QEN71_RS00245 are separated by 127 nucleotidesQEN71_RS00245 and QEN71_RS00250 are separated by 380 nucleotidesQEN71_RS00250 and QEN71_RS00255 are separated by 165 nucleotides QEN71_RS00240: QEN71_RS00240 - rod shape-determining protein MreC, at 50,249 to 51,349 _RS00240 QEN71_RS00245: QEN71_RS00245 - rod shape-determining protein, at 51,477 to 52,520 _RS00245 QEN71_RS00250: QEN71_RS00250 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC, at 52,901 to 53,200 _RS00250 QEN71_RS00255: QEN71_RS00255 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA, at 53,366 to 54,859 _RS00255 Position (kb) 51 52 53Strain fitness (log2 ratio) -2 -1 0 1at 50.527 kb on - strand, within QEN71_RS00240at 50.527 kb on - strand, within QEN71_RS00240at 50.527 kb on - strand, within QEN71_RS00240at 50.532 kb on - strand, within QEN71_RS00240at 50.532 kb on - strand, within QEN71_RS00240at 50.532 kb on - strand, within QEN71_RS00240at 50.532 kb on - strand, within QEN71_RS00240at 50.532 kb on - strand, within QEN71_RS00240at 51.479 kb on - strandat 51.479 kb on - strandat 51.479 kb on - strandat 51.479 kb on - strandat 51.479 kb on - strandat 51.485 kb on - strandat 51.485 kb on - strandat 52.657 kb on - strandat 52.657 kb on - strandat 52.657 kb on - strandat 52.659 kb on - strandat 52.659 kb on - strandat 52.659 kb on - strandat 52.659 kb on - strandat 52.659 kb on - strandat 52.659 kb on - strandat 52.659 kb on - strandat 52.659 kb on - strandat 52.659 kb on - strandat 52.659 kb on - strandat 52.716 kb on - strandat 52.716 kb on - strandat 52.756 kb on - strandat 52.756 kb on - strandat 52.756 kb on - strandat 52.756 kb on - strandat 52.757 kb on + strandat 52.757 kb on + strandat 52.757 kb on + strandat 52.837 kb on + strandat 52.837 kb on + strandat 52.837 kb on + strandat 53.198 kb on + strandat 53.216 kb on + strandat 53.216 kb on + strandat 53.216 kb on + strandat 53.216 kb on + strandat 53.216 kb on + strandat 53.220 kb on + strandat 53.220 kb on + strandat 53.220 kb on + strandat 53.220 kb on + strandat 53.220 kb on + strandat 53.220 kb on + strandat 53.273 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Fructose (C)
remove
50,527 - QEN71_RS00240 0.25 -1.2
50,527 - QEN71_RS00240 0.25 -1.7
50,527 - QEN71_RS00240 0.25 -0.5
50,532 - QEN71_RS00240 0.26 -1.9
50,532 - QEN71_RS00240 0.26 -0.3
50,532 - QEN71_RS00240 0.26 -0.4
50,532 - QEN71_RS00240 0.26 -0.6
50,532 - QEN71_RS00240 0.26 +0.8
51,479 - +0.4
51,479 - -0.3
51,479 - -0.7
51,479 - +0.1
51,479 - -1.0
51,485 - -1.1
51,485 - -0.9
52,657 - +0.3
52,657 - -0.6
52,657 - +0.4
52,659 - -0.8
52,659 - -1.5
52,659 - -0.1
52,659 - -0.7
52,659 - -1.0
52,659 - -0.8
52,659 - +0.1
52,659 - -0.2
52,659 - -0.6
52,659 - -0.6
52,716 - -2.6
52,716 - -0.6
52,756 - +1.1
52,756 - +1.0
52,756 - +0.8
52,756 - -0.2
52,757 + -0.0
52,757 + -0.5
52,757 + -2.2
52,837 + -1.3
52,837 + -0.4
52,837 + -1.9
53,198 + -0.5
53,216 + -0.4
53,216 + +0.8
53,216 + -0.2
53,216 + -1.7
53,216 + +0.9
53,220 + -0.4
53,220 + +0.7
53,220 + -0.6
53,220 + -0.8
53,220 + -1.5
53,220 + -0.8
53,273 + -1.0

Or see this region's nucleotide sequence