Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS40105

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS40090 and QEN71_RS40095 overlap by 20 nucleotidesQEN71_RS40095 and QEN71_RS40100 are separated by 315 nucleotidesQEN71_RS40100 and QEN71_RS40105 are separated by 85 nucleotidesQEN71_RS40105 and QEN71_RS40110 overlap by 22 nucleotidesQEN71_RS40110 and QEN71_RS40115 overlap by 26 nucleotidesQEN71_RS40115 and QEN71_RS40120 are separated by 77 nucleotides QEN71_RS40090: QEN71_RS40090 - recombinase family protein, at 73,226 to 75,283 _RS40090 QEN71_RS40095: QEN71_RS40095 - hypothetical protein, at 75,264 to 75,431 _RS40095 QEN71_RS40100: QEN71_RS40100 - ATP-binding protein, at 75,747 to 75,917 _RS40100 QEN71_RS40105: QEN71_RS40105 - tyrosine-type recombinase/integrase, at 76,003 to 76,614 _RS40105 QEN71_RS40110: QEN71_RS40110 - hypothetical protein, at 76,593 to 76,889 _RS40110 QEN71_RS40115: QEN71_RS40115 - hypothetical protein, at 76,864 to 76,947 _RS40115 QEN71_RS40120: QEN71_RS40120 - tyrosine-type recombinase/integrase, at 77,025 to 78,002 _RS40120 Position (kb) 76 77Strain fitness (log2 ratio) -3 -2 -1 0 1at 75.032 kb on + strand, within QEN71_RS40090at 75.032 kb on + strand, within QEN71_RS40090at 75.033 kb on - strand, within QEN71_RS40090at 75.998 kb on - strandat 76.266 kb on + strand, within QEN71_RS40105at 76.498 kb on + strand, within QEN71_RS40105at 76.643 kb on + strand, within QEN71_RS40110at 77.351 kb on + strand, within QEN71_RS40120at 77.351 kb on + strand, within QEN71_RS40120at 77.594 kb on - strand, within QEN71_RS40120at 77.594 kb on - strand, within QEN71_RS40120at 77.594 kb on - strand, within QEN71_RS40120

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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75,032 + QEN71_RS40090 0.88 +0.1
75,032 + QEN71_RS40090 0.88 -2.8
75,033 - QEN71_RS40090 0.88 +0.1
75,998 - +1.2
76,266 + QEN71_RS40105 0.43 -0.4
76,498 + QEN71_RS40105 0.81 -0.7
76,643 + QEN71_RS40110 0.17 -0.2
77,351 + QEN71_RS40120 0.33 -0.2
77,351 + QEN71_RS40120 0.33 -0.7
77,594 - QEN71_RS40120 0.58 -0.6
77,594 - QEN71_RS40120 0.58 +1.0
77,594 - QEN71_RS40120 0.58 -0.0

Or see this region's nucleotide sequence