Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS38745

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS38740 and QEN71_RS38745 are separated by 72 nucleotidesQEN71_RS38745 and QEN71_RS38750 overlap by 4 nucleotidesQEN71_RS38750 and QEN71_RS38755 are separated by 2 nucleotides QEN71_RS38740: QEN71_RS38740 - porin, at 2,070,114 to 2,071,226 _RS38740 QEN71_RS38745: QEN71_RS38745 - SDR family oxidoreductase, at 2,071,299 to 2,072,108 _RS38745 QEN71_RS38750: QEN71_RS38750 - aldose 1-epimerase, at 2,072,105 to 2,072,983 _RS38750 QEN71_RS38755: QEN71_RS38755 - aldolase/citrate lyase family protein, at 2,072,986 to 2,073,819 _RS38755 Position (kb) 2071 2072 2073Strain fitness (log2 ratio) -2 -1 0 1at 2070.428 kb on - strand, within QEN71_RS38740at 2070.433 kb on + strand, within QEN71_RS38740at 2070.433 kb on + strand, within QEN71_RS38740at 2070.434 kb on - strand, within QEN71_RS38740at 2070.466 kb on + strand, within QEN71_RS38740at 2070.467 kb on - strand, within QEN71_RS38740at 2070.518 kb on + strand, within QEN71_RS38740at 2070.529 kb on + strand, within QEN71_RS38740at 2070.530 kb on - strand, within QEN71_RS38740at 2070.530 kb on - strand, within QEN71_RS38740at 2070.577 kb on + strand, within QEN71_RS38740at 2070.578 kb on - strand, within QEN71_RS38740at 2070.744 kb on - strand, within QEN71_RS38740at 2070.829 kb on + strand, within QEN71_RS38740at 2070.830 kb on - strand, within QEN71_RS38740at 2070.856 kb on + strand, within QEN71_RS38740at 2070.925 kb on + strand, within QEN71_RS38740at 2070.925 kb on + strand, within QEN71_RS38740at 2071.097 kb on - strand, within QEN71_RS38740at 2071.748 kb on + strand, within QEN71_RS38745at 2071.748 kb on + strand, within QEN71_RS38745at 2073.092 kb on + strand, within QEN71_RS38755at 2073.093 kb on - strand, within QEN71_RS38755

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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2,070,428 - QEN71_RS38740 0.28 +0.0
2,070,433 + QEN71_RS38740 0.29 -2.1
2,070,433 + QEN71_RS38740 0.29 -0.5
2,070,434 - QEN71_RS38740 0.29 +0.4
2,070,466 + QEN71_RS38740 0.32 +0.0
2,070,467 - QEN71_RS38740 0.32 +0.9
2,070,518 + QEN71_RS38740 0.36 -0.0
2,070,529 + QEN71_RS38740 0.37 -0.6
2,070,530 - QEN71_RS38740 0.37 -1.2
2,070,530 - QEN71_RS38740 0.37 +0.1
2,070,577 + QEN71_RS38740 0.42 +1.1
2,070,578 - QEN71_RS38740 0.42 +0.2
2,070,744 - QEN71_RS38740 0.57 +0.8
2,070,829 + QEN71_RS38740 0.64 -0.9
2,070,830 - QEN71_RS38740 0.64 -0.8
2,070,856 + QEN71_RS38740 0.67 +0.2
2,070,925 + QEN71_RS38740 0.73 -0.4
2,070,925 + QEN71_RS38740 0.73 -1.1
2,071,097 - QEN71_RS38740 0.88 +1.3
2,071,748 + QEN71_RS38745 0.55 -0.3
2,071,748 + QEN71_RS38745 0.55 +0.4
2,073,092 + QEN71_RS38755 0.13 -0.4
2,073,093 - QEN71_RS38755 0.13 -0.5

Or see this region's nucleotide sequence