Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS36670

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS36665 and QEN71_RS36670 are separated by 38 nucleotidesQEN71_RS36670 and QEN71_RS36675 overlap by 4 nucleotides QEN71_RS36665: QEN71_RS36665 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 1,608,885 to 1,609,883 _RS36665 QEN71_RS36670: QEN71_RS36670 - four-carbon acid sugar kinase family protein, at 1,609,922 to 1,611,181 _RS36670 QEN71_RS36675: QEN71_RS36675 - 2-keto-3-deoxygluconate permease, at 1,611,178 to 1,612,176 _RS36675 Position (kb) 1609 1610 1611 1612Strain fitness (log2 ratio) -2 -1 0 1 2at 1609.901 kb on - strandat 1609.901 kb on - strandat 1609.901 kb on - strandat 1609.978 kb on - strandat 1610.288 kb on + strand, within QEN71_RS36670at 1610.660 kb on - strand, within QEN71_RS36670at 1610.660 kb on - strand, within QEN71_RS36670at 1610.663 kb on + strand, within QEN71_RS36670at 1610.663 kb on + strand, within QEN71_RS36670at 1610.664 kb on - strand, within QEN71_RS36670at 1610.664 kb on - strand, within QEN71_RS36670at 1610.664 kb on - strand, within QEN71_RS36670at 1610.949 kb on + strand, within QEN71_RS36670at 1610.949 kb on + strand, within QEN71_RS36670at 1610.950 kb on - strand, within QEN71_RS36670at 1610.950 kb on - strand, within QEN71_RS36670at 1611.001 kb on + strand, within QEN71_RS36670at 1611.002 kb on - strand, within QEN71_RS36670at 1611.234 kb on - strandat 1611.330 kb on + strand, within QEN71_RS36675at 1611.330 kb on + strand, within QEN71_RS36675at 1611.330 kb on + strand, within QEN71_RS36675at 1611.331 kb on - strand, within QEN71_RS36675at 1611.332 kb on + strand, within QEN71_RS36675at 1611.332 kb on + strand, within QEN71_RS36675at 1611.333 kb on - strand, within QEN71_RS36675at 1611.333 kb on - strand, within QEN71_RS36675at 1611.333 kb on - strand, within QEN71_RS36675at 1611.333 kb on - strand, within QEN71_RS36675at 1611.443 kb on + strand, within QEN71_RS36675at 1611.444 kb on - strand, within QEN71_RS36675at 1611.688 kb on + strand, within QEN71_RS36675at 1611.688 kb on + strand, within QEN71_RS36675at 1611.688 kb on + strand, within QEN71_RS36675at 1611.689 kb on - strand, within QEN71_RS36675at 1611.743 kb on + strand, within QEN71_RS36675at 1611.743 kb on + strand, within QEN71_RS36675at 1611.744 kb on - strand, within QEN71_RS36675at 1611.744 kb on - strand, within QEN71_RS36675at 1611.744 kb on - strand, within QEN71_RS36675at 1611.744 kb on - strand, within QEN71_RS36675at 1611.770 kb on + strand, within QEN71_RS36675at 1611.770 kb on + strand, within QEN71_RS36675at 1611.770 kb on + strand, within QEN71_RS36675at 1611.770 kb on + strand, within QEN71_RS36675at 1611.771 kb on - strand, within QEN71_RS36675at 1611.790 kb on - strand, within QEN71_RS36675at 1611.790 kb on - strand, within QEN71_RS36675at 1611.790 kb on - strand, within QEN71_RS36675at 1611.791 kb on + strand, within QEN71_RS36675at 1611.791 kb on + strand, within QEN71_RS36675at 1611.791 kb on + strand, within QEN71_RS36675at 1611.791 kb on + strand, within QEN71_RS36675at 1611.791 kb on + strand, within QEN71_RS36675at 1611.791 kb on + strand, within QEN71_RS36675at 1611.791 kb on + strand, within QEN71_RS36675at 1611.791 kb on + strand, within QEN71_RS36675at 1611.792 kb on - strand, within QEN71_RS36675at 1611.792 kb on - strand, within QEN71_RS36675at 1611.792 kb on - strand, within QEN71_RS36675at 1611.792 kb on - strand, within QEN71_RS36675at 1611.792 kb on - strand, within QEN71_RS36675at 1611.792 kb on - strand, within QEN71_RS36675at 1611.792 kb on - strand, within QEN71_RS36675at 1611.792 kb on - strand, within QEN71_RS36675at 1611.792 kb on - strand, within QEN71_RS36675at 1611.962 kb on + strand, within QEN71_RS36675at 1611.962 kb on + strand, within QEN71_RS36675at 1611.963 kb on - strand, within QEN71_RS36675at 1611.963 kb on - strand, within QEN71_RS36675at 1611.963 kb on - strand, within QEN71_RS36675at 1612.004 kb on + strand, within QEN71_RS36675at 1612.004 kb on + strand, within QEN71_RS36675at 1612.004 kb on + strand, within QEN71_RS36675at 1612.005 kb on - strand, within QEN71_RS36675at 1612.005 kb on - strand, within QEN71_RS36675at 1612.005 kb on - strand, within QEN71_RS36675

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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1,609,901 - +0.2
1,609,901 - -0.0
1,609,901 - -1.3
1,609,978 - -0.5
1,610,288 + QEN71_RS36670 0.29 +0.4
1,610,660 - QEN71_RS36670 0.59 -0.2
1,610,660 - QEN71_RS36670 0.59 -0.5
1,610,663 + QEN71_RS36670 0.59 +0.5
1,610,663 + QEN71_RS36670 0.59 +1.6
1,610,664 - QEN71_RS36670 0.59 +0.8
1,610,664 - QEN71_RS36670 0.59 -1.2
1,610,664 - QEN71_RS36670 0.59 +0.3
1,610,949 + QEN71_RS36670 0.82 +1.0
1,610,949 + QEN71_RS36670 0.82 -0.4
1,610,950 - QEN71_RS36670 0.82 +0.2
1,610,950 - QEN71_RS36670 0.82 -0.9
1,611,001 + QEN71_RS36670 0.86 -0.7
1,611,002 - QEN71_RS36670 0.86 +0.4
1,611,234 - +1.2
1,611,330 + QEN71_RS36675 0.15 -0.3
1,611,330 + QEN71_RS36675 0.15 -0.5
1,611,330 + QEN71_RS36675 0.15 -0.7
1,611,331 - QEN71_RS36675 0.15 -0.1
1,611,332 + QEN71_RS36675 0.15 -0.0
1,611,332 + QEN71_RS36675 0.15 -0.8
1,611,333 - QEN71_RS36675 0.16 +0.2
1,611,333 - QEN71_RS36675 0.16 -0.1
1,611,333 - QEN71_RS36675 0.16 +1.0
1,611,333 - QEN71_RS36675 0.16 -0.8
1,611,443 + QEN71_RS36675 0.27 -0.2
1,611,444 - QEN71_RS36675 0.27 -0.0
1,611,688 + QEN71_RS36675 0.51 +0.7
1,611,688 + QEN71_RS36675 0.51 -0.3
1,611,688 + QEN71_RS36675 0.51 -0.0
1,611,689 - QEN71_RS36675 0.51 -0.0
1,611,743 + QEN71_RS36675 0.57 -1.7
1,611,743 + QEN71_RS36675 0.57 +0.7
1,611,744 - QEN71_RS36675 0.57 +0.2
1,611,744 - QEN71_RS36675 0.57 +0.3
1,611,744 - QEN71_RS36675 0.57 -0.3
1,611,744 - QEN71_RS36675 0.57 -1.7
1,611,770 + QEN71_RS36675 0.59 +0.2
1,611,770 + QEN71_RS36675 0.59 +0.2
1,611,770 + QEN71_RS36675 0.59 -1.2
1,611,770 + QEN71_RS36675 0.59 -0.6
1,611,771 - QEN71_RS36675 0.59 +1.0
1,611,790 - QEN71_RS36675 0.61 -1.0
1,611,790 - QEN71_RS36675 0.61 -0.3
1,611,790 - QEN71_RS36675 0.61 -0.4
1,611,791 + QEN71_RS36675 0.61 +0.8
1,611,791 + QEN71_RS36675 0.61 -0.6
1,611,791 + QEN71_RS36675 0.61 -0.4
1,611,791 + QEN71_RS36675 0.61 -0.9
1,611,791 + QEN71_RS36675 0.61 -0.8
1,611,791 + QEN71_RS36675 0.61 +0.6
1,611,791 + QEN71_RS36675 0.61 -0.3
1,611,791 + QEN71_RS36675 0.61 +0.6
1,611,792 - QEN71_RS36675 0.61 +0.3
1,611,792 - QEN71_RS36675 0.61 +0.1
1,611,792 - QEN71_RS36675 0.61 -0.4
1,611,792 - QEN71_RS36675 0.61 -0.2
1,611,792 - QEN71_RS36675 0.61 -0.7
1,611,792 - QEN71_RS36675 0.61 -0.3
1,611,792 - QEN71_RS36675 0.61 -0.0
1,611,792 - QEN71_RS36675 0.61 -0.6
1,611,792 - QEN71_RS36675 0.61 -0.7
1,611,962 + QEN71_RS36675 0.78 -0.4
1,611,962 + QEN71_RS36675 0.78 +2.0
1,611,963 - QEN71_RS36675 0.79 -2.7
1,611,963 - QEN71_RS36675 0.79 +0.1
1,611,963 - QEN71_RS36675 0.79 +0.0
1,612,004 + QEN71_RS36675 0.83 +0.0
1,612,004 + QEN71_RS36675 0.83 +0.1
1,612,004 + QEN71_RS36675 0.83 -0.5
1,612,005 - QEN71_RS36675 0.83 -1.8
1,612,005 - QEN71_RS36675 0.83 +0.0
1,612,005 - QEN71_RS36675 0.83 -0.9

Or see this region's nucleotide sequence