Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS13725

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS13720 and QEN71_RS13725 are separated by 186 nucleotidesQEN71_RS13725 and QEN71_RS13730 are separated by 40 nucleotides QEN71_RS13720: QEN71_RS13720 - aldehyde dehydrogenase (NADP(+)), at 3,060,080 to 3,061,657 _RS13720 QEN71_RS13725: QEN71_RS13725 - hypothetical protein, at 3,061,844 to 3,062,023 _RS13725 QEN71_RS13730: QEN71_RS13730 - alpha/beta hydrolase, at 3,062,064 to 3,063,050 _RS13730 Position (kb) 3061 3062 3063Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3061.110 kb on - strand, within QEN71_RS13720at 3061.460 kb on + strand, within QEN71_RS13720at 3061.460 kb on + strand, within QEN71_RS13720at 3061.460 kb on + strand, within QEN71_RS13720at 3061.460 kb on + strand, within QEN71_RS13720at 3061.461 kb on - strand, within QEN71_RS13720at 3061.559 kb on + strandat 3061.560 kb on - strandat 3061.560 kb on - strandat 3061.910 kb on - strand, within QEN71_RS13725at 3061.999 kb on + strand, within QEN71_RS13725at 3062.000 kb on - strand, within QEN71_RS13725at 3062.021 kb on + strandat 3062.021 kb on + strandat 3062.225 kb on + strand, within QEN71_RS13730at 3062.225 kb on + strand, within QEN71_RS13730at 3062.225 kb on + strand, within QEN71_RS13730at 3062.225 kb on + strand, within QEN71_RS13730at 3062.226 kb on - strand, within QEN71_RS13730at 3062.226 kb on - strand, within QEN71_RS13730at 3062.226 kb on - strand, within QEN71_RS13730at 3062.247 kb on + strand, within QEN71_RS13730at 3062.248 kb on - strand, within QEN71_RS13730at 3062.250 kb on + strand, within QEN71_RS13730at 3062.733 kb on + strand, within QEN71_RS13730at 3062.964 kb on + strandat 3062.964 kb on + strandat 3062.964 kb on + strandat 3062.964 kb on + strandat 3062.964 kb on + strandat 3062.965 kb on - strandat 3062.965 kb on - strandat 3062.965 kb on - strandat 3062.965 kb on - strandat 3062.965 kb on - strandat 3062.965 kb on - strandat 3062.965 kb on - strandat 3062.965 kb on - strandat 3062.965 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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3,061,110 - QEN71_RS13720 0.65 -2.5
3,061,460 + QEN71_RS13720 0.87 -1.0
3,061,460 + QEN71_RS13720 0.87 -0.4
3,061,460 + QEN71_RS13720 0.87 +1.3
3,061,460 + QEN71_RS13720 0.87 -0.7
3,061,461 - QEN71_RS13720 0.88 +0.1
3,061,559 + +0.1
3,061,560 - -0.2
3,061,560 - +0.4
3,061,910 - QEN71_RS13725 0.37 +0.2
3,061,999 + QEN71_RS13725 0.86 +0.2
3,062,000 - QEN71_RS13725 0.87 -0.1
3,062,021 + -1.3
3,062,021 + -0.6
3,062,225 + QEN71_RS13730 0.16 +0.2
3,062,225 + QEN71_RS13730 0.16 +0.2
3,062,225 + QEN71_RS13730 0.16 -2.8
3,062,225 + QEN71_RS13730 0.16 -0.5
3,062,226 - QEN71_RS13730 0.16 +0.0
3,062,226 - QEN71_RS13730 0.16 -1.9
3,062,226 - QEN71_RS13730 0.16 +0.9
3,062,247 + QEN71_RS13730 0.19 -0.5
3,062,248 - QEN71_RS13730 0.19 -0.5
3,062,250 + QEN71_RS13730 0.19 -1.8
3,062,733 + QEN71_RS13730 0.68 -1.0
3,062,964 + -0.4
3,062,964 + -0.3
3,062,964 + -0.3
3,062,964 + -1.5
3,062,964 + -0.4
3,062,965 - -0.5
3,062,965 - -0.0
3,062,965 - -0.8
3,062,965 - +1.6
3,062,965 - +1.0
3,062,965 - +1.1
3,062,965 - +2.0
3,062,965 - -0.8
3,062,965 - -0.0

Or see this region's nucleotide sequence