Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS04755

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS04745 and QEN71_RS04750 are separated by 73 nucleotidesQEN71_RS04750 and QEN71_RS04755 overlap by 4 nucleotidesQEN71_RS04755 and QEN71_RS04760 are separated by 19 nucleotidesQEN71_RS04760 and QEN71_RS04765 are separated by 155 nucleotides QEN71_RS04745: QEN71_RS04745 - DNA polymerase III subunit epsilon, at 1,035,269 to 1,036,018 _RS04745 QEN71_RS04750: QEN71_RS04750 - ribonuclease HI, at 1,036,092 to 1,036,538 _RS04750 QEN71_RS04755: QEN71_RS04755 - class I SAM-dependent methyltransferase, at 1,036,535 to 1,037,350 _RS04755 QEN71_RS04760: QEN71_RS04760 - hydroxyacylglutathione hydrolase, at 1,037,370 to 1,038,173 _RS04760 QEN71_RS04765: QEN71_RS04765 - transglycosylase SLT domain-containing protein, at 1,038,329 to 1,040,011 _RS04765 Position (kb) 1036 1037 1038Strain fitness (log2 ratio) -2 -1 0 1 2at 1036.113 kb on + strandat 1036.113 kb on + strandat 1036.114 kb on - strandat 1036.114 kb on - strandat 1036.114 kb on - strandat 1036.114 kb on - strandat 1036.114 kb on - strandat 1036.114 kb on - strandat 1036.556 kb on - strandat 1036.556 kb on - strandat 1037.330 kb on + strandat 1037.330 kb on + strandat 1037.330 kb on + strandat 1037.331 kb on - strandat 1037.331 kb on - strandat 1037.331 kb on - strandat 1037.331 kb on - strandat 1037.331 kb on - strandat 1037.331 kb on - strandat 1037.370 kb on - strandat 1037.370 kb on - strandat 1037.370 kb on - strandat 1037.385 kb on + strandat 1037.385 kb on + strandat 1037.385 kb on + strandat 1037.386 kb on - strandat 1037.386 kb on - strandat 1037.386 kb on - strandat 1037.386 kb on - strandat 1037.386 kb on - strandat 1037.386 kb on - strandat 1037.386 kb on - strandat 1037.386 kb on - strandat 1037.386 kb on - strandat 1037.415 kb on + strandat 1037.415 kb on + strandat 1037.415 kb on + strandat 1037.415 kb on + strandat 1037.415 kb on + strandat 1037.415 kb on + strandat 1037.415 kb on + strandat 1037.415 kb on + strandat 1037.415 kb on + strandat 1037.415 kb on + strandat 1037.415 kb on + strandat 1037.415 kb on + strandat 1037.415 kb on + strandat 1037.415 kb on + strandat 1037.415 kb on + strandat 1037.415 kb on + strandat 1037.415 kb on + strandat 1037.415 kb on + strandat 1037.416 kb on - strandat 1037.416 kb on - strandat 1037.416 kb on - strandat 1037.416 kb on - strandat 1037.416 kb on - strandat 1037.416 kb on - strandat 1037.416 kb on - strandat 1037.416 kb on - strandat 1037.416 kb on - strandat 1037.416 kb on - strandat 1037.416 kb on - strandat 1037.416 kb on - strandat 1037.416 kb on - strandat 1037.487 kb on + strand, within QEN71_RS04760at 1037.487 kb on + strand, within QEN71_RS04760at 1037.487 kb on + strand, within QEN71_RS04760at 1037.487 kb on + strand, within QEN71_RS04760at 1037.487 kb on + strand, within QEN71_RS04760at 1037.487 kb on + strand, within QEN71_RS04760at 1037.487 kb on + strand, within QEN71_RS04760at 1037.487 kb on + strand, within QEN71_RS04760at 1037.487 kb on + strand, within QEN71_RS04760at 1037.487 kb on + strand, within QEN71_RS04760at 1037.487 kb on + strand, within QEN71_RS04760at 1037.487 kb on + strand, within QEN71_RS04760at 1037.487 kb on + strand, within QEN71_RS04760at 1037.487 kb on + strand, within QEN71_RS04760at 1037.487 kb on + strand, within QEN71_RS04760at 1037.487 kb on + strand, within QEN71_RS04760at 1037.487 kb on + strand, within QEN71_RS04760at 1037.488 kb on - strand, within QEN71_RS04760at 1037.488 kb on - strand, within QEN71_RS04760at 1037.488 kb on - strand, within QEN71_RS04760at 1037.488 kb on - strand, within QEN71_RS04760at 1037.488 kb on - strand, within QEN71_RS04760at 1037.488 kb on - strand, within QEN71_RS04760at 1037.488 kb on - strand, within QEN71_RS04760at 1037.488 kb on - strand, within QEN71_RS04760at 1037.488 kb on - strand, within QEN71_RS04760at 1037.488 kb on - strand, within QEN71_RS04760at 1037.488 kb on - strand, within QEN71_RS04760at 1037.519 kb on + strand, within QEN71_RS04760at 1037.519 kb on + strand, within QEN71_RS04760at 1037.519 kb on + strand, within QEN71_RS04760at 1037.520 kb on - strand, within QEN71_RS04760at 1037.520 kb on - strand, within QEN71_RS04760at 1037.524 kb on + strand, within QEN71_RS04760at 1037.525 kb on - strand, within QEN71_RS04760at 1037.525 kb on - strand, within QEN71_RS04760at 1037.525 kb on - strand, within QEN71_RS04760at 1037.599 kb on + strand, within QEN71_RS04760at 1037.599 kb on + strand, within QEN71_RS04760at 1037.600 kb on - strand, within QEN71_RS04760at 1037.607 kb on + strand, within QEN71_RS04760at 1037.607 kb on + strand, within QEN71_RS04760at 1037.607 kb on + strand, within QEN71_RS04760at 1037.607 kb on + strand, within QEN71_RS04760at 1037.607 kb on + strand, within QEN71_RS04760at 1037.608 kb on - strand, within QEN71_RS04760at 1037.608 kb on - strand, within QEN71_RS04760at 1037.608 kb on - strand, within QEN71_RS04760at 1037.608 kb on - strand, within QEN71_RS04760at 1037.720 kb on + strand, within QEN71_RS04760at 1037.720 kb on + strand, within QEN71_RS04760at 1037.720 kb on + strand, within QEN71_RS04760at 1037.720 kb on + strand, within QEN71_RS04760at 1037.720 kb on + strand, within QEN71_RS04760at 1037.720 kb on + strand, within QEN71_RS04760at 1037.720 kb on + strand, within QEN71_RS04760at 1037.721 kb on - strand, within QEN71_RS04760at 1037.721 kb on - strand, within QEN71_RS04760at 1037.721 kb on - strand, within QEN71_RS04760at 1037.721 kb on - strand, within QEN71_RS04760at 1037.721 kb on - strand, within QEN71_RS04760at 1037.721 kb on - strand, within QEN71_RS04760at 1037.721 kb on - strand, within QEN71_RS04760at 1037.732 kb on + strand, within QEN71_RS04760at 1037.732 kb on + strand, within QEN71_RS04760at 1037.732 kb on + strand, within QEN71_RS04760at 1037.739 kb on + strand, within QEN71_RS04760at 1037.739 kb on + strand, within QEN71_RS04760at 1037.739 kb on + strand, within QEN71_RS04760at 1037.740 kb on - strand, within QEN71_RS04760at 1037.740 kb on - strand, within QEN71_RS04760at 1037.740 kb on - strand, within QEN71_RS04760at 1037.740 kb on - strand, within QEN71_RS04760at 1037.907 kb on + strand, within QEN71_RS04760at 1037.907 kb on + strand, within QEN71_RS04760at 1037.908 kb on - strand, within QEN71_RS04760at 1037.908 kb on - strand, within QEN71_RS04760at 1038.210 kb on - strandat 1038.285 kb on - strandat 1038.287 kb on + strandat 1038.288 kb on - strandat 1038.288 kb on - strandat 1038.337 kb on + strandat 1038.337 kb on + strandat 1038.337 kb on + strandat 1038.337 kb on + strandat 1038.338 kb on - strandat 1038.338 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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1,036,113 + +0.2
1,036,113 + +0.0
1,036,114 - -0.6
1,036,114 - +0.2
1,036,114 - -1.1
1,036,114 - -1.8
1,036,114 - -0.5
1,036,114 - +0.2
1,036,556 - -0.8
1,036,556 - -0.2
1,037,330 + -0.2
1,037,330 + -1.1
1,037,330 + +0.8
1,037,331 - +0.6
1,037,331 - -0.7
1,037,331 - +0.3
1,037,331 - +1.4
1,037,331 - -0.3
1,037,331 - +0.8
1,037,370 - +0.9
1,037,370 - -1.0
1,037,370 - -0.9
1,037,385 + +0.5
1,037,385 + -1.5
1,037,385 + +1.9
1,037,386 - +0.1
1,037,386 - +0.3
1,037,386 - +1.0
1,037,386 - -0.2
1,037,386 - -1.5
1,037,386 - +0.4
1,037,386 - -0.8
1,037,386 - -1.3
1,037,386 - -1.0
1,037,415 + +0.7
1,037,415 + +0.9
1,037,415 + +0.3
1,037,415 + +1.2
1,037,415 + +1.0
1,037,415 + +0.5
1,037,415 + +0.1
1,037,415 + +0.5
1,037,415 + -0.1
1,037,415 + -0.2
1,037,415 + +0.4
1,037,415 + +2.0
1,037,415 + +1.3
1,037,415 + +0.8
1,037,415 + +0.9
1,037,415 + +0.7
1,037,415 + -1.0
1,037,415 + +0.6
1,037,416 - -1.4
1,037,416 - -0.4
1,037,416 - -1.5
1,037,416 - +0.9
1,037,416 - -1.3
1,037,416 - +0.4
1,037,416 - -1.0
1,037,416 - -1.0
1,037,416 - +0.9
1,037,416 - -0.6
1,037,416 - +0.4
1,037,416 - -1.2
1,037,416 - -0.3
1,037,487 + QEN71_RS04760 0.15 -0.1
1,037,487 + QEN71_RS04760 0.15 -1.0
1,037,487 + QEN71_RS04760 0.15 +0.1
1,037,487 + QEN71_RS04760 0.15 -0.8
1,037,487 + QEN71_RS04760 0.15 +0.8
1,037,487 + QEN71_RS04760 0.15 +0.5
1,037,487 + QEN71_RS04760 0.15 -0.2
1,037,487 + QEN71_RS04760 0.15 +0.3
1,037,487 + QEN71_RS04760 0.15 +0.7
1,037,487 + QEN71_RS04760 0.15 +0.8
1,037,487 + QEN71_RS04760 0.15 -0.5
1,037,487 + QEN71_RS04760 0.15 +0.2
1,037,487 + QEN71_RS04760 0.15 -0.4
1,037,487 + QEN71_RS04760 0.15 -0.7
1,037,487 + QEN71_RS04760 0.15 +0.0
1,037,487 + QEN71_RS04760 0.15 +0.7
1,037,487 + QEN71_RS04760 0.15 -1.3
1,037,488 - QEN71_RS04760 0.15 +1.6
1,037,488 - QEN71_RS04760 0.15 +0.1
1,037,488 - QEN71_RS04760 0.15 -0.1
1,037,488 - QEN71_RS04760 0.15 +0.4
1,037,488 - QEN71_RS04760 0.15 -1.3
1,037,488 - QEN71_RS04760 0.15 -0.5
1,037,488 - QEN71_RS04760 0.15 -0.2
1,037,488 - QEN71_RS04760 0.15 +0.7
1,037,488 - QEN71_RS04760 0.15 +0.0
1,037,488 - QEN71_RS04760 0.15 -0.6
1,037,488 - QEN71_RS04760 0.15 -2.3
1,037,519 + QEN71_RS04760 0.19 +0.4
1,037,519 + QEN71_RS04760 0.19 -0.5
1,037,519 + QEN71_RS04760 0.19 +0.4
1,037,520 - QEN71_RS04760 0.19 +1.7
1,037,520 - QEN71_RS04760 0.19 -1.0
1,037,524 + QEN71_RS04760 0.19 -0.8
1,037,525 - QEN71_RS04760 0.19 -0.6
1,037,525 - QEN71_RS04760 0.19 -0.9
1,037,525 - QEN71_RS04760 0.19 -0.6
1,037,599 + QEN71_RS04760 0.28 -1.2
1,037,599 + QEN71_RS04760 0.28 +0.7
1,037,600 - QEN71_RS04760 0.29 -0.9
1,037,607 + QEN71_RS04760 0.29 -0.4
1,037,607 + QEN71_RS04760 0.29 -0.6
1,037,607 + QEN71_RS04760 0.29 -0.3
1,037,607 + QEN71_RS04760 0.29 -1.5
1,037,607 + QEN71_RS04760 0.29 -1.5
1,037,608 - QEN71_RS04760 0.30 -0.8
1,037,608 - QEN71_RS04760 0.30 +0.5
1,037,608 - QEN71_RS04760 0.30 +0.6
1,037,608 - QEN71_RS04760 0.30 +1.0
1,037,720 + QEN71_RS04760 0.44 -0.1
1,037,720 + QEN71_RS04760 0.44 -2.5
1,037,720 + QEN71_RS04760 0.44 -1.3
1,037,720 + QEN71_RS04760 0.44 +0.7
1,037,720 + QEN71_RS04760 0.44 +0.8
1,037,720 + QEN71_RS04760 0.44 -1.1
1,037,720 + QEN71_RS04760 0.44 +0.2
1,037,721 - QEN71_RS04760 0.44 +0.0
1,037,721 - QEN71_RS04760 0.44 -2.0
1,037,721 - QEN71_RS04760 0.44 +0.1
1,037,721 - QEN71_RS04760 0.44 -1.0
1,037,721 - QEN71_RS04760 0.44 -1.4
1,037,721 - QEN71_RS04760 0.44 -0.9
1,037,721 - QEN71_RS04760 0.44 +0.6
1,037,732 + QEN71_RS04760 0.45 +0.4
1,037,732 + QEN71_RS04760 0.45 -0.4
1,037,732 + QEN71_RS04760 0.45 -0.2
1,037,739 + QEN71_RS04760 0.46 +0.5
1,037,739 + QEN71_RS04760 0.46 -0.5
1,037,739 + QEN71_RS04760 0.46 +0.5
1,037,740 - QEN71_RS04760 0.46 +0.9
1,037,740 - QEN71_RS04760 0.46 -0.1
1,037,740 - QEN71_RS04760 0.46 -1.2
1,037,740 - QEN71_RS04760 0.46 -1.5
1,037,907 + QEN71_RS04760 0.67 +0.0
1,037,907 + QEN71_RS04760 0.67 -0.6
1,037,908 - QEN71_RS04760 0.67 -0.6
1,037,908 - QEN71_RS04760 0.67 -0.4
1,038,210 - -0.3
1,038,285 - -1.6
1,038,287 + +1.3
1,038,288 - -0.9
1,038,288 - -1.2
1,038,337 + -1.9
1,038,337 + -1.5
1,038,337 + -1.5
1,038,337 + -0.9
1,038,338 - -0.9
1,038,338 - +0.2

Or see this region's nucleotide sequence