Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS17730

Experiment: planktonic; Day1; NLDM; Aluminum chloride 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS17725 and LRK53_RS17730 are separated by 12 nucleotidesLRK53_RS17730 and LRK53_RS17735 are separated by 100 nucleotides LRK53_RS17725: LRK53_RS17725 - substrate-binding domain-containing protein, at 3,887,245 to 3,888,585 _RS17725 LRK53_RS17730: LRK53_RS17730 - HAD family hydrolase, at 3,888,598 to 3,889,296 _RS17730 LRK53_RS17735: LRK53_RS17735 - leucyl aminopeptidase family protein, at 3,889,397 to 3,890,788 _RS17735 Position (kb) 3888 3889 3890Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3887.656 kb on + strand, within LRK53_RS17725at 3887.656 kb on + strand, within LRK53_RS17725at 3887.656 kb on + strand, within LRK53_RS17725at 3887.657 kb on - strand, within LRK53_RS17725at 3887.657 kb on - strand, within LRK53_RS17725at 3887.657 kb on - strand, within LRK53_RS17725at 3887.657 kb on - strand, within LRK53_RS17725at 3887.657 kb on - strand, within LRK53_RS17725at 3887.657 kb on - strand, within LRK53_RS17725at 3887.659 kb on + strand, within LRK53_RS17725at 3887.749 kb on + strand, within LRK53_RS17725at 3887.749 kb on + strand, within LRK53_RS17725at 3887.749 kb on + strand, within LRK53_RS17725at 3887.750 kb on - strand, within LRK53_RS17725at 3887.809 kb on + strand, within LRK53_RS17725at 3887.809 kb on + strand, within LRK53_RS17725at 3887.810 kb on - strand, within LRK53_RS17725at 3887.810 kb on - strand, within LRK53_RS17725at 3887.983 kb on + strand, within LRK53_RS17725at 3887.984 kb on - strand, within LRK53_RS17725at 3888.208 kb on + strand, within LRK53_RS17725at 3888.208 kb on + strand, within LRK53_RS17725at 3888.208 kb on + strand, within LRK53_RS17725at 3888.375 kb on + strand, within LRK53_RS17725at 3888.375 kb on + strand, within LRK53_RS17725at 3888.375 kb on + strand, within LRK53_RS17725at 3888.376 kb on - strand, within LRK53_RS17725at 3888.376 kb on - strand, within LRK53_RS17725at 3888.448 kb on + strand, within LRK53_RS17725at 3888.448 kb on + strand, within LRK53_RS17725at 3888.449 kb on - strand, within LRK53_RS17725at 3888.449 kb on - strand, within LRK53_RS17725at 3888.583 kb on + strandat 3888.584 kb on - strandat 3888.584 kb on - strandat 3888.845 kb on + strand, within LRK53_RS17730at 3888.845 kb on + strand, within LRK53_RS17730at 3888.845 kb on + strand, within LRK53_RS17730at 3888.845 kb on + strand, within LRK53_RS17730at 3888.845 kb on + strand, within LRK53_RS17730at 3888.846 kb on - strand, within LRK53_RS17730at 3888.846 kb on - strand, within LRK53_RS17730at 3888.860 kb on + strand, within LRK53_RS17730at 3888.861 kb on - strand, within LRK53_RS17730at 3888.861 kb on - strand, within LRK53_RS17730at 3888.869 kb on + strand, within LRK53_RS17730at 3888.880 kb on + strand, within LRK53_RS17730at 3888.880 kb on + strand, within LRK53_RS17730at 3888.880 kb on + strand, within LRK53_RS17730at 3888.880 kb on + strand, within LRK53_RS17730at 3888.880 kb on + strand, within LRK53_RS17730at 3888.881 kb on - strand, within LRK53_RS17730at 3888.881 kb on - strand, within LRK53_RS17730at 3888.881 kb on - strand, within LRK53_RS17730at 3888.881 kb on - strand, within LRK53_RS17730at 3889.142 kb on + strand, within LRK53_RS17730at 3889.142 kb on + strand, within LRK53_RS17730at 3889.143 kb on - strand, within LRK53_RS17730at 3889.176 kb on + strand, within LRK53_RS17730at 3889.308 kb on + strandat 3889.308 kb on + strandat 3889.308 kb on + strandat 3889.308 kb on + strandat 3889.308 kb on + strandat 3889.309 kb on - strandat 3889.309 kb on - strandat 3889.309 kb on - strandat 3889.309 kb on - strandat 3889.309 kb on - strandat 3889.309 kb on - strandat 3889.469 kb on + strandat 3889.469 kb on + strandat 3889.470 kb on - strandat 3889.470 kb on - strandat 3889.550 kb on + strand, within LRK53_RS17735at 3889.550 kb on + strand, within LRK53_RS17735at 3889.550 kb on + strand, within LRK53_RS17735at 3889.550 kb on + strand, within LRK53_RS17735at 3889.550 kb on + strand, within LRK53_RS17735at 3889.550 kb on + strand, within LRK53_RS17735at 3889.551 kb on - strand, within LRK53_RS17735at 3889.551 kb on - strand, within LRK53_RS17735at 3889.551 kb on - strand, within LRK53_RS17735at 3889.551 kb on - strand, within LRK53_RS17735at 3889.551 kb on - strand, within LRK53_RS17735at 3889.664 kb on + strand, within LRK53_RS17735at 3889.664 kb on + strand, within LRK53_RS17735at 3889.664 kb on + strand, within LRK53_RS17735at 3889.664 kb on + strand, within LRK53_RS17735at 3889.664 kb on + strand, within LRK53_RS17735at 3889.664 kb on + strand, within LRK53_RS17735at 3889.664 kb on + strand, within LRK53_RS17735at 3889.664 kb on + strand, within LRK53_RS17735at 3889.664 kb on + strand, within LRK53_RS17735at 3889.664 kb on + strand, within LRK53_RS17735at 3889.664 kb on + strand, within LRK53_RS17735at 3889.664 kb on + strand, within LRK53_RS17735at 3889.664 kb on + strand, within LRK53_RS17735at 3889.664 kb on + strand, within LRK53_RS17735at 3889.664 kb on + strand, within LRK53_RS17735at 3889.664 kb on + strand, within LRK53_RS17735at 3889.664 kb on + strand, within LRK53_RS17735at 3889.664 kb on + strand, within LRK53_RS17735at 3889.664 kb on + strand, within LRK53_RS17735at 3889.664 kb on + strand, within LRK53_RS17735at 3889.664 kb on + strand, within LRK53_RS17735at 3889.664 kb on + strand, within LRK53_RS17735at 3889.664 kb on + strand, within LRK53_RS17735at 3889.664 kb on + strand, within LRK53_RS17735at 3889.665 kb on - strand, within LRK53_RS17735at 3889.665 kb on - strand, within LRK53_RS17735at 3889.665 kb on - strand, within LRK53_RS17735at 3889.665 kb on - strand, within LRK53_RS17735at 3889.665 kb on - strand, within LRK53_RS17735at 3889.665 kb on - strand, within LRK53_RS17735at 3889.665 kb on - strand, within LRK53_RS17735at 3889.665 kb on - strand, within LRK53_RS17735at 3889.665 kb on - strand, within LRK53_RS17735at 3889.665 kb on - strand, within LRK53_RS17735at 3889.665 kb on - strand, within LRK53_RS17735at 3889.665 kb on - strand, within LRK53_RS17735at 3889.665 kb on - strand, within LRK53_RS17735at 3889.665 kb on - strand, within LRK53_RS17735at 3889.665 kb on - strand, within LRK53_RS17735at 3889.665 kb on - strand, within LRK53_RS17735at 3889.665 kb on - strand, within LRK53_RS17735at 3889.665 kb on - strand, within LRK53_RS17735at 3889.665 kb on - strand, within LRK53_RS17735at 3889.665 kb on - strand, within LRK53_RS17735at 3889.734 kb on - strand, within LRK53_RS17735at 3889.734 kb on - strand, within LRK53_RS17735at 3890.277 kb on + strand, within LRK53_RS17735at 3890.277 kb on + strand, within LRK53_RS17735at 3890.277 kb on + strand, within LRK53_RS17735at 3890.277 kb on + strand, within LRK53_RS17735at 3890.278 kb on - strand, within LRK53_RS17735at 3890.278 kb on - strand, within LRK53_RS17735at 3890.278 kb on - strand, within LRK53_RS17735at 3890.278 kb on - strand, within LRK53_RS17735

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Per-strain Table

Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Aluminum chloride 1mM
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3,887,656 + LRK53_RS17725 0.31 -0.3
3,887,656 + LRK53_RS17725 0.31 -2.0
3,887,656 + LRK53_RS17725 0.31 -0.5
3,887,657 - LRK53_RS17725 0.31 -0.3
3,887,657 - LRK53_RS17725 0.31 +0.8
3,887,657 - LRK53_RS17725 0.31 -0.2
3,887,657 - LRK53_RS17725 0.31 -0.0
3,887,657 - LRK53_RS17725 0.31 -0.2
3,887,657 - LRK53_RS17725 0.31 +0.1
3,887,659 + LRK53_RS17725 0.31 -1.2
3,887,749 + LRK53_RS17725 0.38 -0.5
3,887,749 + LRK53_RS17725 0.38 -0.2
3,887,749 + LRK53_RS17725 0.38 -0.0
3,887,750 - LRK53_RS17725 0.38 -0.2
3,887,809 + LRK53_RS17725 0.42 -0.0
3,887,809 + LRK53_RS17725 0.42 -0.3
3,887,810 - LRK53_RS17725 0.42 -0.5
3,887,810 - LRK53_RS17725 0.42 -0.1
3,887,983 + LRK53_RS17725 0.55 +0.7
3,887,984 - LRK53_RS17725 0.55 -0.3
3,888,208 + LRK53_RS17725 0.72 -2.4
3,888,208 + LRK53_RS17725 0.72 -0.0
3,888,208 + LRK53_RS17725 0.72 -0.0
3,888,375 + LRK53_RS17725 0.84 +0.3
3,888,375 + LRK53_RS17725 0.84 +0.4
3,888,375 + LRK53_RS17725 0.84 -0.5
3,888,376 - LRK53_RS17725 0.84 +1.3
3,888,376 - LRK53_RS17725 0.84 -0.3
3,888,448 + LRK53_RS17725 0.90 +0.2
3,888,448 + LRK53_RS17725 0.90 +0.3
3,888,449 - LRK53_RS17725 0.90 +0.5
3,888,449 - LRK53_RS17725 0.90 -0.0
3,888,583 + -1.9
3,888,584 - -2.2
3,888,584 - -0.6
3,888,845 + LRK53_RS17730 0.35 -0.9
3,888,845 + LRK53_RS17730 0.35 -0.7
3,888,845 + LRK53_RS17730 0.35 +0.6
3,888,845 + LRK53_RS17730 0.35 +2.1
3,888,845 + LRK53_RS17730 0.35 +0.6
3,888,846 - LRK53_RS17730 0.35 -1.4
3,888,846 - LRK53_RS17730 0.35 -0.5
3,888,860 + LRK53_RS17730 0.37 -1.0
3,888,861 - LRK53_RS17730 0.38 +0.3
3,888,861 - LRK53_RS17730 0.38 -0.5
3,888,869 + LRK53_RS17730 0.39 -0.2
3,888,880 + LRK53_RS17730 0.40 +0.8
3,888,880 + LRK53_RS17730 0.40 +0.5
3,888,880 + LRK53_RS17730 0.40 -3.0
3,888,880 + LRK53_RS17730 0.40 -0.4
3,888,880 + LRK53_RS17730 0.40 -0.3
3,888,881 - LRK53_RS17730 0.40 +0.1
3,888,881 - LRK53_RS17730 0.40 +0.7
3,888,881 - LRK53_RS17730 0.40 -0.9
3,888,881 - LRK53_RS17730 0.40 -0.7
3,889,142 + LRK53_RS17730 0.78 +0.1
3,889,142 + LRK53_RS17730 0.78 +0.4
3,889,143 - LRK53_RS17730 0.78 +1.1
3,889,176 + LRK53_RS17730 0.83 -0.3
3,889,308 + -1.3
3,889,308 + -0.3
3,889,308 + -0.4
3,889,308 + -0.0
3,889,308 + -0.0
3,889,309 - +0.3
3,889,309 - -0.4
3,889,309 - -0.6
3,889,309 - +1.5
3,889,309 - -0.0
3,889,309 - -0.0
3,889,469 + -1.0
3,889,469 + -0.7
3,889,470 - +0.3
3,889,470 - +1.1
3,889,550 + LRK53_RS17735 0.11 -0.7
3,889,550 + LRK53_RS17735 0.11 -1.5
3,889,550 + LRK53_RS17735 0.11 -0.3
3,889,550 + LRK53_RS17735 0.11 -1.5
3,889,550 + LRK53_RS17735 0.11 +0.2
3,889,550 + LRK53_RS17735 0.11 +0.0
3,889,551 - LRK53_RS17735 0.11 +1.4
3,889,551 - LRK53_RS17735 0.11 -0.3
3,889,551 - LRK53_RS17735 0.11 -0.9
3,889,551 - LRK53_RS17735 0.11 +0.5
3,889,551 - LRK53_RS17735 0.11 -0.2
3,889,664 + LRK53_RS17735 0.19 -0.0
3,889,664 + LRK53_RS17735 0.19 -0.7
3,889,664 + LRK53_RS17735 0.19 -1.5
3,889,664 + LRK53_RS17735 0.19 -1.4
3,889,664 + LRK53_RS17735 0.19 -0.9
3,889,664 + LRK53_RS17735 0.19 -1.9
3,889,664 + LRK53_RS17735 0.19 +0.0
3,889,664 + LRK53_RS17735 0.19 +0.5
3,889,664 + LRK53_RS17735 0.19 -0.0
3,889,664 + LRK53_RS17735 0.19 -0.5
3,889,664 + LRK53_RS17735 0.19 -0.8
3,889,664 + LRK53_RS17735 0.19 -1.4
3,889,664 + LRK53_RS17735 0.19 +0.2
3,889,664 + LRK53_RS17735 0.19 -1.5
3,889,664 + LRK53_RS17735 0.19 +1.3
3,889,664 + LRK53_RS17735 0.19 -0.3
3,889,664 + LRK53_RS17735 0.19 -0.6
3,889,664 + LRK53_RS17735 0.19 -2.3
3,889,664 + LRK53_RS17735 0.19 -0.2
3,889,664 + LRK53_RS17735 0.19 -0.8
3,889,664 + LRK53_RS17735 0.19 -0.8
3,889,664 + LRK53_RS17735 0.19 -0.7
3,889,664 + LRK53_RS17735 0.19 -0.1
3,889,664 + LRK53_RS17735 0.19 -0.8
3,889,665 - LRK53_RS17735 0.19 +0.7
3,889,665 - LRK53_RS17735 0.19 +2.1
3,889,665 - LRK53_RS17735 0.19 +1.1
3,889,665 - LRK53_RS17735 0.19 +0.1
3,889,665 - LRK53_RS17735 0.19 +1.3
3,889,665 - LRK53_RS17735 0.19 +0.8
3,889,665 - LRK53_RS17735 0.19 +0.1
3,889,665 - LRK53_RS17735 0.19 -1.0
3,889,665 - LRK53_RS17735 0.19 -2.5
3,889,665 - LRK53_RS17735 0.19 +0.4
3,889,665 - LRK53_RS17735 0.19 +1.5
3,889,665 - LRK53_RS17735 0.19 -1.5
3,889,665 - LRK53_RS17735 0.19 -0.5
3,889,665 - LRK53_RS17735 0.19 -0.3
3,889,665 - LRK53_RS17735 0.19 -0.2
3,889,665 - LRK53_RS17735 0.19 -0.9
3,889,665 - LRK53_RS17735 0.19 +0.2
3,889,665 - LRK53_RS17735 0.19 -1.4
3,889,665 - LRK53_RS17735 0.19 -0.8
3,889,665 - LRK53_RS17735 0.19 +0.5
3,889,734 - LRK53_RS17735 0.24 +0.1
3,889,734 - LRK53_RS17735 0.24 -0.0
3,890,277 + LRK53_RS17735 0.63 -0.6
3,890,277 + LRK53_RS17735 0.63 -0.5
3,890,277 + LRK53_RS17735 0.63 -0.0
3,890,277 + LRK53_RS17735 0.63 +1.1
3,890,278 - LRK53_RS17735 0.63 +0.1
3,890,278 - LRK53_RS17735 0.63 -2.0
3,890,278 - LRK53_RS17735 0.63 +0.2
3,890,278 - LRK53_RS17735 0.63 -2.4

Or see this region's nucleotide sequence