Experiment: planktonic; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03870 and LRK53_RS03875 are separated by 58 nucleotides LRK53_RS03875 and LRK53_RS03880 overlap by 4 nucleotides LRK53_RS03880 and LRK53_RS03885 overlap by 14 nucleotides
LRK53_RS03870: LRK53_RS03870 - DUF3375 domain-containing protein, at 906,451 to 907,914
_RS03870
LRK53_RS03875: LRK53_RS03875 - DUF4194 domain-containing protein, at 907,973 to 908,590
_RS03875
LRK53_RS03880: LRK53_RS03880 - ATP-binding protein, at 908,587 to 911,958
_RS03880
LRK53_RS03885: LRK53_RS03885 - DUF3322 and DUF2220 domain-containing protein, at 911,945 to 913,099
_RS03885
Position (kb) 908
909
910
911
912 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 907.735 kb on + strand, within LRK53_RS03870 at 907.735 kb on + strand, within LRK53_RS03870 at 907.735 kb on + strand, within LRK53_RS03870 at 907.736 kb on - strand, within LRK53_RS03870 at 907.771 kb on + strand at 907.771 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.879 kb on + strand at 907.880 kb on - strand at 907.880 kb on - strand at 907.880 kb on - strand at 907.880 kb on - strand at 907.880 kb on - strand at 907.880 kb on - strand at 907.880 kb on - strand at 907.880 kb on - strand at 907.880 kb on - strand at 908.345 kb on + strand, within LRK53_RS03875 at 908.345 kb on + strand, within LRK53_RS03875 at 908.346 kb on - strand, within LRK53_RS03875 at 908.346 kb on - strand, within LRK53_RS03875 at 908.346 kb on - strand, within LRK53_RS03875 at 908.525 kb on + strand, within LRK53_RS03875 at 908.525 kb on + strand, within LRK53_RS03875 at 908.525 kb on + strand, within LRK53_RS03875 at 908.526 kb on - strand, within LRK53_RS03875 at 908.610 kb on + strand at 908.610 kb on + strand at 908.610 kb on + strand at 908.610 kb on + strand at 908.610 kb on + strand at 908.610 kb on + strand at 908.611 kb on - strand at 908.611 kb on - strand at 908.675 kb on + strand at 908.675 kb on + strand at 908.675 kb on + strand at 908.675 kb on + strand at 908.675 kb on + strand at 908.676 kb on - strand at 908.676 kb on - strand at 908.676 kb on - strand at 908.676 kb on - strand at 908.875 kb on + strand at 908.875 kb on + strand at 908.875 kb on + strand at 908.875 kb on + strand at 908.875 kb on + strand at 908.875 kb on + strand at 908.875 kb on + strand at 908.876 kb on - strand at 908.876 kb on - strand at 908.876 kb on - strand at 908.876 kb on - strand at 908.876 kb on - strand at 908.935 kb on + strand, within LRK53_RS03880 at 908.936 kb on - strand, within LRK53_RS03880 at 908.936 kb on - strand, within LRK53_RS03880 at 908.936 kb on - strand, within LRK53_RS03880 at 908.936 kb on - strand, within LRK53_RS03880 at 909.064 kb on + strand, within LRK53_RS03880 at 909.064 kb on + strand, within LRK53_RS03880 at 909.064 kb on + strand, within LRK53_RS03880 at 909.064 kb on + strand, within LRK53_RS03880 at 909.064 kb on + strand, within LRK53_RS03880 at 909.064 kb on + strand, within LRK53_RS03880 at 909.064 kb on + strand, within LRK53_RS03880 at 909.065 kb on - strand, within LRK53_RS03880 at 909.065 kb on - strand, within LRK53_RS03880 at 909.065 kb on - strand, within LRK53_RS03880 at 909.065 kb on - strand, within LRK53_RS03880 at 909.065 kb on - strand, within LRK53_RS03880 at 909.065 kb on - strand, within LRK53_RS03880 at 909.065 kb on - strand, within LRK53_RS03880 at 909.184 kb on + strand, within LRK53_RS03880 at 909.185 kb on - strand, within LRK53_RS03880 at 909.209 kb on + strand, within LRK53_RS03880 at 909.209 kb on + strand, within LRK53_RS03880 at 909.210 kb on - strand, within LRK53_RS03880 at 909.210 kb on - strand, within LRK53_RS03880 at 909.210 kb on - strand, within LRK53_RS03880 at 909.210 kb on - strand, within LRK53_RS03880 at 909.973 kb on + strand, within LRK53_RS03880 at 909.973 kb on + strand, within LRK53_RS03880 at 909.973 kb on + strand, within LRK53_RS03880 at 909.973 kb on + strand, within LRK53_RS03880 at 909.973 kb on + strand, within LRK53_RS03880 at 909.973 kb on + strand, within LRK53_RS03880 at 909.973 kb on + strand, within LRK53_RS03880 at 909.973 kb on + strand, within LRK53_RS03880 at 909.973 kb on + strand, within LRK53_RS03880 at 909.973 kb on + strand, within LRK53_RS03880 at 909.973 kb on + strand, within LRK53_RS03880 at 909.973 kb on + strand, within LRK53_RS03880 at 909.974 kb on - strand, within LRK53_RS03880 at 909.974 kb on - strand, within LRK53_RS03880 at 909.974 kb on - strand, within LRK53_RS03880 at 910.058 kb on + strand, within LRK53_RS03880 at 910.059 kb on - strand, within LRK53_RS03880 at 910.144 kb on + strand, within LRK53_RS03880 at 910.144 kb on + strand, within LRK53_RS03880 at 910.144 kb on + strand, within LRK53_RS03880 at 910.144 kb on + strand, within LRK53_RS03880 at 910.145 kb on - strand, within LRK53_RS03880 at 910.145 kb on - strand, within LRK53_RS03880 at 910.198 kb on + strand, within LRK53_RS03880 at 910.198 kb on + strand, within LRK53_RS03880 at 910.198 kb on + strand, within LRK53_RS03880 at 910.198 kb on + strand, within LRK53_RS03880 at 910.198 kb on + strand, within LRK53_RS03880 at 910.198 kb on + strand, within LRK53_RS03880 at 910.198 kb on + strand, within LRK53_RS03880 at 910.198 kb on + strand, within LRK53_RS03880 at 910.198 kb on + strand, within LRK53_RS03880 at 910.198 kb on + strand, within LRK53_RS03880 at 910.199 kb on - strand, within LRK53_RS03880 at 910.199 kb on - strand, within LRK53_RS03880 at 910.199 kb on - strand, within LRK53_RS03880 at 910.199 kb on - strand, within LRK53_RS03880 at 910.324 kb on + strand, within LRK53_RS03880 at 910.325 kb on - strand, within LRK53_RS03880 at 910.330 kb on + strand, within LRK53_RS03880 at 910.330 kb on + strand, within LRK53_RS03880 at 910.330 kb on + strand, within LRK53_RS03880 at 910.331 kb on - strand, within LRK53_RS03880 at 910.331 kb on - strand, within LRK53_RS03880 at 910.331 kb on - strand, within LRK53_RS03880 at 910.331 kb on - strand, within LRK53_RS03880 at 910.331 kb on - strand, within LRK53_RS03880 at 910.331 kb on - strand, within LRK53_RS03880 at 910.463 kb on + strand, within LRK53_RS03880 at 910.498 kb on + strand, within LRK53_RS03880 at 910.498 kb on + strand, within LRK53_RS03880 at 910.498 kb on + strand, within LRK53_RS03880 at 910.498 kb on + strand, within LRK53_RS03880 at 910.498 kb on + strand, within LRK53_RS03880 at 910.498 kb on + strand, within LRK53_RS03880 at 910.498 kb on + strand, within LRK53_RS03880 at 910.498 kb on + strand, within LRK53_RS03880 at 910.498 kb on + strand, within LRK53_RS03880 at 910.498 kb on + strand, within LRK53_RS03880 at 910.498 kb on + strand, within LRK53_RS03880 at 910.498 kb on + strand, within LRK53_RS03880 at 910.499 kb on - strand, within LRK53_RS03880 at 910.499 kb on - strand, within LRK53_RS03880 at 910.499 kb on - strand, within LRK53_RS03880 at 910.499 kb on - strand, within LRK53_RS03880 at 910.499 kb on - strand, within LRK53_RS03880 at 910.758 kb on + strand, within LRK53_RS03880 at 910.758 kb on + strand, within LRK53_RS03880 at 910.758 kb on + strand, within LRK53_RS03880 at 910.758 kb on + strand, within LRK53_RS03880 at 910.758 kb on + strand, within LRK53_RS03880 at 910.759 kb on - strand, within LRK53_RS03880 at 910.759 kb on - strand, within LRK53_RS03880 at 910.809 kb on + strand, within LRK53_RS03880 at 910.809 kb on + strand, within LRK53_RS03880 at 910.809 kb on + strand, within LRK53_RS03880 at 910.810 kb on - strand, within LRK53_RS03880 at 910.810 kb on - strand, within LRK53_RS03880 at 910.810 kb on - strand, within LRK53_RS03880 at 910.810 kb on - strand, within LRK53_RS03880 at 911.578 kb on + strand, within LRK53_RS03880 at 911.578 kb on + strand, within LRK53_RS03880 at 911.689 kb on + strand at 911.893 kb on + strand at 911.893 kb on + strand at 911.894 kb on - strand at 912.042 kb on + strand at 912.042 kb on + strand at 912.042 kb on + strand at 912.043 kb on - strand at 912.324 kb on - strand, within LRK53_RS03885 at 912.324 kb on - strand, within LRK53_RS03885 at 912.324 kb on - strand, within LRK53_RS03885 at 912.324 kb on - strand, within LRK53_RS03885 at 912.324 kb on - strand, within LRK53_RS03885 at 912.749 kb on + strand, within LRK53_RS03885 at 912.750 kb on - strand, within LRK53_RS03885 at 912.774 kb on + strand, within LRK53_RS03885 at 912.774 kb on + strand, within LRK53_RS03885 at 912.774 kb on + strand, within LRK53_RS03885 at 912.774 kb on + strand, within LRK53_RS03885 at 912.774 kb on + strand, within LRK53_RS03885 at 912.774 kb on + strand, within LRK53_RS03885 at 912.775 kb on - strand, within LRK53_RS03885 at 912.775 kb on - strand, within LRK53_RS03885 at 912.775 kb on - strand, within LRK53_RS03885 at 912.775 kb on - strand, within LRK53_RS03885 at 912.775 kb on - strand, within LRK53_RS03885 at 912.775 kb on - strand, within LRK53_RS03885 at 912.806 kb on + strand, within LRK53_RS03885 at 912.806 kb on + strand, within LRK53_RS03885 at 912.806 kb on + strand, within LRK53_RS03885 at 912.807 kb on - strand, within LRK53_RS03885 at 912.807 kb on - strand, within LRK53_RS03885 at 912.807 kb on - strand, within LRK53_RS03885 at 912.807 kb on - strand, within LRK53_RS03885 at 912.807 kb on - strand, within LRK53_RS03885
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Aluminum chloride 1mM remove 907,735 + LRK53_RS03870 0.88 +1.6 907,735 + LRK53_RS03870 0.88 -0.4 907,735 + LRK53_RS03870 0.88 +0.5 907,736 - LRK53_RS03870 0.88 -0.9 907,771 + +2.0 907,771 + -0.1 907,879 + +1.3 907,879 + -0.2 907,879 + -1.0 907,879 + +0.1 907,879 + -1.3 907,879 + -0.9 907,879 + +0.2 907,879 + -0.1 907,879 + +2.6 907,879 + -0.7 907,879 + -1.0 907,879 + -1.1 907,880 - -1.4 907,880 - -0.7 907,880 - -2.2 907,880 - -0.5 907,880 - -1.3 907,880 - +0.5 907,880 - -0.7 907,880 - -1.1 907,880 - -1.0 908,345 + LRK53_RS03875 0.60 -0.7 908,345 + LRK53_RS03875 0.60 +0.2 908,346 - LRK53_RS03875 0.60 -0.1 908,346 - LRK53_RS03875 0.60 -1.9 908,346 - LRK53_RS03875 0.60 +0.8 908,525 + LRK53_RS03875 0.89 -1.2 908,525 + LRK53_RS03875 0.89 -1.8 908,525 + LRK53_RS03875 0.89 -1.9 908,526 - LRK53_RS03875 0.89 -0.5 908,610 + -1.3 908,610 + -0.8 908,610 + +0.3 908,610 + -1.4 908,610 + +2.0 908,610 + -1.0 908,611 - -0.8 908,611 - -0.7 908,675 + -3.1 908,675 + -2.4 908,675 + -0.7 908,675 + -1.5 908,675 + -1.9 908,676 - +0.4 908,676 - -0.4 908,676 - -1.7 908,676 - +0.5 908,875 + +0.6 908,875 + -0.5 908,875 + -0.1 908,875 + -0.3 908,875 + +1.0 908,875 + -2.6 908,875 + -1.8 908,876 - -1.4 908,876 - -2.1 908,876 - +0.0 908,876 - -0.3 908,876 - -0.1 908,935 + LRK53_RS03880 0.10 +0.9 908,936 - LRK53_RS03880 0.10 -1.6 908,936 - LRK53_RS03880 0.10 +0.8 908,936 - LRK53_RS03880 0.10 -1.0 908,936 - LRK53_RS03880 0.10 -1.4 909,064 + LRK53_RS03880 0.14 -2.7 909,064 + LRK53_RS03880 0.14 +0.9 909,064 + LRK53_RS03880 0.14 -0.9 909,064 + LRK53_RS03880 0.14 -1.3 909,064 + LRK53_RS03880 0.14 -2.0 909,064 + LRK53_RS03880 0.14 -0.4 909,064 + LRK53_RS03880 0.14 -1.3 909,065 - LRK53_RS03880 0.14 -1.6 909,065 - LRK53_RS03880 0.14 -0.1 909,065 - LRK53_RS03880 0.14 -1.1 909,065 - LRK53_RS03880 0.14 +0.5 909,065 - LRK53_RS03880 0.14 +0.0 909,065 - LRK53_RS03880 0.14 -1.2 909,065 - LRK53_RS03880 0.14 +0.0 909,184 + LRK53_RS03880 0.18 +0.5 909,185 - LRK53_RS03880 0.18 -1.5 909,209 + LRK53_RS03880 0.18 -0.8 909,209 + LRK53_RS03880 0.18 -0.3 909,210 - LRK53_RS03880 0.18 +1.0 909,210 - LRK53_RS03880 0.18 +0.7 909,210 - LRK53_RS03880 0.18 -0.4 909,210 - LRK53_RS03880 0.18 -1.5 909,973 + LRK53_RS03880 0.41 -1.0 909,973 + LRK53_RS03880 0.41 +0.1 909,973 + LRK53_RS03880 0.41 -0.7 909,973 + LRK53_RS03880 0.41 +1.3 909,973 + LRK53_RS03880 0.41 -1.8 909,973 + LRK53_RS03880 0.41 -0.3 909,973 + LRK53_RS03880 0.41 -1.0 909,973 + LRK53_RS03880 0.41 -0.6 909,973 + LRK53_RS03880 0.41 -2.0 909,973 + LRK53_RS03880 0.41 -0.4 909,973 + LRK53_RS03880 0.41 -1.6 909,973 + LRK53_RS03880 0.41 +2.2 909,974 - LRK53_RS03880 0.41 -0.8 909,974 - LRK53_RS03880 0.41 -2.2 909,974 - LRK53_RS03880 0.41 -0.8 910,058 + LRK53_RS03880 0.44 +0.1 910,059 - LRK53_RS03880 0.44 -0.5 910,144 + LRK53_RS03880 0.46 -2.2 910,144 + LRK53_RS03880 0.46 +2.1 910,144 + LRK53_RS03880 0.46 -2.3 910,144 + LRK53_RS03880 0.46 -2.4 910,145 - LRK53_RS03880 0.46 +0.2 910,145 - LRK53_RS03880 0.46 -0.7 910,198 + LRK53_RS03880 0.48 -1.5 910,198 + LRK53_RS03880 0.48 -0.2 910,198 + LRK53_RS03880 0.48 -0.5 910,198 + LRK53_RS03880 0.48 +0.5 910,198 + LRK53_RS03880 0.48 -1.3 910,198 + LRK53_RS03880 0.48 -1.2 910,198 + LRK53_RS03880 0.48 -0.4 910,198 + LRK53_RS03880 0.48 +0.8 910,198 + LRK53_RS03880 0.48 -2.9 910,198 + LRK53_RS03880 0.48 -0.8 910,199 - LRK53_RS03880 0.48 -1.1 910,199 - LRK53_RS03880 0.48 -2.2 910,199 - LRK53_RS03880 0.48 -2.1 910,199 - LRK53_RS03880 0.48 -1.2 910,324 + LRK53_RS03880 0.52 -3.1 910,325 - LRK53_RS03880 0.52 +0.6 910,330 + LRK53_RS03880 0.52 -0.0 910,330 + LRK53_RS03880 0.52 -2.1 910,330 + LRK53_RS03880 0.52 -1.0 910,331 - LRK53_RS03880 0.52 -1.0 910,331 - LRK53_RS03880 0.52 -0.1 910,331 - LRK53_RS03880 0.52 -2.8 910,331 - LRK53_RS03880 0.52 -1.2 910,331 - LRK53_RS03880 0.52 -0.4 910,331 - LRK53_RS03880 0.52 -1.9 910,463 + LRK53_RS03880 0.56 -1.8 910,498 + LRK53_RS03880 0.57 -0.4 910,498 + LRK53_RS03880 0.57 -0.9 910,498 + LRK53_RS03880 0.57 +0.2 910,498 + LRK53_RS03880 0.57 -1.3 910,498 + LRK53_RS03880 0.57 +0.5 910,498 + LRK53_RS03880 0.57 -1.7 910,498 + LRK53_RS03880 0.57 +0.2 910,498 + LRK53_RS03880 0.57 -1.4 910,498 + LRK53_RS03880 0.57 -0.3 910,498 + LRK53_RS03880 0.57 -0.3 910,498 + LRK53_RS03880 0.57 -0.8 910,498 + LRK53_RS03880 0.57 -0.8 910,499 - LRK53_RS03880 0.57 -0.8 910,499 - LRK53_RS03880 0.57 -0.9 910,499 - LRK53_RS03880 0.57 -0.3 910,499 - LRK53_RS03880 0.57 -1.4 910,499 - LRK53_RS03880 0.57 +1.5 910,758 + LRK53_RS03880 0.64 -0.7 910,758 + LRK53_RS03880 0.64 -0.8 910,758 + LRK53_RS03880 0.64 -1.6 910,758 + LRK53_RS03880 0.64 -0.5 910,758 + LRK53_RS03880 0.64 -1.8 910,759 - LRK53_RS03880 0.64 -2.0 910,759 - LRK53_RS03880 0.64 -1.0 910,809 + LRK53_RS03880 0.66 -0.9 910,809 + LRK53_RS03880 0.66 -1.4 910,809 + LRK53_RS03880 0.66 -0.5 910,810 - LRK53_RS03880 0.66 +0.0 910,810 - LRK53_RS03880 0.66 -0.8 910,810 - LRK53_RS03880 0.66 -0.1 910,810 - LRK53_RS03880 0.66 -0.5 911,578 + LRK53_RS03880 0.89 +0.6 911,578 + LRK53_RS03880 0.89 -2.9 911,689 + -3.5 911,893 + -0.8 911,893 + -0.8 911,894 - +0.5 912,042 + +0.0 912,042 + -0.4 912,042 + +1.8 912,043 - -1.4 912,324 - LRK53_RS03885 0.33 -2.4 912,324 - LRK53_RS03885 0.33 +0.3 912,324 - LRK53_RS03885 0.33 -0.6 912,324 - LRK53_RS03885 0.33 -0.1 912,324 - LRK53_RS03885 0.33 -3.2 912,749 + LRK53_RS03885 0.70 +0.0 912,750 - LRK53_RS03885 0.70 -1.7 912,774 + LRK53_RS03885 0.72 -0.5 912,774 + LRK53_RS03885 0.72 -1.2 912,774 + LRK53_RS03885 0.72 -0.7 912,774 + LRK53_RS03885 0.72 +0.0 912,774 + LRK53_RS03885 0.72 +0.2 912,774 + LRK53_RS03885 0.72 -1.5 912,775 - LRK53_RS03885 0.72 +0.2 912,775 - LRK53_RS03885 0.72 -2.9 912,775 - LRK53_RS03885 0.72 -3.7 912,775 - LRK53_RS03885 0.72 -0.1 912,775 - LRK53_RS03885 0.72 -1.3 912,775 - LRK53_RS03885 0.72 -2.6 912,806 + LRK53_RS03885 0.75 -0.2 912,806 + LRK53_RS03885 0.75 -0.8 912,806 + LRK53_RS03885 0.75 -0.2 912,807 - LRK53_RS03885 0.75 -0.7 912,807 - LRK53_RS03885 0.75 +0.6 912,807 - LRK53_RS03885 0.75 -0.5 912,807 - LRK53_RS03885 0.75 -1.0 912,807 - LRK53_RS03885 0.75 +1.0
Or see this region's nucleotide sequence