Experiment: planktonic; Day1; NLDM; Aluminum chloride 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS01635 and LRK53_RS01640 are separated by 63 nucleotides LRK53_RS01640 and LRK53_RS01645 are separated by 237 nucleotides LRK53_RS01645 and LRK53_RS01650 are separated by 131 nucleotides
LRK53_RS01635: LRK53_RS01635 - DMT family transporter, at 386,321 to 387,217
_RS01635
LRK53_RS01640: LRK53_RS01640 - divalent-cation tolerance protein CutA, at 387,281 to 387,625
_RS01640
LRK53_RS01645: LRK53_RS01645 - co-chaperone GroES, at 387,863 to 388,156
_RS01645
LRK53_RS01650: LRK53_RS01650 - chaperonin GroEL, at 388,288 to 389,937
_RS01650
Position (kb) 387
388 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 386.283 kb on + strand at 386.284 kb on - strand at 386.284 kb on - strand at 386.284 kb on - strand at 386.284 kb on - strand at 386.314 kb on + strand at 386.322 kb on + strand at 386.322 kb on + strand at 386.322 kb on + strand at 386.322 kb on + strand at 386.322 kb on + strand at 386.322 kb on + strand at 386.322 kb on + strand at 386.322 kb on + strand at 386.322 kb on + strand at 386.322 kb on + strand at 386.322 kb on + strand at 386.322 kb on + strand at 386.323 kb on - strand at 386.323 kb on - strand at 386.323 kb on - strand at 386.323 kb on - strand at 386.323 kb on - strand at 386.323 kb on - strand at 386.488 kb on - strand, within LRK53_RS01635 at 386.547 kb on + strand, within LRK53_RS01635 at 386.547 kb on + strand, within LRK53_RS01635 at 386.547 kb on + strand, within LRK53_RS01635 at 386.547 kb on + strand, within LRK53_RS01635 at 386.547 kb on + strand, within LRK53_RS01635 at 386.548 kb on - strand, within LRK53_RS01635 at 386.548 kb on - strand, within LRK53_RS01635 at 386.548 kb on - strand, within LRK53_RS01635 at 386.548 kb on - strand, within LRK53_RS01635 at 386.548 kb on - strand, within LRK53_RS01635 at 386.548 kb on - strand, within LRK53_RS01635 at 386.548 kb on - strand, within LRK53_RS01635 at 386.548 kb on - strand, within LRK53_RS01635 at 386.548 kb on - strand, within LRK53_RS01635 at 386.721 kb on + strand, within LRK53_RS01635 at 386.721 kb on + strand, within LRK53_RS01635 at 386.721 kb on + strand, within LRK53_RS01635 at 386.721 kb on + strand, within LRK53_RS01635 at 386.721 kb on + strand, within LRK53_RS01635 at 386.721 kb on + strand, within LRK53_RS01635 at 386.721 kb on + strand, within LRK53_RS01635 at 386.721 kb on + strand, within LRK53_RS01635 at 386.721 kb on + strand, within LRK53_RS01635 at 386.721 kb on + strand, within LRK53_RS01635 at 386.721 kb on + strand, within LRK53_RS01635 at 386.721 kb on + strand, within LRK53_RS01635 at 386.721 kb on + strand, within LRK53_RS01635 at 386.721 kb on + strand, within LRK53_RS01635 at 386.721 kb on + strand, within LRK53_RS01635 at 386.721 kb on + strand, within LRK53_RS01635 at 386.721 kb on + strand, within LRK53_RS01635 at 386.721 kb on + strand, within LRK53_RS01635 at 386.721 kb on + strand, within LRK53_RS01635 at 386.721 kb on + strand, within LRK53_RS01635 at 386.722 kb on - strand, within LRK53_RS01635 at 386.722 kb on - strand, within LRK53_RS01635 at 386.722 kb on - strand, within LRK53_RS01635 at 386.722 kb on - strand, within LRK53_RS01635 at 386.722 kb on - strand, within LRK53_RS01635 at 386.722 kb on - strand, within LRK53_RS01635 at 386.722 kb on - strand, within LRK53_RS01635 at 386.722 kb on - strand, within LRK53_RS01635 at 386.722 kb on - strand, within LRK53_RS01635 at 386.722 kb on - strand, within LRK53_RS01635 at 386.722 kb on - strand, within LRK53_RS01635 at 386.722 kb on - strand, within LRK53_RS01635 at 386.722 kb on - strand, within LRK53_RS01635 at 386.722 kb on - strand, within LRK53_RS01635 at 386.722 kb on - strand, within LRK53_RS01635 at 386.722 kb on - strand, within LRK53_RS01635 at 386.722 kb on - strand, within LRK53_RS01635 at 386.722 kb on - strand, within LRK53_RS01635 at 386.722 kb on - strand, within LRK53_RS01635 at 386.739 kb on + strand, within LRK53_RS01635 at 386.739 kb on + strand, within LRK53_RS01635 at 386.740 kb on - strand, within LRK53_RS01635 at 386.740 kb on - strand, within LRK53_RS01635 at 386.740 kb on - strand, within LRK53_RS01635 at 386.740 kb on - strand, within LRK53_RS01635 at 386.740 kb on - strand, within LRK53_RS01635 at 386.740 kb on - strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.861 kb on + strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 386.862 kb on - strand, within LRK53_RS01635 at 387.201 kb on + strand at 387.201 kb on + strand at 387.201 kb on + strand at 387.201 kb on + strand at 387.202 kb on - strand at 387.202 kb on - strand at 387.255 kb on + strand at 387.255 kb on + strand at 387.330 kb on + strand, within LRK53_RS01640 at 387.330 kb on + strand, within LRK53_RS01640 at 387.330 kb on + strand, within LRK53_RS01640 at 387.331 kb on - strand, within LRK53_RS01640 at 387.382 kb on - strand, within LRK53_RS01640 at 387.382 kb on - strand, within LRK53_RS01640 at 387.382 kb on - strand, within LRK53_RS01640 at 387.489 kb on + strand, within LRK53_RS01640 at 387.489 kb on + strand, within LRK53_RS01640 at 387.489 kb on + strand, within LRK53_RS01640 at 387.489 kb on + strand, within LRK53_RS01640 at 387.490 kb on - strand, within LRK53_RS01640 at 387.490 kb on - strand, within LRK53_RS01640 at 387.490 kb on - strand, within LRK53_RS01640 at 387.594 kb on + strand at 387.594 kb on + strand at 387.594 kb on + strand at 387.595 kb on - strand at 387.595 kb on - strand at 387.595 kb on - strand at 387.595 kb on - strand at 387.637 kb on - strand at 387.637 kb on - strand at 387.714 kb on + strand at 387.714 kb on + strand at 387.714 kb on + strand at 387.714 kb on + strand at 387.714 kb on + strand at 387.714 kb on + strand at 387.715 kb on - strand at 387.715 kb on - strand at 387.715 kb on - strand at 387.715 kb on - strand at 387.715 kb on - strand at 387.715 kb on - strand at 388.154 kb on + strand at 388.154 kb on + strand at 388.154 kb on + strand at 388.154 kb on + strand at 388.154 kb on + strand at 388.154 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction planktonic; Day1; NLDM; Aluminum chloride 1mM remove 386,283 + +0.3 386,284 - +0.8 386,284 - -0.2 386,284 - +0.5 386,284 - -0.9 386,314 + -1.4 386,322 + -1.4 386,322 + +0.9 386,322 + -1.1 386,322 + -0.5 386,322 + -0.7 386,322 + +1.2 386,322 + -0.9 386,322 + -1.1 386,322 + +0.7 386,322 + -1.1 386,322 + +0.0 386,322 + +1.7 386,323 - -1.6 386,323 - -0.7 386,323 - -1.1 386,323 - +1.5 386,323 - +0.1 386,323 - +1.8 386,488 - LRK53_RS01635 0.19 -1.8 386,547 + LRK53_RS01635 0.25 -0.3 386,547 + LRK53_RS01635 0.25 -1.5 386,547 + LRK53_RS01635 0.25 +0.1 386,547 + LRK53_RS01635 0.25 +0.9 386,547 + LRK53_RS01635 0.25 -0.1 386,548 - LRK53_RS01635 0.25 -0.2 386,548 - LRK53_RS01635 0.25 -0.9 386,548 - LRK53_RS01635 0.25 -1.3 386,548 - LRK53_RS01635 0.25 -1.4 386,548 - LRK53_RS01635 0.25 +0.3 386,548 - LRK53_RS01635 0.25 +0.1 386,548 - LRK53_RS01635 0.25 -1.8 386,548 - LRK53_RS01635 0.25 -0.4 386,548 - LRK53_RS01635 0.25 -2.4 386,721 + LRK53_RS01635 0.45 -0.2 386,721 + LRK53_RS01635 0.45 -1.9 386,721 + LRK53_RS01635 0.45 -1.0 386,721 + LRK53_RS01635 0.45 -1.0 386,721 + LRK53_RS01635 0.45 -0.3 386,721 + LRK53_RS01635 0.45 -0.2 386,721 + LRK53_RS01635 0.45 +1.1 386,721 + LRK53_RS01635 0.45 -0.2 386,721 + LRK53_RS01635 0.45 -1.3 386,721 + LRK53_RS01635 0.45 -0.8 386,721 + LRK53_RS01635 0.45 +1.0 386,721 + LRK53_RS01635 0.45 -0.3 386,721 + LRK53_RS01635 0.45 +1.1 386,721 + LRK53_RS01635 0.45 +0.0 386,721 + LRK53_RS01635 0.45 -0.4 386,721 + LRK53_RS01635 0.45 -0.8 386,721 + LRK53_RS01635 0.45 -1.3 386,721 + LRK53_RS01635 0.45 +2.1 386,721 + LRK53_RS01635 0.45 -0.3 386,721 + LRK53_RS01635 0.45 -0.4 386,722 - LRK53_RS01635 0.45 +0.5 386,722 - LRK53_RS01635 0.45 -0.2 386,722 - LRK53_RS01635 0.45 -0.5 386,722 - LRK53_RS01635 0.45 -1.5 386,722 - LRK53_RS01635 0.45 -1.7 386,722 - LRK53_RS01635 0.45 +0.6 386,722 - LRK53_RS01635 0.45 -0.7 386,722 - LRK53_RS01635 0.45 -0.1 386,722 - LRK53_RS01635 0.45 +2.0 386,722 - LRK53_RS01635 0.45 -0.9 386,722 - LRK53_RS01635 0.45 -1.9 386,722 - LRK53_RS01635 0.45 +0.8 386,722 - LRK53_RS01635 0.45 -0.7 386,722 - LRK53_RS01635 0.45 -0.5 386,722 - LRK53_RS01635 0.45 -0.1 386,722 - LRK53_RS01635 0.45 -0.2 386,722 - LRK53_RS01635 0.45 -0.2 386,722 - LRK53_RS01635 0.45 -2.6 386,722 - LRK53_RS01635 0.45 -0.3 386,739 + LRK53_RS01635 0.47 +0.7 386,739 + LRK53_RS01635 0.47 -0.9 386,740 - LRK53_RS01635 0.47 -2.4 386,740 - LRK53_RS01635 0.47 -0.7 386,740 - LRK53_RS01635 0.47 -0.1 386,740 - LRK53_RS01635 0.47 -2.4 386,740 - LRK53_RS01635 0.47 +0.7 386,740 - LRK53_RS01635 0.47 -0.2 386,861 + LRK53_RS01635 0.60 -0.7 386,861 + LRK53_RS01635 0.60 -0.2 386,861 + LRK53_RS01635 0.60 -0.8 386,861 + LRK53_RS01635 0.60 +0.3 386,861 + LRK53_RS01635 0.60 -0.2 386,861 + LRK53_RS01635 0.60 -1.3 386,861 + LRK53_RS01635 0.60 -0.3 386,861 + LRK53_RS01635 0.60 -1.0 386,861 + LRK53_RS01635 0.60 -0.1 386,861 + LRK53_RS01635 0.60 -1.3 386,861 + LRK53_RS01635 0.60 -1.0 386,861 + LRK53_RS01635 0.60 +1.5 386,861 + LRK53_RS01635 0.60 -0.7 386,861 + LRK53_RS01635 0.60 -0.4 386,861 + LRK53_RS01635 0.60 -0.3 386,861 + LRK53_RS01635 0.60 +0.1 386,861 + LRK53_RS01635 0.60 -0.7 386,861 + LRK53_RS01635 0.60 -1.0 386,861 + LRK53_RS01635 0.60 +1.8 386,861 + LRK53_RS01635 0.60 -0.9 386,861 + LRK53_RS01635 0.60 -1.3 386,861 + LRK53_RS01635 0.60 +0.1 386,861 + LRK53_RS01635 0.60 -0.6 386,861 + LRK53_RS01635 0.60 -1.4 386,861 + LRK53_RS01635 0.60 -1.8 386,861 + LRK53_RS01635 0.60 +2.9 386,861 + LRK53_RS01635 0.60 -0.7 386,861 + LRK53_RS01635 0.60 -1.1 386,861 + LRK53_RS01635 0.60 -0.1 386,861 + LRK53_RS01635 0.60 -0.1 386,861 + LRK53_RS01635 0.60 -1.4 386,861 + LRK53_RS01635 0.60 -2.0 386,861 + LRK53_RS01635 0.60 +1.0 386,861 + LRK53_RS01635 0.60 -1.0 386,861 + LRK53_RS01635 0.60 -0.8 386,862 - LRK53_RS01635 0.60 -1.2 386,862 - LRK53_RS01635 0.60 -2.5 386,862 - LRK53_RS01635 0.60 -0.8 386,862 - LRK53_RS01635 0.60 +0.2 386,862 - LRK53_RS01635 0.60 -2.7 386,862 - LRK53_RS01635 0.60 -0.8 386,862 - LRK53_RS01635 0.60 +0.1 386,862 - LRK53_RS01635 0.60 -1.6 386,862 - LRK53_RS01635 0.60 -0.6 386,862 - LRK53_RS01635 0.60 -0.4 386,862 - LRK53_RS01635 0.60 -0.2 386,862 - LRK53_RS01635 0.60 -1.2 386,862 - LRK53_RS01635 0.60 -0.3 386,862 - LRK53_RS01635 0.60 -1.4 386,862 - LRK53_RS01635 0.60 -1.4 386,862 - LRK53_RS01635 0.60 -0.2 386,862 - LRK53_RS01635 0.60 -0.8 386,862 - LRK53_RS01635 0.60 +0.6 386,862 - LRK53_RS01635 0.60 -0.3 386,862 - LRK53_RS01635 0.60 -2.1 386,862 - LRK53_RS01635 0.60 -0.7 386,862 - LRK53_RS01635 0.60 -0.7 386,862 - LRK53_RS01635 0.60 -1.8 386,862 - LRK53_RS01635 0.60 -0.2 386,862 - LRK53_RS01635 0.60 -0.1 386,862 - LRK53_RS01635 0.60 +1.1 386,862 - LRK53_RS01635 0.60 -0.1 386,862 - LRK53_RS01635 0.60 -0.8 386,862 - LRK53_RS01635 0.60 -1.2 386,862 - LRK53_RS01635 0.60 -1.8 386,862 - LRK53_RS01635 0.60 -2.0 386,862 - LRK53_RS01635 0.60 -0.2 386,862 - LRK53_RS01635 0.60 +0.9 386,862 - LRK53_RS01635 0.60 +0.6 386,862 - LRK53_RS01635 0.60 -0.7 386,862 - LRK53_RS01635 0.60 -0.9 387,201 + -0.6 387,201 + -0.5 387,201 + -0.4 387,201 + -0.7 387,202 - +0.1 387,202 - -1.4 387,255 + -1.3 387,255 + +0.1 387,330 + LRK53_RS01640 0.14 -0.7 387,330 + LRK53_RS01640 0.14 -1.4 387,330 + LRK53_RS01640 0.14 +0.1 387,331 - LRK53_RS01640 0.14 -3.2 387,382 - LRK53_RS01640 0.29 +1.7 387,382 - LRK53_RS01640 0.29 -0.1 387,382 - LRK53_RS01640 0.29 -0.5 387,489 + LRK53_RS01640 0.60 -0.4 387,489 + LRK53_RS01640 0.60 -1.0 387,489 + LRK53_RS01640 0.60 -1.9 387,489 + LRK53_RS01640 0.60 +0.9 387,490 - LRK53_RS01640 0.61 -0.5 387,490 - LRK53_RS01640 0.61 -2.3 387,490 - LRK53_RS01640 0.61 +0.5 387,594 + +0.1 387,594 + -0.1 387,594 + +0.6 387,595 - -1.4 387,595 - +0.8 387,595 - -0.4 387,595 - -1.3 387,637 - +0.6 387,637 - -0.9 387,714 + -1.2 387,714 + -2.1 387,714 + -0.5 387,714 + -0.9 387,714 + +0.4 387,714 + +0.3 387,715 - -1.1 387,715 - +0.3 387,715 - -1.4 387,715 - +0.6 387,715 - -1.7 387,715 - -0.5 388,154 + -0.8 388,154 + -0.8 388,154 + -0.5 388,154 + -0.1 388,154 + +0.2 388,154 + +2.7
Or see this region's nucleotide sequence