Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS41275 and QEN71_RS41280 are separated by 75 nucleotides QEN71_RS41280 and QEN71_RS41285 are separated by 146 nucleotides
QEN71_RS41275: QEN71_RS41275 - D-serine ammonia-lyase, at 328,863 to 330,218
_RS41275
QEN71_RS41280: QEN71_RS41280 - DNA-binding transcriptional regulator DsdC, at 330,294 to 331,235
_RS41280
QEN71_RS41285: QEN71_RS41285 - aldehyde dehydrogenase, at 331,382 to 332,881
_RS41285
Position (kb) 330
331
332 Strain fitness (log2 ratio) -2
-1
0
1
2 at 329.347 kb on - strand, within QEN71_RS41275 at 329.432 kb on + strand, within QEN71_RS41275 at 329.432 kb on + strand, within QEN71_RS41275 at 329.433 kb on - strand, within QEN71_RS41275 at 329.433 kb on - strand, within QEN71_RS41275 at 329.433 kb on - strand, within QEN71_RS41275 at 329.502 kb on - strand, within QEN71_RS41275 at 329.502 kb on - strand, within QEN71_RS41275 at 329.692 kb on + strand, within QEN71_RS41275 at 329.692 kb on + strand, within QEN71_RS41275 at 329.692 kb on + strand, within QEN71_RS41275 at 329.761 kb on + strand, within QEN71_RS41275 at 329.762 kb on - strand, within QEN71_RS41275 at 329.798 kb on + strand, within QEN71_RS41275 at 329.798 kb on + strand, within QEN71_RS41275 at 329.799 kb on - strand, within QEN71_RS41275 at 329.799 kb on - strand, within QEN71_RS41275 at 329.814 kb on + strand, within QEN71_RS41275 at 329.815 kb on - strand, within QEN71_RS41275 at 329.947 kb on - strand, within QEN71_RS41275 at 330.092 kb on - strand at 330.131 kb on + strand at 330.180 kb on + strand at 330.181 kb on - strand at 330.181 kb on - strand at 330.185 kb on - strand at 330.205 kb on + strand at 330.256 kb on + strand at 330.259 kb on + strand at 330.259 kb on + strand at 330.297 kb on + strand at 330.297 kb on + strand at 330.297 kb on + strand at 330.297 kb on + strand at 330.383 kb on + strand at 330.384 kb on - strand at 330.441 kb on - strand, within QEN71_RS41280 at 330.608 kb on + strand, within QEN71_RS41280 at 330.616 kb on - strand, within QEN71_RS41280 at 330.792 kb on + strand, within QEN71_RS41280 at 330.793 kb on - strand, within QEN71_RS41280 at 330.793 kb on - strand, within QEN71_RS41280 at 330.814 kb on + strand, within QEN71_RS41280 at 330.837 kb on + strand, within QEN71_RS41280 at 330.837 kb on + strand, within QEN71_RS41280 at 331.019 kb on + strand, within QEN71_RS41280 at 331.019 kb on + strand, within QEN71_RS41280 at 331.022 kb on + strand, within QEN71_RS41280 at 331.139 kb on + strand, within QEN71_RS41280 at 331.139 kb on + strand, within QEN71_RS41280 at 331.139 kb on + strand, within QEN71_RS41280 at 331.139 kb on + strand, within QEN71_RS41280 at 331.139 kb on + strand, within QEN71_RS41280 at 331.140 kb on - strand, within QEN71_RS41280 at 331.140 kb on - strand, within QEN71_RS41280 at 331.143 kb on + strand at 331.143 kb on + strand at 331.146 kb on + strand at 331.147 kb on - strand at 331.205 kb on - strand at 331.335 kb on + strand at 331.335 kb on + strand at 331.335 kb on + strand at 331.335 kb on + strand at 331.344 kb on + strand at 331.402 kb on + strand at 331.419 kb on + strand at 331.473 kb on + strand at 331.555 kb on + strand, within QEN71_RS41285 at 331.555 kb on + strand, within QEN71_RS41285 at 331.556 kb on - strand, within QEN71_RS41285 at 331.556 kb on - strand, within QEN71_RS41285 at 331.556 kb on - strand, within QEN71_RS41285 at 331.602 kb on + strand, within QEN71_RS41285 at 331.602 kb on + strand, within QEN71_RS41285 at 331.603 kb on - strand, within QEN71_RS41285 at 331.815 kb on + strand, within QEN71_RS41285 at 331.816 kb on - strand, within QEN71_RS41285 at 331.816 kb on - strand, within QEN71_RS41285 at 331.939 kb on + strand, within QEN71_RS41285 at 332.179 kb on + strand, within QEN71_RS41285 at 332.179 kb on + strand, within QEN71_RS41285 at 332.180 kb on - strand, within QEN71_RS41285 at 332.180 kb on - strand, within QEN71_RS41285
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 329,347 - QEN71_RS41275 0.36 -0.3 329,432 + QEN71_RS41275 0.42 -0.5 329,432 + QEN71_RS41275 0.42 -0.4 329,433 - QEN71_RS41275 0.42 -2.3 329,433 - QEN71_RS41275 0.42 -0.7 329,433 - QEN71_RS41275 0.42 -0.4 329,502 - QEN71_RS41275 0.47 +1.0 329,502 - QEN71_RS41275 0.47 -0.4 329,692 + QEN71_RS41275 0.61 +0.4 329,692 + QEN71_RS41275 0.61 -0.1 329,692 + QEN71_RS41275 0.61 -0.8 329,761 + QEN71_RS41275 0.66 -0.3 329,762 - QEN71_RS41275 0.66 -0.1 329,798 + QEN71_RS41275 0.69 +0.4 329,798 + QEN71_RS41275 0.69 +0.2 329,799 - QEN71_RS41275 0.69 +0.3 329,799 - QEN71_RS41275 0.69 -0.2 329,814 + QEN71_RS41275 0.70 -0.5 329,815 - QEN71_RS41275 0.70 +0.5 329,947 - QEN71_RS41275 0.80 +0.6 330,092 - -0.4 330,131 + -1.4 330,180 + -0.0 330,181 - -0.3 330,181 - -0.3 330,185 - -0.5 330,205 + -1.5 330,256 + +0.2 330,259 + +0.9 330,259 + -0.5 330,297 + -0.2 330,297 + -0.4 330,297 + -1.8 330,297 + -0.4 330,383 + -0.1 330,384 - +0.1 330,441 - QEN71_RS41280 0.16 -0.2 330,608 + QEN71_RS41280 0.33 -0.7 330,616 - QEN71_RS41280 0.34 +0.2 330,792 + QEN71_RS41280 0.53 +0.2 330,793 - QEN71_RS41280 0.53 +0.2 330,793 - QEN71_RS41280 0.53 +1.2 330,814 + QEN71_RS41280 0.55 -2.1 330,837 + QEN71_RS41280 0.58 -0.7 330,837 + QEN71_RS41280 0.58 +1.2 331,019 + QEN71_RS41280 0.77 -0.1 331,019 + QEN71_RS41280 0.77 +0.9 331,022 + QEN71_RS41280 0.77 +0.3 331,139 + QEN71_RS41280 0.90 -0.8 331,139 + QEN71_RS41280 0.90 +0.6 331,139 + QEN71_RS41280 0.90 -1.4 331,139 + QEN71_RS41280 0.90 +0.5 331,139 + QEN71_RS41280 0.90 +2.2 331,140 - QEN71_RS41280 0.90 -0.7 331,140 - QEN71_RS41280 0.90 +1.6 331,143 + +1.4 331,143 + -0.7 331,146 + -0.1 331,147 - +0.6 331,205 - +0.2 331,335 + -0.6 331,335 + -0.2 331,335 + -1.1 331,335 + -1.7 331,344 + +0.1 331,402 + +0.2 331,419 + -0.6 331,473 + -1.4 331,555 + QEN71_RS41285 0.12 -1.3 331,555 + QEN71_RS41285 0.12 +0.6 331,556 - QEN71_RS41285 0.12 -0.6 331,556 - QEN71_RS41285 0.12 -0.1 331,556 - QEN71_RS41285 0.12 -0.4 331,602 + QEN71_RS41285 0.15 -1.0 331,602 + QEN71_RS41285 0.15 +1.6 331,603 - QEN71_RS41285 0.15 -0.9 331,815 + QEN71_RS41285 0.29 -0.2 331,816 - QEN71_RS41285 0.29 +0.7 331,816 - QEN71_RS41285 0.29 -0.2 331,939 + QEN71_RS41285 0.37 +1.2 332,179 + QEN71_RS41285 0.53 +0.5 332,179 + QEN71_RS41285 0.53 -0.9 332,180 - QEN71_RS41285 0.53 -0.7 332,180 - QEN71_RS41285 0.53 -0.9
Or see this region's nucleotide sequence