Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS36070

Experiment: L-Rhamnose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS36065 and QEN71_RS36070 are separated by 94 nucleotidesQEN71_RS36070 and QEN71_RS36075 are separated by 2 nucleotides QEN71_RS36065: QEN71_RS36065 - sugar ABC transporter substrate-binding protein, at 1,475,674 to 1,476,783 _RS36065 QEN71_RS36070: QEN71_RS36070 - class II aldolase/adducin family protein, at 1,476,878 to 1,477,552 _RS36070 QEN71_RS36075: QEN71_RS36075 - S-methyl-5-thioribose-1-phosphate isomerase, at 1,477,555 to 1,478,643 _RS36075 Position (kb) 1476 1477 1478Strain fitness (log2 ratio) -1 0 1at 1476.156 kb on + strand, within QEN71_RS36065at 1476.340 kb on - strand, within QEN71_RS36065at 1476.803 kb on - strandat 1476.846 kb on + strandat 1476.985 kb on - strand, within QEN71_RS36070at 1477.189 kb on - strand, within QEN71_RS36070at 1477.189 kb on - strand, within QEN71_RS36070at 1477.189 kb on - strand, within QEN71_RS36070at 1477.189 kb on - strand, within QEN71_RS36070at 1477.189 kb on - strand, within QEN71_RS36070at 1477.205 kb on - strand, within QEN71_RS36070at 1478.064 kb on - strand, within QEN71_RS36075at 1478.099 kb on + strand, within QEN71_RS36075at 1478.100 kb on - strand, within QEN71_RS36075at 1478.218 kb on + strand, within QEN71_RS36075at 1478.219 kb on - strand, within QEN71_RS36075

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
remove
1,476,156 + QEN71_RS36065 0.43 -0.1
1,476,340 - QEN71_RS36065 0.60 -1.2
1,476,803 - +0.9
1,476,846 + +0.9
1,476,985 - QEN71_RS36070 0.16 +0.8
1,477,189 - QEN71_RS36070 0.46 +0.9
1,477,189 - QEN71_RS36070 0.46 -0.0
1,477,189 - QEN71_RS36070 0.46 -0.1
1,477,189 - QEN71_RS36070 0.46 -1.2
1,477,189 - QEN71_RS36070 0.46 +0.8
1,477,205 - QEN71_RS36070 0.48 +0.0
1,478,064 - QEN71_RS36075 0.47 +0.0
1,478,099 + QEN71_RS36075 0.50 -0.7
1,478,100 - QEN71_RS36075 0.50 -0.2
1,478,218 + QEN71_RS36075 0.61 +1.1
1,478,219 - QEN71_RS36075 0.61 -0.9

Or see this region's nucleotide sequence