Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS35715

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS35710 and QEN71_RS35715 are separated by 105 nucleotidesQEN71_RS35715 and QEN71_RS35720 are separated by 160 nucleotides QEN71_RS35710: QEN71_RS35710 - FAD-dependent oxidoreductase, at 1,393,287 to 1,394,654 _RS35710 QEN71_RS35715: QEN71_RS35715 - dihydroxy-acid dehydratase, at 1,394,760 to 1,396,439 _RS35715 QEN71_RS35720: QEN71_RS35720 - LacI family DNA-binding transcriptional regulator, at 1,396,600 to 1,397,682 _RS35720 Position (kb) 1394 1395 1396 1397Strain fitness (log2 ratio) -3 -2 -1 0 1at 1393.848 kb on + strand, within QEN71_RS35710at 1393.849 kb on - strand, within QEN71_RS35710at 1393.951 kb on + strand, within QEN71_RS35710at 1393.952 kb on - strand, within QEN71_RS35710at 1393.952 kb on - strand, within QEN71_RS35710at 1394.005 kb on - strand, within QEN71_RS35710at 1394.005 kb on - strand, within QEN71_RS35710at 1394.167 kb on - strand, within QEN71_RS35710at 1394.168 kb on + strand, within QEN71_RS35710at 1394.169 kb on - strand, within QEN71_RS35710at 1394.196 kb on - strand, within QEN71_RS35710at 1394.202 kb on - strand, within QEN71_RS35710at 1394.239 kb on - strand, within QEN71_RS35710at 1394.370 kb on + strand, within QEN71_RS35710at 1394.370 kb on + strand, within QEN71_RS35710at 1394.371 kb on - strand, within QEN71_RS35710at 1394.416 kb on + strand, within QEN71_RS35710at 1394.416 kb on + strand, within QEN71_RS35710at 1394.417 kb on - strand, within QEN71_RS35710at 1394.550 kb on - strandat 1394.551 kb on + strandat 1394.552 kb on - strandat 1394.552 kb on - strandat 1394.552 kb on - strandat 1394.652 kb on + strandat 1394.885 kb on + strandat 1394.888 kb on + strandat 1394.888 kb on + strandat 1394.888 kb on + strandat 1394.889 kb on - strandat 1394.889 kb on - strandat 1394.889 kb on - strandat 1394.889 kb on - strandat 1395.039 kb on + strand, within QEN71_RS35715at 1395.039 kb on + strand, within QEN71_RS35715at 1395.039 kb on + strand, within QEN71_RS35715at 1395.039 kb on + strand, within QEN71_RS35715at 1395.040 kb on - strand, within QEN71_RS35715at 1395.040 kb on - strand, within QEN71_RS35715at 1395.040 kb on - strand, within QEN71_RS35715at 1395.041 kb on + strand, within QEN71_RS35715at 1395.042 kb on - strand, within QEN71_RS35715at 1395.222 kb on + strand, within QEN71_RS35715at 1395.223 kb on - strand, within QEN71_RS35715at 1395.223 kb on - strand, within QEN71_RS35715at 1395.432 kb on - strand, within QEN71_RS35715at 1395.453 kb on + strand, within QEN71_RS35715at 1395.637 kb on + strand, within QEN71_RS35715at 1395.637 kb on + strand, within QEN71_RS35715at 1395.637 kb on + strand, within QEN71_RS35715at 1395.637 kb on + strand, within QEN71_RS35715at 1395.670 kb on + strand, within QEN71_RS35715at 1395.748 kb on + strand, within QEN71_RS35715at 1395.828 kb on + strand, within QEN71_RS35715at 1395.828 kb on + strand, within QEN71_RS35715at 1395.828 kb on + strand, within QEN71_RS35715at 1395.830 kb on + strand, within QEN71_RS35715at 1395.830 kb on + strand, within QEN71_RS35715at 1395.830 kb on + strand, within QEN71_RS35715at 1395.830 kb on + strand, within QEN71_RS35715at 1395.831 kb on - strand, within QEN71_RS35715at 1395.831 kb on - strand, within QEN71_RS35715at 1395.831 kb on - strand, within QEN71_RS35715at 1395.831 kb on - strand, within QEN71_RS35715at 1395.831 kb on - strand, within QEN71_RS35715at 1395.831 kb on - strand, within QEN71_RS35715at 1395.988 kb on + strand, within QEN71_RS35715at 1395.989 kb on - strand, within QEN71_RS35715at 1396.099 kb on - strand, within QEN71_RS35715at 1396.386 kb on + strandat 1396.386 kb on + strandat 1396.408 kb on + strandat 1396.408 kb on + strandat 1396.408 kb on + strandat 1396.408 kb on + strandat 1396.409 kb on - strandat 1396.409 kb on - strandat 1396.409 kb on - strandat 1396.409 kb on - strandat 1396.409 kb on - strandat 1396.410 kb on + strandat 1396.410 kb on + strandat 1396.410 kb on + strandat 1396.410 kb on + strandat 1396.410 kb on + strandat 1396.410 kb on + strandat 1396.410 kb on + strandat 1396.410 kb on + strandat 1396.411 kb on - strandat 1396.411 kb on - strandat 1396.411 kb on - strandat 1396.411 kb on - strandat 1396.411 kb on - strandat 1396.411 kb on - strandat 1396.411 kb on - strandat 1396.412 kb on + strandat 1396.412 kb on + strandat 1396.413 kb on - strandat 1396.413 kb on - strandat 1396.413 kb on - strandat 1396.413 kb on - strandat 1396.413 kb on - strandat 1396.483 kb on - strandat 1396.581 kb on + strandat 1396.605 kb on + strandat 1396.605 kb on + strandat 1396.606 kb on - strandat 1396.606 kb on - strandat 1396.606 kb on - strandat 1396.606 kb on - strandat 1396.606 kb on - strandat 1396.685 kb on + strandat 1396.686 kb on - strandat 1396.785 kb on + strand, within QEN71_RS35720at 1396.786 kb on - strand, within QEN71_RS35720at 1396.786 kb on - strand, within QEN71_RS35720at 1396.786 kb on - strand, within QEN71_RS35720at 1396.788 kb on + strand, within QEN71_RS35720at 1396.802 kb on + strand, within QEN71_RS35720at 1397.027 kb on + strand, within QEN71_RS35720at 1397.122 kb on + strand, within QEN71_RS35720at 1397.186 kb on + strand, within QEN71_RS35720at 1397.186 kb on + strand, within QEN71_RS35720at 1397.186 kb on + strand, within QEN71_RS35720at 1397.186 kb on + strand, within QEN71_RS35720at 1397.186 kb on + strand, within QEN71_RS35720at 1397.187 kb on - strand, within QEN71_RS35720at 1397.187 kb on - strand, within QEN71_RS35720

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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1,393,848 + QEN71_RS35710 0.41 -0.3
1,393,849 - QEN71_RS35710 0.41 -0.6
1,393,951 + QEN71_RS35710 0.49 +1.4
1,393,952 - QEN71_RS35710 0.49 -0.3
1,393,952 - QEN71_RS35710 0.49 -0.9
1,394,005 - QEN71_RS35710 0.52 +0.8
1,394,005 - QEN71_RS35710 0.52 -0.7
1,394,167 - QEN71_RS35710 0.64 -0.7
1,394,168 + QEN71_RS35710 0.64 -1.2
1,394,169 - QEN71_RS35710 0.64 -0.0
1,394,196 - QEN71_RS35710 0.66 +1.4
1,394,202 - QEN71_RS35710 0.67 +1.3
1,394,239 - QEN71_RS35710 0.70 -0.3
1,394,370 + QEN71_RS35710 0.79 -0.2
1,394,370 + QEN71_RS35710 0.79 +0.1
1,394,371 - QEN71_RS35710 0.79 +0.1
1,394,416 + QEN71_RS35710 0.83 +0.1
1,394,416 + QEN71_RS35710 0.83 -0.2
1,394,417 - QEN71_RS35710 0.83 -0.4
1,394,550 - -0.8
1,394,551 + +0.2
1,394,552 - -1.2
1,394,552 - +1.3
1,394,552 - -0.9
1,394,652 + -0.1
1,394,885 + +0.0
1,394,888 + -0.4
1,394,888 + +0.7
1,394,888 + +0.5
1,394,889 - -0.2
1,394,889 - -0.2
1,394,889 - +0.2
1,394,889 - -0.1
1,395,039 + QEN71_RS35715 0.17 -1.5
1,395,039 + QEN71_RS35715 0.17 +0.6
1,395,039 + QEN71_RS35715 0.17 +0.1
1,395,039 + QEN71_RS35715 0.17 +0.6
1,395,040 - QEN71_RS35715 0.17 +0.3
1,395,040 - QEN71_RS35715 0.17 +0.5
1,395,040 - QEN71_RS35715 0.17 +0.7
1,395,041 + QEN71_RS35715 0.17 -1.6
1,395,042 - QEN71_RS35715 0.17 -1.4
1,395,222 + QEN71_RS35715 0.28 -2.5
1,395,223 - QEN71_RS35715 0.28 -1.1
1,395,223 - QEN71_RS35715 0.28 +0.0
1,395,432 - QEN71_RS35715 0.40 -0.2
1,395,453 + QEN71_RS35715 0.41 +0.0
1,395,637 + QEN71_RS35715 0.52 +0.2
1,395,637 + QEN71_RS35715 0.52 +0.6
1,395,637 + QEN71_RS35715 0.52 +0.3
1,395,637 + QEN71_RS35715 0.52 -1.1
1,395,670 + QEN71_RS35715 0.54 +0.7
1,395,748 + QEN71_RS35715 0.59 -1.6
1,395,828 + QEN71_RS35715 0.64 +0.2
1,395,828 + QEN71_RS35715 0.64 -0.3
1,395,828 + QEN71_RS35715 0.64 -0.4
1,395,830 + QEN71_RS35715 0.64 +0.5
1,395,830 + QEN71_RS35715 0.64 +0.9
1,395,830 + QEN71_RS35715 0.64 +0.1
1,395,830 + QEN71_RS35715 0.64 -0.2
1,395,831 - QEN71_RS35715 0.64 -0.0
1,395,831 - QEN71_RS35715 0.64 +1.1
1,395,831 - QEN71_RS35715 0.64 -0.1
1,395,831 - QEN71_RS35715 0.64 +1.2
1,395,831 - QEN71_RS35715 0.64 -0.4
1,395,831 - QEN71_RS35715 0.64 +0.8
1,395,988 + QEN71_RS35715 0.73 +0.2
1,395,989 - QEN71_RS35715 0.73 +0.3
1,396,099 - QEN71_RS35715 0.80 +1.6
1,396,386 + -1.1
1,396,386 + -1.3
1,396,408 + -0.1
1,396,408 + +0.7
1,396,408 + +0.2
1,396,408 + -0.4
1,396,409 - +0.6
1,396,409 - +0.3
1,396,409 - -0.7
1,396,409 - -0.9
1,396,409 - -0.6
1,396,410 + +0.3
1,396,410 + +0.3
1,396,410 + -1.4
1,396,410 + +0.3
1,396,410 + -0.8
1,396,410 + -0.1
1,396,410 + -0.3
1,396,410 + -1.0
1,396,411 - -1.4
1,396,411 - +0.6
1,396,411 - -0.1
1,396,411 - -1.0
1,396,411 - -0.5
1,396,411 - +0.2
1,396,411 - -0.3
1,396,412 + -1.0
1,396,412 + -0.0
1,396,413 - -0.4
1,396,413 - -0.2
1,396,413 - -0.4
1,396,413 - -1.7
1,396,413 - -1.1
1,396,483 - -0.7
1,396,581 + -0.4
1,396,605 + -1.2
1,396,605 + -1.4
1,396,606 - -1.7
1,396,606 - -0.2
1,396,606 - +1.4
1,396,606 - -0.8
1,396,606 - +0.4
1,396,685 + -2.8
1,396,686 - -0.2
1,396,785 + QEN71_RS35720 0.17 -0.0
1,396,786 - QEN71_RS35720 0.17 -1.0
1,396,786 - QEN71_RS35720 0.17 -0.2
1,396,786 - QEN71_RS35720 0.17 -1.9
1,396,788 + QEN71_RS35720 0.17 -0.4
1,396,802 + QEN71_RS35720 0.19 -0.8
1,397,027 + QEN71_RS35720 0.39 -1.4
1,397,122 + QEN71_RS35720 0.48 -1.8
1,397,186 + QEN71_RS35720 0.54 -0.2
1,397,186 + QEN71_RS35720 0.54 -0.6
1,397,186 + QEN71_RS35720 0.54 -2.4
1,397,186 + QEN71_RS35720 0.54 -1.2
1,397,186 + QEN71_RS35720 0.54 -0.4
1,397,187 - QEN71_RS35720 0.54 -2.0
1,397,187 - QEN71_RS35720 0.54 +0.2

Or see this region's nucleotide sequence