Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS34160 and QEN71_RS34165 are separated by 188 nucleotides QEN71_RS34165 and QEN71_RS34170 are separated by 501 nucleotides
QEN71_RS34160: QEN71_RS34160 - FAD-dependent oxidoreductase, at 980,822 to 983,014
_RS34160
QEN71_RS34165: QEN71_RS34165 - aminomethyltransferase family protein, at 983,203 to 984,315
_RS34165
QEN71_RS34170: QEN71_RS34170 - PDR/VanB family oxidoreductase, at 984,817 to 985,773
_RS34170
Position (kb) 983
984
985 Strain fitness (log2 ratio) -1
0
1
2 at 982.461 kb on + strand, within QEN71_RS34160 at 982.491 kb on + strand, within QEN71_RS34160 at 982.492 kb on - strand, within QEN71_RS34160 at 982.492 kb on - strand, within QEN71_RS34160 at 982.507 kb on - strand, within QEN71_RS34160 at 982.507 kb on - strand, within QEN71_RS34160 at 982.512 kb on + strand, within QEN71_RS34160 at 982.513 kb on - strand, within QEN71_RS34160 at 982.513 kb on - strand, within QEN71_RS34160 at 982.560 kb on + strand, within QEN71_RS34160 at 982.560 kb on + strand, within QEN71_RS34160 at 982.561 kb on - strand, within QEN71_RS34160 at 982.561 kb on - strand, within QEN71_RS34160 at 982.673 kb on - strand, within QEN71_RS34160 at 982.834 kb on - strand at 982.938 kb on + strand at 983.041 kb on - strand at 983.412 kb on - strand, within QEN71_RS34165 at 983.412 kb on - strand, within QEN71_RS34165 at 983.600 kb on + strand, within QEN71_RS34165 at 984.003 kb on - strand, within QEN71_RS34165 at 984.168 kb on - strand, within QEN71_RS34165 at 984.207 kb on - strand at 984.222 kb on - strand at 984.222 kb on - strand at 984.332 kb on + strand at 984.385 kb on - strand at 984.548 kb on + strand at 984.549 kb on - strand at 984.675 kb on + strand at 984.675 kb on + strand at 984.676 kb on - strand at 984.709 kb on + strand at 984.733 kb on + strand at 984.888 kb on + strand at 984.926 kb on - strand, within QEN71_RS34170 at 985.025 kb on - strand, within QEN71_RS34170 at 985.303 kb on - strand, within QEN71_RS34170
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 982,461 + QEN71_RS34160 0.75 +0.1 982,491 + QEN71_RS34160 0.76 -1.7 982,492 - QEN71_RS34160 0.76 -0.9 982,492 - QEN71_RS34160 0.76 +0.2 982,507 - QEN71_RS34160 0.77 +0.1 982,507 - QEN71_RS34160 0.77 -0.8 982,512 + QEN71_RS34160 0.77 -0.1 982,513 - QEN71_RS34160 0.77 +0.6 982,513 - QEN71_RS34160 0.77 -0.6 982,560 + QEN71_RS34160 0.79 -0.1 982,560 + QEN71_RS34160 0.79 -0.1 982,561 - QEN71_RS34160 0.79 +0.5 982,561 - QEN71_RS34160 0.79 -0.5 982,673 - QEN71_RS34160 0.84 +0.3 982,834 - +0.2 982,938 + -0.1 983,041 - -0.1 983,412 - QEN71_RS34165 0.19 -0.3 983,412 - QEN71_RS34165 0.19 -0.4 983,600 + QEN71_RS34165 0.36 -1.4 984,003 - QEN71_RS34165 0.72 -0.5 984,168 - QEN71_RS34165 0.87 -0.5 984,207 - +0.2 984,222 - -0.5 984,222 - -0.3 984,332 + -1.1 984,385 - -1.4 984,548 + +1.9 984,549 - -0.5 984,675 + -0.4 984,675 + -1.7 984,676 - -0.3 984,709 + +1.5 984,733 + +0.2 984,888 + +1.2 984,926 - QEN71_RS34170 0.11 +0.1 985,025 - QEN71_RS34170 0.22 -0.1 985,303 - QEN71_RS34170 0.51 +0.9
Or see this region's nucleotide sequence