Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS29685 and QEN71_RS29690 are separated by 104 nucleotides QEN71_RS29690 and QEN71_RS29695 are separated by 415 nucleotides QEN71_RS29695 and QEN71_RS29700 overlap by 49 nucleotides
QEN71_RS29685: QEN71_RS29685 - indolepyruvate ferredoxin oxidoreductase family protein, at 1 to 3,594
_RS29685
QEN71_RS29690: QEN71_RS29690 - hypothetical protein, at 3,699 to 3,842
_RS29690
QEN71_RS29695: QEN71_RS29695 - TonB-dependent siderophore receptor, at 4,258 to 6,471
_RS29695
QEN71_RS29700: QEN71_RS29700 - PepSY-associated TM helix domain-containing protein, at 6,423 to 8,057
_RS29700
Position (kb) 4
5
6
7 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3.351 kb on + strand at 3.352 kb on - strand at 3.394 kb on + strand at 3.394 kb on + strand at 3.394 kb on + strand at 3.394 kb on + strand at 3.395 kb on - strand at 3.597 kb on + strand at 3.597 kb on + strand at 3.597 kb on + strand at 3.597 kb on + strand at 3.597 kb on + strand at 3.597 kb on + strand at 3.597 kb on + strand at 3.597 kb on + strand at 3.597 kb on + strand at 3.598 kb on - strand at 3.598 kb on - strand at 3.598 kb on - strand at 3.598 kb on - strand at 3.598 kb on - strand at 3.598 kb on - strand at 3.598 kb on - strand at 3.598 kb on - strand at 3.598 kb on - strand at 3.598 kb on - strand at 3.675 kb on + strand at 3.676 kb on - strand at 3.782 kb on + strand, within QEN71_RS29690 at 3.782 kb on + strand, within QEN71_RS29690 at 3.840 kb on + strand at 3.841 kb on - strand at 3.941 kb on - strand at 3.944 kb on + strand at 3.945 kb on - strand at 3.945 kb on - strand at 3.945 kb on - strand at 3.945 kb on - strand at 3.946 kb on + strand at 3.947 kb on - strand at 3.947 kb on - strand at 3.947 kb on - strand at 3.962 kb on + strand at 3.962 kb on + strand at 4.107 kb on + strand at 4.107 kb on + strand at 4.107 kb on + strand at 4.107 kb on + strand at 4.136 kb on - strand at 4.203 kb on + strand at 4.203 kb on + strand at 4.203 kb on + strand at 4.203 kb on + strand at 4.203 kb on + strand at 4.203 kb on + strand at 4.204 kb on - strand at 4.204 kb on - strand at 4.204 kb on - strand at 4.204 kb on - strand at 4.204 kb on - strand at 4.204 kb on - strand at 4.204 kb on - strand at 4.204 kb on - strand at 4.204 kb on - strand at 4.236 kb on + strand at 4.236 kb on + strand at 4.236 kb on + strand at 4.236 kb on + strand at 4.236 kb on + strand at 4.236 kb on + strand at 4.236 kb on + strand at 4.237 kb on - strand at 4.237 kb on - strand at 4.237 kb on - strand at 4.237 kb on - strand at 4.237 kb on - strand at 4.257 kb on + strand at 4.257 kb on + strand at 4.257 kb on + strand at 4.257 kb on + strand at 4.257 kb on + strand at 4.257 kb on + strand at 4.258 kb on - strand at 4.258 kb on - strand at 4.477 kb on + strand at 4.564 kb on + strand, within QEN71_RS29695 at 4.564 kb on + strand, within QEN71_RS29695 at 4.564 kb on + strand, within QEN71_RS29695 at 4.565 kb on - strand, within QEN71_RS29695 at 4.565 kb on - strand, within QEN71_RS29695 at 4.565 kb on - strand, within QEN71_RS29695 at 4.565 kb on - strand, within QEN71_RS29695 at 4.565 kb on - strand, within QEN71_RS29695 at 4.565 kb on - strand, within QEN71_RS29695 at 4.565 kb on - strand, within QEN71_RS29695 at 4.646 kb on - strand, within QEN71_RS29695 at 4.726 kb on + strand, within QEN71_RS29695 at 4.727 kb on - strand, within QEN71_RS29695 at 4.727 kb on - strand, within QEN71_RS29695 at 4.974 kb on + strand, within QEN71_RS29695 at 4.975 kb on - strand, within QEN71_RS29695 at 5.086 kb on + strand, within QEN71_RS29695 at 5.101 kb on + strand, within QEN71_RS29695 at 5.101 kb on + strand, within QEN71_RS29695 at 5.248 kb on + strand, within QEN71_RS29695 at 5.249 kb on - strand, within QEN71_RS29695 at 5.249 kb on - strand, within QEN71_RS29695 at 5.249 kb on - strand, within QEN71_RS29695 at 5.276 kb on - strand, within QEN71_RS29695 at 5.317 kb on + strand, within QEN71_RS29695 at 5.317 kb on + strand, within QEN71_RS29695 at 5.317 kb on + strand, within QEN71_RS29695 at 5.318 kb on - strand, within QEN71_RS29695 at 5.318 kb on - strand, within QEN71_RS29695 at 5.318 kb on - strand, within QEN71_RS29695 at 5.445 kb on + strand, within QEN71_RS29695 at 5.445 kb on + strand, within QEN71_RS29695 at 5.445 kb on + strand, within QEN71_RS29695 at 5.445 kb on + strand, within QEN71_RS29695 at 5.445 kb on + strand, within QEN71_RS29695 at 5.446 kb on - strand, within QEN71_RS29695 at 5.446 kb on - strand, within QEN71_RS29695 at 5.446 kb on - strand, within QEN71_RS29695 at 5.446 kb on - strand, within QEN71_RS29695 at 5.446 kb on - strand, within QEN71_RS29695 at 5.446 kb on - strand, within QEN71_RS29695 at 5.446 kb on - strand, within QEN71_RS29695 at 5.446 kb on - strand, within QEN71_RS29695 at 5.446 kb on - strand, within QEN71_RS29695 at 5.446 kb on - strand, within QEN71_RS29695 at 5.607 kb on + strand, within QEN71_RS29695 at 5.607 kb on + strand, within QEN71_RS29695 at 5.607 kb on + strand, within QEN71_RS29695 at 5.608 kb on - strand, within QEN71_RS29695 at 5.608 kb on - strand, within QEN71_RS29695 at 5.710 kb on + strand, within QEN71_RS29695 at 5.710 kb on + strand, within QEN71_RS29695 at 5.710 kb on + strand, within QEN71_RS29695 at 5.710 kb on + strand, within QEN71_RS29695 at 5.710 kb on + strand, within QEN71_RS29695 at 5.710 kb on + strand, within QEN71_RS29695 at 5.710 kb on + strand, within QEN71_RS29695 at 5.711 kb on - strand, within QEN71_RS29695 at 5.711 kb on - strand, within QEN71_RS29695 at 5.711 kb on - strand, within QEN71_RS29695 at 5.711 kb on - strand, within QEN71_RS29695 at 5.906 kb on - strand, within QEN71_RS29695 at 5.906 kb on - strand, within QEN71_RS29695 at 5.924 kb on - strand, within QEN71_RS29695 at 5.924 kb on - strand, within QEN71_RS29695 at 5.983 kb on + strand, within QEN71_RS29695 at 5.984 kb on - strand, within QEN71_RS29695 at 6.055 kb on + strand, within QEN71_RS29695 at 6.055 kb on + strand, within QEN71_RS29695 at 6.055 kb on + strand, within QEN71_RS29695 at 6.055 kb on + strand, within QEN71_RS29695 at 6.056 kb on - strand, within QEN71_RS29695 at 6.056 kb on - strand, within QEN71_RS29695 at 6.172 kb on + strand, within QEN71_RS29695 at 6.172 kb on + strand, within QEN71_RS29695 at 6.172 kb on + strand, within QEN71_RS29695 at 6.172 kb on + strand, within QEN71_RS29695 at 6.173 kb on - strand, within QEN71_RS29695 at 6.173 kb on - strand, within QEN71_RS29695 at 6.173 kb on - strand, within QEN71_RS29695 at 6.173 kb on - strand, within QEN71_RS29695 at 6.196 kb on + strand, within QEN71_RS29695 at 6.196 kb on + strand, within QEN71_RS29695 at 6.197 kb on - strand, within QEN71_RS29695 at 6.197 kb on - strand, within QEN71_RS29695 at 6.259 kb on + strand at 6.259 kb on + strand at 6.260 kb on - strand at 6.322 kb on + strand at 6.392 kb on - strand at 6.392 kb on - strand at 6.415 kb on + strand at 6.416 kb on - strand at 6.416 kb on - strand at 6.547 kb on + strand at 6.547 kb on + strand at 6.547 kb on + strand at 6.548 kb on - strand at 6.677 kb on + strand, within QEN71_RS29700 at 6.677 kb on + strand, within QEN71_RS29700 at 6.757 kb on + strand, within QEN71_RS29700 at 6.757 kb on + strand, within QEN71_RS29700 at 6.758 kb on - strand, within QEN71_RS29700 at 6.758 kb on - strand, within QEN71_RS29700 at 6.760 kb on + strand, within QEN71_RS29700 at 6.760 kb on + strand, within QEN71_RS29700 at 6.760 kb on + strand, within QEN71_RS29700 at 6.970 kb on + strand, within QEN71_RS29700 at 6.970 kb on + strand, within QEN71_RS29700 at 6.971 kb on - strand, within QEN71_RS29700 at 6.971 kb on - strand, within QEN71_RS29700 at 7.006 kb on + strand, within QEN71_RS29700 at 7.006 kb on + strand, within QEN71_RS29700 at 7.007 kb on - strand, within QEN71_RS29700 at 7.034 kb on - strand, within QEN71_RS29700 at 7.034 kb on - strand, within QEN71_RS29700 at 7.055 kb on - strand, within QEN71_RS29700 at 7.055 kb on - strand, within QEN71_RS29700 at 7.175 kb on - strand, within QEN71_RS29700 at 7.175 kb on - strand, within QEN71_RS29700 at 7.390 kb on + strand, within QEN71_RS29700 at 7.390 kb on + strand, within QEN71_RS29700 at 7.390 kb on + strand, within QEN71_RS29700 at 7.391 kb on - strand, within QEN71_RS29700 at 7.414 kb on + strand, within QEN71_RS29700 at 7.414 kb on + strand, within QEN71_RS29700 at 7.414 kb on + strand, within QEN71_RS29700 at 7.415 kb on - strand, within QEN71_RS29700 at 7.415 kb on - strand, within QEN71_RS29700 at 7.415 kb on - strand, within QEN71_RS29700 at 7.415 kb on - strand, within QEN71_RS29700 at 7.415 kb on - strand, within QEN71_RS29700 at 7.415 kb on - strand, within QEN71_RS29700 at 7.415 kb on - strand, within QEN71_RS29700 at 7.420 kb on + strand, within QEN71_RS29700 at 7.420 kb on + strand, within QEN71_RS29700 at 7.420 kb on + strand, within QEN71_RS29700 at 7.420 kb on + strand, within QEN71_RS29700 at 7.420 kb on + strand, within QEN71_RS29700 at 7.420 kb on + strand, within QEN71_RS29700 at 7.420 kb on + strand, within QEN71_RS29700 at 7.421 kb on - strand, within QEN71_RS29700 at 7.421 kb on - strand, within QEN71_RS29700 at 7.421 kb on - strand, within QEN71_RS29700 at 7.421 kb on - strand, within QEN71_RS29700 at 7.421 kb on - strand, within QEN71_RS29700 at 7.421 kb on - strand, within QEN71_RS29700
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 3,351 + +0.4 3,352 - -0.7 3,394 + -0.7 3,394 + +0.1 3,394 + +0.2 3,394 + -0.5 3,395 - -0.7 3,597 + -0.9 3,597 + +0.3 3,597 + +0.7 3,597 + +0.1 3,597 + +0.7 3,597 + -0.9 3,597 + -0.4 3,597 + +0.9 3,597 + -0.9 3,598 - -0.7 3,598 - -0.5 3,598 - -0.3 3,598 - +0.3 3,598 - -0.6 3,598 - -0.8 3,598 - +1.2 3,598 - -1.2 3,598 - -1.9 3,598 - -0.0 3,675 + -1.0 3,676 - +1.6 3,782 + QEN71_RS29690 0.58 -0.7 3,782 + QEN71_RS29690 0.58 +2.5 3,840 + +0.4 3,841 - +1.7 3,941 - +1.1 3,944 + -1.5 3,945 - +0.6 3,945 - -0.5 3,945 - +1.0 3,945 - -1.9 3,946 + +1.5 3,947 - +0.3 3,947 - +0.3 3,947 - -0.5 3,962 + -1.0 3,962 + -0.1 4,107 + -0.5 4,107 + +1.6 4,107 + +0.9 4,107 + +1.5 4,136 - +0.5 4,203 + +0.0 4,203 + -0.9 4,203 + +0.9 4,203 + +0.2 4,203 + -2.6 4,203 + -0.1 4,204 - -0.6 4,204 - -0.6 4,204 - -1.7 4,204 - -0.6 4,204 - +0.1 4,204 - -0.0 4,204 - -0.1 4,204 - -1.1 4,204 - +1.9 4,236 + -1.6 4,236 + -0.9 4,236 + -0.4 4,236 + -0.3 4,236 + -0.7 4,236 + -0.8 4,236 + -1.2 4,237 - +0.1 4,237 - +0.5 4,237 - -0.3 4,237 - +1.0 4,237 - +1.0 4,257 + -0.5 4,257 + -0.2 4,257 + -0.1 4,257 + +0.2 4,257 + -0.7 4,257 + +0.1 4,258 - +0.2 4,258 - -0.5 4,477 + +0.2 4,564 + QEN71_RS29695 0.14 -0.3 4,564 + QEN71_RS29695 0.14 -0.1 4,564 + QEN71_RS29695 0.14 +0.1 4,565 - QEN71_RS29695 0.14 -0.6 4,565 - QEN71_RS29695 0.14 -2.7 4,565 - QEN71_RS29695 0.14 -0.7 4,565 - QEN71_RS29695 0.14 -0.6 4,565 - QEN71_RS29695 0.14 +0.3 4,565 - QEN71_RS29695 0.14 -1.1 4,565 - QEN71_RS29695 0.14 -0.3 4,646 - QEN71_RS29695 0.18 +0.0 4,726 + QEN71_RS29695 0.21 -0.6 4,727 - QEN71_RS29695 0.21 +0.1 4,727 - QEN71_RS29695 0.21 -0.5 4,974 + QEN71_RS29695 0.32 -1.3 4,975 - QEN71_RS29695 0.32 -0.7 5,086 + QEN71_RS29695 0.37 -0.1 5,101 + QEN71_RS29695 0.38 -0.1 5,101 + QEN71_RS29695 0.38 -0.1 5,248 + QEN71_RS29695 0.45 -0.1 5,249 - QEN71_RS29695 0.45 +0.5 5,249 - QEN71_RS29695 0.45 +0.3 5,249 - QEN71_RS29695 0.45 -1.6 5,276 - QEN71_RS29695 0.46 -0.6 5,317 + QEN71_RS29695 0.48 +1.1 5,317 + QEN71_RS29695 0.48 -0.5 5,317 + QEN71_RS29695 0.48 -0.9 5,318 - QEN71_RS29695 0.48 +0.8 5,318 - QEN71_RS29695 0.48 -0.6 5,318 - QEN71_RS29695 0.48 -0.6 5,445 + QEN71_RS29695 0.54 -1.3 5,445 + QEN71_RS29695 0.54 -0.3 5,445 + QEN71_RS29695 0.54 +0.6 5,445 + QEN71_RS29695 0.54 -0.7 5,445 + QEN71_RS29695 0.54 -0.5 5,446 - QEN71_RS29695 0.54 +0.4 5,446 - QEN71_RS29695 0.54 -0.3 5,446 - QEN71_RS29695 0.54 +0.3 5,446 - QEN71_RS29695 0.54 -0.7 5,446 - QEN71_RS29695 0.54 +1.4 5,446 - QEN71_RS29695 0.54 +1.0 5,446 - QEN71_RS29695 0.54 +0.1 5,446 - QEN71_RS29695 0.54 +0.3 5,446 - QEN71_RS29695 0.54 +0.8 5,446 - QEN71_RS29695 0.54 +1.1 5,607 + QEN71_RS29695 0.61 -0.0 5,607 + QEN71_RS29695 0.61 -0.6 5,607 + QEN71_RS29695 0.61 -0.3 5,608 - QEN71_RS29695 0.61 +0.2 5,608 - QEN71_RS29695 0.61 -0.3 5,710 + QEN71_RS29695 0.66 +0.3 5,710 + QEN71_RS29695 0.66 +1.3 5,710 + QEN71_RS29695 0.66 +0.8 5,710 + QEN71_RS29695 0.66 -0.6 5,710 + QEN71_RS29695 0.66 -0.4 5,710 + QEN71_RS29695 0.66 -1.8 5,710 + QEN71_RS29695 0.66 -1.1 5,711 - QEN71_RS29695 0.66 -0.9 5,711 - QEN71_RS29695 0.66 -0.1 5,711 - QEN71_RS29695 0.66 +0.5 5,711 - QEN71_RS29695 0.66 -0.7 5,906 - QEN71_RS29695 0.74 +0.6 5,906 - QEN71_RS29695 0.74 -0.5 5,924 - QEN71_RS29695 0.75 +0.5 5,924 - QEN71_RS29695 0.75 -0.4 5,983 + QEN71_RS29695 0.78 +1.5 5,984 - QEN71_RS29695 0.78 -2.7 6,055 + QEN71_RS29695 0.81 +0.0 6,055 + QEN71_RS29695 0.81 -0.1 6,055 + QEN71_RS29695 0.81 -0.5 6,055 + QEN71_RS29695 0.81 -1.0 6,056 - QEN71_RS29695 0.81 +0.1 6,056 - QEN71_RS29695 0.81 -0.2 6,172 + QEN71_RS29695 0.86 -0.3 6,172 + QEN71_RS29695 0.86 -0.3 6,172 + QEN71_RS29695 0.86 +0.3 6,172 + QEN71_RS29695 0.86 +0.6 6,173 - QEN71_RS29695 0.86 -0.5 6,173 - QEN71_RS29695 0.86 +1.0 6,173 - QEN71_RS29695 0.86 -0.8 6,173 - QEN71_RS29695 0.86 -0.8 6,196 + QEN71_RS29695 0.88 +0.3 6,196 + QEN71_RS29695 0.88 -0.5 6,197 - QEN71_RS29695 0.88 +0.9 6,197 - QEN71_RS29695 0.88 +0.7 6,259 + -0.0 6,259 + +1.2 6,260 - +0.4 6,322 + +0.8 6,392 - -1.0 6,392 - +0.9 6,415 + +0.3 6,416 - -0.8 6,416 - +0.8 6,547 + -0.2 6,547 + +1.5 6,547 + +0.5 6,548 - -0.0 6,677 + QEN71_RS29700 0.16 +0.6 6,677 + QEN71_RS29700 0.16 -0.7 6,757 + QEN71_RS29700 0.20 +0.6 6,757 + QEN71_RS29700 0.20 -0.9 6,758 - QEN71_RS29700 0.20 -0.1 6,758 - QEN71_RS29700 0.20 +0.5 6,760 + QEN71_RS29700 0.21 +0.5 6,760 + QEN71_RS29700 0.21 +0.6 6,760 + QEN71_RS29700 0.21 -0.5 6,970 + QEN71_RS29700 0.33 +1.1 6,970 + QEN71_RS29700 0.33 +0.4 6,971 - QEN71_RS29700 0.34 +0.3 6,971 - QEN71_RS29700 0.34 -1.2 7,006 + QEN71_RS29700 0.36 +0.4 7,006 + QEN71_RS29700 0.36 -0.3 7,007 - QEN71_RS29700 0.36 +0.4 7,034 - QEN71_RS29700 0.37 -2.4 7,034 - QEN71_RS29700 0.37 +1.6 7,055 - QEN71_RS29700 0.39 -1.0 7,055 - QEN71_RS29700 0.39 +0.2 7,175 - QEN71_RS29700 0.46 +0.7 7,175 - QEN71_RS29700 0.46 +0.9 7,390 + QEN71_RS29700 0.59 -0.4 7,390 + QEN71_RS29700 0.59 -0.5 7,390 + QEN71_RS29700 0.59 +1.2 7,391 - QEN71_RS29700 0.59 +0.4 7,414 + QEN71_RS29700 0.61 -0.9 7,414 + QEN71_RS29700 0.61 +0.7 7,414 + QEN71_RS29700 0.61 -0.1 7,415 - QEN71_RS29700 0.61 +0.5 7,415 - QEN71_RS29700 0.61 -0.1 7,415 - QEN71_RS29700 0.61 +1.1 7,415 - QEN71_RS29700 0.61 -0.1 7,415 - QEN71_RS29700 0.61 -0.5 7,415 - QEN71_RS29700 0.61 +0.6 7,415 - QEN71_RS29700 0.61 +0.4 7,420 + QEN71_RS29700 0.61 +0.2 7,420 + QEN71_RS29700 0.61 +0.2 7,420 + QEN71_RS29700 0.61 +0.2 7,420 + QEN71_RS29700 0.61 +0.0 7,420 + QEN71_RS29700 0.61 -0.4 7,420 + QEN71_RS29700 0.61 -1.3 7,420 + QEN71_RS29700 0.61 -0.4 7,421 - QEN71_RS29700 0.61 +1.4 7,421 - QEN71_RS29700 0.61 +1.1 7,421 - QEN71_RS29700 0.61 -1.3 7,421 - QEN71_RS29700 0.61 +1.9 7,421 - QEN71_RS29700 0.61 -0.1 7,421 - QEN71_RS29700 0.61 -0.8
Or see this region's nucleotide sequence