Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS19005

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS18995 and QEN71_RS19000 are separated by 19 nucleotidesQEN71_RS19000 and QEN71_RS19005 are separated by 89 nucleotidesQEN71_RS19005 and QEN71_RS19010 are separated by 170 nucleotides QEN71_RS18995: QEN71_RS18995 - ATPase domain-containing protein, at 4,227,276 to 4,228,715 _RS18995 QEN71_RS19000: QEN71_RS19000 - response regulator, at 4,228,735 to 4,229,130 _RS19000 QEN71_RS19005: QEN71_RS19005 - response regulator, at 4,229,220 to 4,229,576 _RS19005 QEN71_RS19010: QEN71_RS19010 - ATP-binding protein, at 4,229,747 to 4,231,210 _RS19010 Position (kb) 4229 4230Strain fitness (log2 ratio) -2 -1 0 1 2at 4228.293 kb on + strand, within QEN71_RS18995at 4228.293 kb on + strand, within QEN71_RS18995at 4228.293 kb on + strand, within QEN71_RS18995at 4228.294 kb on - strand, within QEN71_RS18995at 4228.294 kb on - strand, within QEN71_RS18995at 4228.294 kb on - strand, within QEN71_RS18995at 4228.536 kb on - strand, within QEN71_RS18995at 4228.536 kb on - strand, within QEN71_RS18995at 4228.575 kb on - strandat 4228.741 kb on - strandat 4228.741 kb on - strandat 4228.811 kb on - strand, within QEN71_RS19000at 4228.812 kb on + strand, within QEN71_RS19000at 4228.812 kb on + strand, within QEN71_RS19000at 4228.812 kb on + strand, within QEN71_RS19000at 4228.813 kb on - strand, within QEN71_RS19000at 4228.813 kb on - strand, within QEN71_RS19000at 4228.813 kb on - strand, within QEN71_RS19000at 4228.813 kb on - strand, within QEN71_RS19000at 4228.813 kb on - strand, within QEN71_RS19000at 4228.813 kb on - strand, within QEN71_RS19000at 4228.813 kb on - strand, within QEN71_RS19000at 4228.813 kb on - strand, within QEN71_RS19000at 4228.955 kb on + strand, within QEN71_RS19000at 4228.955 kb on + strand, within QEN71_RS19000at 4228.955 kb on + strand, within QEN71_RS19000at 4228.955 kb on + strand, within QEN71_RS19000at 4228.955 kb on + strand, within QEN71_RS19000at 4228.956 kb on - strand, within QEN71_RS19000at 4228.956 kb on - strand, within QEN71_RS19000at 4228.956 kb on - strand, within QEN71_RS19000at 4229.286 kb on + strand, within QEN71_RS19005at 4229.286 kb on + strand, within QEN71_RS19005at 4229.286 kb on + strand, within QEN71_RS19005at 4229.286 kb on + strand, within QEN71_RS19005at 4229.287 kb on - strand, within QEN71_RS19005at 4229.287 kb on - strand, within QEN71_RS19005at 4229.302 kb on + strand, within QEN71_RS19005at 4229.302 kb on + strand, within QEN71_RS19005at 4229.302 kb on + strand, within QEN71_RS19005at 4229.302 kb on + strand, within QEN71_RS19005at 4229.302 kb on + strand, within QEN71_RS19005at 4229.302 kb on + strand, within QEN71_RS19005at 4229.302 kb on + strand, within QEN71_RS19005at 4229.303 kb on - strand, within QEN71_RS19005at 4229.455 kb on + strand, within QEN71_RS19005at 4229.455 kb on + strand, within QEN71_RS19005at 4229.456 kb on - strand, within QEN71_RS19005at 4229.462 kb on + strand, within QEN71_RS19005at 4229.462 kb on + strand, within QEN71_RS19005at 4229.462 kb on + strand, within QEN71_RS19005at 4229.462 kb on + strand, within QEN71_RS19005at 4229.462 kb on + strand, within QEN71_RS19005at 4229.462 kb on + strand, within QEN71_RS19005at 4229.463 kb on - strand, within QEN71_RS19005at 4229.463 kb on - strand, within QEN71_RS19005at 4229.463 kb on - strand, within QEN71_RS19005at 4229.463 kb on - strand, within QEN71_RS19005at 4229.463 kb on - strand, within QEN71_RS19005at 4229.472 kb on + strand, within QEN71_RS19005at 4229.472 kb on + strand, within QEN71_RS19005at 4229.473 kb on - strand, within QEN71_RS19005at 4229.492 kb on + strand, within QEN71_RS19005at 4229.564 kb on + strandat 4229.565 kb on - strandat 4229.565 kb on - strandat 4229.610 kb on + strandat 4229.728 kb on - strandat 4229.811 kb on + strandat 4229.812 kb on - strandat 4229.812 kb on - strandat 4229.812 kb on - strandat 4229.812 kb on - strandat 4229.812 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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4,228,293 + QEN71_RS18995 0.71 -1.2
4,228,293 + QEN71_RS18995 0.71 -2.0
4,228,293 + QEN71_RS18995 0.71 -0.7
4,228,294 - QEN71_RS18995 0.71 -1.1
4,228,294 - QEN71_RS18995 0.71 +0.6
4,228,294 - QEN71_RS18995 0.71 -1.3
4,228,536 - QEN71_RS18995 0.88 -0.5
4,228,536 - QEN71_RS18995 0.88 -1.5
4,228,575 - +0.7
4,228,741 - +1.0
4,228,741 - +0.1
4,228,811 - QEN71_RS19000 0.19 +0.5
4,228,812 + QEN71_RS19000 0.19 +0.1
4,228,812 + QEN71_RS19000 0.19 -1.4
4,228,812 + QEN71_RS19000 0.19 -2.7
4,228,813 - QEN71_RS19000 0.20 -0.6
4,228,813 - QEN71_RS19000 0.20 +1.6
4,228,813 - QEN71_RS19000 0.20 +0.8
4,228,813 - QEN71_RS19000 0.20 -0.7
4,228,813 - QEN71_RS19000 0.20 +1.4
4,228,813 - QEN71_RS19000 0.20 -1.0
4,228,813 - QEN71_RS19000 0.20 -1.5
4,228,813 - QEN71_RS19000 0.20 -0.1
4,228,955 + QEN71_RS19000 0.56 -0.2
4,228,955 + QEN71_RS19000 0.56 -0.2
4,228,955 + QEN71_RS19000 0.56 -0.7
4,228,955 + QEN71_RS19000 0.56 -1.0
4,228,955 + QEN71_RS19000 0.56 +1.2
4,228,956 - QEN71_RS19000 0.56 -0.4
4,228,956 - QEN71_RS19000 0.56 -0.4
4,228,956 - QEN71_RS19000 0.56 -0.5
4,229,286 + QEN71_RS19005 0.18 +1.1
4,229,286 + QEN71_RS19005 0.18 +2.4
4,229,286 + QEN71_RS19005 0.18 +1.4
4,229,286 + QEN71_RS19005 0.18 +1.1
4,229,287 - QEN71_RS19005 0.19 -0.2
4,229,287 - QEN71_RS19005 0.19 -0.3
4,229,302 + QEN71_RS19005 0.23 +0.9
4,229,302 + QEN71_RS19005 0.23 +0.8
4,229,302 + QEN71_RS19005 0.23 +0.8
4,229,302 + QEN71_RS19005 0.23 +1.5
4,229,302 + QEN71_RS19005 0.23 +0.5
4,229,302 + QEN71_RS19005 0.23 +0.6
4,229,302 + QEN71_RS19005 0.23 +0.8
4,229,303 - QEN71_RS19005 0.23 +0.0
4,229,455 + QEN71_RS19005 0.66 +1.1
4,229,455 + QEN71_RS19005 0.66 +1.1
4,229,456 - QEN71_RS19005 0.66 -1.0
4,229,462 + QEN71_RS19005 0.68 +1.3
4,229,462 + QEN71_RS19005 0.68 +0.8
4,229,462 + QEN71_RS19005 0.68 +1.0
4,229,462 + QEN71_RS19005 0.68 +1.3
4,229,462 + QEN71_RS19005 0.68 +1.1
4,229,462 + QEN71_RS19005 0.68 +0.8
4,229,463 - QEN71_RS19005 0.68 -0.3
4,229,463 - QEN71_RS19005 0.68 -0.7
4,229,463 - QEN71_RS19005 0.68 -0.8
4,229,463 - QEN71_RS19005 0.68 -2.2
4,229,463 - QEN71_RS19005 0.68 +0.3
4,229,472 + QEN71_RS19005 0.71 +1.1
4,229,472 + QEN71_RS19005 0.71 +1.0
4,229,473 - QEN71_RS19005 0.71 -0.0
4,229,492 + QEN71_RS19005 0.76 +1.3
4,229,564 + +0.8
4,229,565 - +0.1
4,229,565 - +0.0
4,229,610 + +0.6
4,229,728 - -1.2
4,229,811 + -1.2
4,229,812 - -0.6
4,229,812 - +0.1
4,229,812 - -0.2
4,229,812 - -0.3
4,229,812 - +1.0

Or see this region's nucleotide sequence