Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS08790

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS08785 and QEN71_RS08790 overlap by 4 nucleotidesQEN71_RS08790 and QEN71_RS08795 are separated by 315 nucleotides QEN71_RS08785: QEN71_RS08785 - sodium:solute symporter, at 1,973,806 to 1,975,284 _RS08785 QEN71_RS08790: QEN71_RS08790 - DUF3311 domain-containing protein, at 1,975,281 to 1,975,493 _RS08790 QEN71_RS08795: QEN71_RS08795 - MarC family protein, at 1,975,809 to 1,976,480 _RS08795 Position (kb) 1975 1976Strain fitness (log2 ratio) -2 -1 0 1 2at 1974.293 kb on - strand, within QEN71_RS08785at 1974.293 kb on - strand, within QEN71_RS08785at 1974.293 kb on - strand, within QEN71_RS08785at 1974.293 kb on - strand, within QEN71_RS08785at 1974.403 kb on + strand, within QEN71_RS08785at 1974.403 kb on + strand, within QEN71_RS08785at 1974.458 kb on + strand, within QEN71_RS08785at 1974.459 kb on - strand, within QEN71_RS08785at 1974.528 kb on + strand, within QEN71_RS08785at 1974.529 kb on - strand, within QEN71_RS08785at 1974.529 kb on - strand, within QEN71_RS08785at 1974.668 kb on + strand, within QEN71_RS08785at 1974.669 kb on - strand, within QEN71_RS08785at 1974.669 kb on - strand, within QEN71_RS08785at 1974.686 kb on + strand, within QEN71_RS08785at 1974.687 kb on - strand, within QEN71_RS08785at 1974.687 kb on - strand, within QEN71_RS08785at 1974.687 kb on - strand, within QEN71_RS08785at 1974.687 kb on - strand, within QEN71_RS08785at 1974.776 kb on + strand, within QEN71_RS08785at 1974.776 kb on + strand, within QEN71_RS08785at 1974.776 kb on + strand, within QEN71_RS08785at 1974.776 kb on + strand, within QEN71_RS08785at 1974.776 kb on + strand, within QEN71_RS08785at 1974.777 kb on - strand, within QEN71_RS08785at 1974.777 kb on - strand, within QEN71_RS08785at 1974.777 kb on - strand, within QEN71_RS08785at 1974.777 kb on - strand, within QEN71_RS08785at 1974.777 kb on - strand, within QEN71_RS08785at 1974.777 kb on - strand, within QEN71_RS08785at 1974.777 kb on - strand, within QEN71_RS08785at 1974.777 kb on - strand, within QEN71_RS08785at 1974.944 kb on + strand, within QEN71_RS08785at 1975.034 kb on + strand, within QEN71_RS08785at 1975.035 kb on - strand, within QEN71_RS08785at 1975.035 kb on - strand, within QEN71_RS08785at 1975.035 kb on - strand, within QEN71_RS08785at 1975.035 kb on - strand, within QEN71_RS08785at 1975.050 kb on - strand, within QEN71_RS08785at 1975.061 kb on + strand, within QEN71_RS08785at 1975.061 kb on + strand, within QEN71_RS08785at 1975.061 kb on + strand, within QEN71_RS08785at 1975.061 kb on + strand, within QEN71_RS08785at 1975.061 kb on + strand, within QEN71_RS08785at 1975.062 kb on - strand, within QEN71_RS08785at 1975.062 kb on - strand, within QEN71_RS08785at 1975.062 kb on - strand, within QEN71_RS08785at 1975.064 kb on + strand, within QEN71_RS08785at 1975.064 kb on + strand, within QEN71_RS08785at 1975.085 kb on + strand, within QEN71_RS08785at 1975.226 kb on - strandat 1975.235 kb on + strandat 1975.235 kb on + strandat 1975.235 kb on + strandat 1975.236 kb on - strandat 1975.236 kb on - strandat 1975.236 kb on - strandat 1975.336 kb on + strand, within QEN71_RS08790at 1975.337 kb on - strand, within QEN71_RS08790at 1975.337 kb on - strand, within QEN71_RS08790at 1975.627 kb on + strandat 1975.628 kb on - strandat 1975.628 kb on - strandat 1975.639 kb on + strandat 1975.701 kb on + strandat 1975.701 kb on + strandat 1975.701 kb on + strandat 1975.702 kb on - strandat 1975.702 kb on - strandat 1975.702 kb on - strandat 1975.737 kb on + strandat 1975.737 kb on + strandat 1975.737 kb on + strandat 1975.737 kb on + strandat 1975.737 kb on + strandat 1975.737 kb on + strandat 1975.738 kb on - strandat 1975.738 kb on - strandat 1975.738 kb on - strandat 1975.739 kb on + strandat 1975.739 kb on + strandat 1975.739 kb on + strandat 1975.740 kb on - strandat 1975.740 kb on - strandat 1975.740 kb on - strandat 1975.984 kb on + strand, within QEN71_RS08795at 1975.984 kb on + strand, within QEN71_RS08795at 1975.984 kb on + strand, within QEN71_RS08795at 1975.984 kb on + strand, within QEN71_RS08795at 1975.984 kb on + strand, within QEN71_RS08795at 1975.985 kb on - strand, within QEN71_RS08795at 1975.985 kb on - strand, within QEN71_RS08795at 1976.319 kb on + strand, within QEN71_RS08795at 1976.319 kb on + strand, within QEN71_RS08795at 1976.319 kb on + strand, within QEN71_RS08795at 1976.319 kb on + strand, within QEN71_RS08795at 1976.319 kb on + strand, within QEN71_RS08795at 1976.319 kb on + strand, within QEN71_RS08795at 1976.319 kb on + strand, within QEN71_RS08795at 1976.319 kb on + strand, within QEN71_RS08795at 1976.319 kb on + strand, within QEN71_RS08795at 1976.319 kb on + strand, within QEN71_RS08795at 1976.320 kb on - strand, within QEN71_RS08795at 1976.320 kb on - strand, within QEN71_RS08795at 1976.320 kb on - strand, within QEN71_RS08795at 1976.320 kb on - strand, within QEN71_RS08795at 1976.320 kb on - strand, within QEN71_RS08795at 1976.320 kb on - strand, within QEN71_RS08795at 1976.321 kb on + strand, within QEN71_RS08795at 1976.321 kb on + strand, within QEN71_RS08795at 1976.321 kb on + strand, within QEN71_RS08795at 1976.321 kb on + strand, within QEN71_RS08795at 1976.322 kb on - strand, within QEN71_RS08795

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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1,974,293 - QEN71_RS08785 0.33 -0.7
1,974,293 - QEN71_RS08785 0.33 +0.1
1,974,293 - QEN71_RS08785 0.33 +0.3
1,974,293 - QEN71_RS08785 0.33 -0.7
1,974,403 + QEN71_RS08785 0.40 +0.8
1,974,403 + QEN71_RS08785 0.40 +0.2
1,974,458 + QEN71_RS08785 0.44 +0.9
1,974,459 - QEN71_RS08785 0.44 -0.5
1,974,528 + QEN71_RS08785 0.49 -0.5
1,974,529 - QEN71_RS08785 0.49 -0.1
1,974,529 - QEN71_RS08785 0.49 -0.1
1,974,668 + QEN71_RS08785 0.58 -0.9
1,974,669 - QEN71_RS08785 0.58 +0.9
1,974,669 - QEN71_RS08785 0.58 -0.4
1,974,686 + QEN71_RS08785 0.59 -2.0
1,974,687 - QEN71_RS08785 0.60 -0.1
1,974,687 - QEN71_RS08785 0.60 +1.9
1,974,687 - QEN71_RS08785 0.60 -0.9
1,974,687 - QEN71_RS08785 0.60 -0.0
1,974,776 + QEN71_RS08785 0.66 -0.3
1,974,776 + QEN71_RS08785 0.66 +0.5
1,974,776 + QEN71_RS08785 0.66 +1.1
1,974,776 + QEN71_RS08785 0.66 -0.8
1,974,776 + QEN71_RS08785 0.66 +0.9
1,974,777 - QEN71_RS08785 0.66 +0.1
1,974,777 - QEN71_RS08785 0.66 -0.2
1,974,777 - QEN71_RS08785 0.66 -0.9
1,974,777 - QEN71_RS08785 0.66 -0.5
1,974,777 - QEN71_RS08785 0.66 +0.5
1,974,777 - QEN71_RS08785 0.66 -0.2
1,974,777 - QEN71_RS08785 0.66 -0.6
1,974,777 - QEN71_RS08785 0.66 +0.8
1,974,944 + QEN71_RS08785 0.77 +1.0
1,975,034 + QEN71_RS08785 0.83 +0.1
1,975,035 - QEN71_RS08785 0.83 -0.1
1,975,035 - QEN71_RS08785 0.83 -0.2
1,975,035 - QEN71_RS08785 0.83 -0.6
1,975,035 - QEN71_RS08785 0.83 -0.5
1,975,050 - QEN71_RS08785 0.84 -0.3
1,975,061 + QEN71_RS08785 0.85 -2.0
1,975,061 + QEN71_RS08785 0.85 +1.1
1,975,061 + QEN71_RS08785 0.85 -0.1
1,975,061 + QEN71_RS08785 0.85 +1.6
1,975,061 + QEN71_RS08785 0.85 -0.3
1,975,062 - QEN71_RS08785 0.85 +0.3
1,975,062 - QEN71_RS08785 0.85 -0.2
1,975,062 - QEN71_RS08785 0.85 +0.0
1,975,064 + QEN71_RS08785 0.85 -1.6
1,975,064 + QEN71_RS08785 0.85 +0.3
1,975,085 + QEN71_RS08785 0.86 -0.6
1,975,226 - -2.4
1,975,235 + -0.3
1,975,235 + -1.1
1,975,235 + -0.4
1,975,236 - +0.2
1,975,236 - -0.9
1,975,236 - -0.6
1,975,336 + QEN71_RS08790 0.26 -0.2
1,975,337 - QEN71_RS08790 0.26 -0.2
1,975,337 - QEN71_RS08790 0.26 -1.1
1,975,627 + +0.1
1,975,628 - -0.7
1,975,628 - +0.1
1,975,639 + -0.1
1,975,701 + -1.5
1,975,701 + +0.3
1,975,701 + -0.1
1,975,702 - -0.7
1,975,702 - -1.3
1,975,702 - -2.2
1,975,737 + +0.9
1,975,737 + -1.7
1,975,737 + +0.4
1,975,737 + -0.5
1,975,737 + +0.1
1,975,737 + -1.1
1,975,738 - -0.9
1,975,738 - -0.4
1,975,738 - -0.1
1,975,739 + -0.1
1,975,739 + +0.4
1,975,739 + +0.0
1,975,740 - -0.8
1,975,740 - +0.7
1,975,740 - +0.2
1,975,984 + QEN71_RS08795 0.26 -1.0
1,975,984 + QEN71_RS08795 0.26 +0.3
1,975,984 + QEN71_RS08795 0.26 -0.4
1,975,984 + QEN71_RS08795 0.26 +0.2
1,975,984 + QEN71_RS08795 0.26 -0.1
1,975,985 - QEN71_RS08795 0.26 +0.1
1,975,985 - QEN71_RS08795 0.26 -1.1
1,976,319 + QEN71_RS08795 0.76 -1.2
1,976,319 + QEN71_RS08795 0.76 -0.4
1,976,319 + QEN71_RS08795 0.76 +0.3
1,976,319 + QEN71_RS08795 0.76 +0.7
1,976,319 + QEN71_RS08795 0.76 +0.1
1,976,319 + QEN71_RS08795 0.76 -0.1
1,976,319 + QEN71_RS08795 0.76 -0.1
1,976,319 + QEN71_RS08795 0.76 -1.1
1,976,319 + QEN71_RS08795 0.76 -1.2
1,976,319 + QEN71_RS08795 0.76 +0.1
1,976,320 - QEN71_RS08795 0.76 -1.5
1,976,320 - QEN71_RS08795 0.76 -0.5
1,976,320 - QEN71_RS08795 0.76 +0.9
1,976,320 - QEN71_RS08795 0.76 -0.8
1,976,320 - QEN71_RS08795 0.76 -0.8
1,976,320 - QEN71_RS08795 0.76 -0.5
1,976,321 + QEN71_RS08795 0.76 -0.8
1,976,321 + QEN71_RS08795 0.76 -0.7
1,976,321 + QEN71_RS08795 0.76 +0.4
1,976,321 + QEN71_RS08795 0.76 -0.9
1,976,322 - QEN71_RS08795 0.76 -1.0

Or see this region's nucleotide sequence