Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS02785

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS02780 and QEN71_RS02785 are separated by 98 nucleotidesQEN71_RS02785 and QEN71_RS02790 are separated by 462 nucleotidesQEN71_RS02790 and QEN71_RS02795 are separated by 201 nucleotides QEN71_RS02780: QEN71_RS02780 - UDP-N-acetylmuramate dehydrogenase, at 622,240 to 623,280 _RS02780 QEN71_RS02785: QEN71_RS02785 - ornithine carbamoyltransferase, at 623,379 to 624,308 _RS02785 QEN71_RS02790: QEN71_RS02790 - DUF3579 domain-containing protein, at 624,771 to 625,106 _RS02790 QEN71_RS02795: QEN71_RS02795 - 30S ribosomal protein S20, at 625,308 to 625,586 _RS02795 Position (kb) 623 624 625Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 623.743 kb on + strand, within QEN71_RS02785at 623.743 kb on + strand, within QEN71_RS02785at 623.743 kb on + strand, within QEN71_RS02785at 623.744 kb on - strand, within QEN71_RS02785at 623.806 kb on + strand, within QEN71_RS02785at 623.806 kb on + strand, within QEN71_RS02785at 623.806 kb on + strand, within QEN71_RS02785at 623.806 kb on + strand, within QEN71_RS02785at 623.806 kb on + strand, within QEN71_RS02785at 623.806 kb on + strand, within QEN71_RS02785at 623.806 kb on + strand, within QEN71_RS02785at 623.806 kb on + strand, within QEN71_RS02785at 623.807 kb on - strand, within QEN71_RS02785at 623.807 kb on - strand, within QEN71_RS02785at 623.807 kb on - strand, within QEN71_RS02785at 623.807 kb on - strand, within QEN71_RS02785at 623.807 kb on - strand, within QEN71_RS02785at 623.807 kb on - strand, within QEN71_RS02785at 623.807 kb on - strand, within QEN71_RS02785at 623.807 kb on - strand, within QEN71_RS02785at 623.807 kb on - strand, within QEN71_RS02785at 623.807 kb on - strand, within QEN71_RS02785at 623.872 kb on + strand, within QEN71_RS02785at 623.872 kb on + strand, within QEN71_RS02785at 623.872 kb on + strand, within QEN71_RS02785at 623.872 kb on + strand, within QEN71_RS02785at 623.872 kb on + strand, within QEN71_RS02785at 623.872 kb on + strand, within QEN71_RS02785at 623.873 kb on - strand, within QEN71_RS02785at 623.873 kb on - strand, within QEN71_RS02785at 623.873 kb on - strand, within QEN71_RS02785at 623.873 kb on - strand, within QEN71_RS02785at 623.873 kb on - strand, within QEN71_RS02785at 623.875 kb on + strand, within QEN71_RS02785at 623.875 kb on + strand, within QEN71_RS02785at 623.875 kb on + strand, within QEN71_RS02785at 623.875 kb on + strand, within QEN71_RS02785at 623.875 kb on + strand, within QEN71_RS02785at 623.876 kb on - strand, within QEN71_RS02785at 623.876 kb on - strand, within QEN71_RS02785at 623.876 kb on - strand, within QEN71_RS02785at 623.876 kb on - strand, within QEN71_RS02785at 623.911 kb on + strand, within QEN71_RS02785at 623.912 kb on - strand, within QEN71_RS02785at 623.912 kb on - strand, within QEN71_RS02785at 623.988 kb on - strand, within QEN71_RS02785at 623.988 kb on - strand, within QEN71_RS02785at 623.988 kb on - strand, within QEN71_RS02785at 624.190 kb on + strand, within QEN71_RS02785at 624.190 kb on + strand, within QEN71_RS02785at 624.190 kb on + strand, within QEN71_RS02785at 624.190 kb on + strand, within QEN71_RS02785at 624.190 kb on + strand, within QEN71_RS02785at 624.190 kb on + strand, within QEN71_RS02785at 624.190 kb on + strand, within QEN71_RS02785at 624.190 kb on + strand, within QEN71_RS02785at 624.190 kb on + strand, within QEN71_RS02785at 624.191 kb on - strand, within QEN71_RS02785at 624.191 kb on - strand, within QEN71_RS02785at 624.191 kb on - strand, within QEN71_RS02785at 624.191 kb on - strand, within QEN71_RS02785at 624.191 kb on - strand, within QEN71_RS02785at 624.191 kb on - strand, within QEN71_RS02785at 624.191 kb on - strand, within QEN71_RS02785at 624.191 kb on - strand, within QEN71_RS02785at 624.191 kb on - strand, within QEN71_RS02785at 624.191 kb on - strand, within QEN71_RS02785at 624.191 kb on - strand, within QEN71_RS02785at 624.191 kb on - strand, within QEN71_RS02785at 624.191 kb on - strand, within QEN71_RS02785at 624.191 kb on - strand, within QEN71_RS02785at 624.191 kb on - strand, within QEN71_RS02785at 624.191 kb on - strand, within QEN71_RS02785at 624.191 kb on - strand, within QEN71_RS02785at 624.191 kb on - strand, within QEN71_RS02785at 624.191 kb on - strand, within QEN71_RS02785at 624.191 kb on - strand, within QEN71_RS02785at 624.199 kb on + strand, within QEN71_RS02785at 624.199 kb on + strand, within QEN71_RS02785at 624.199 kb on + strand, within QEN71_RS02785at 624.199 kb on + strand, within QEN71_RS02785at 624.199 kb on + strand, within QEN71_RS02785at 624.199 kb on + strand, within QEN71_RS02785at 624.200 kb on - strand, within QEN71_RS02785at 624.200 kb on - strand, within QEN71_RS02785at 624.200 kb on - strand, within QEN71_RS02785at 624.244 kb on + strandat 624.244 kb on + strandat 624.244 kb on + strandat 624.244 kb on + strandat 624.244 kb on + strandat 624.244 kb on + strandat 624.244 kb on + strandat 624.244 kb on + strandat 624.245 kb on - strandat 624.245 kb on - strandat 624.245 kb on - strandat 624.245 kb on - strandat 624.250 kb on + strandat 624.250 kb on + strandat 624.251 kb on - strandat 624.251 kb on - strandat 624.283 kb on + strandat 624.283 kb on + strandat 624.283 kb on + strandat 624.284 kb on - strandat 624.284 kb on - strandat 624.294 kb on - strandat 624.308 kb on + strandat 624.308 kb on + strandat 624.308 kb on + strandat 624.309 kb on - strandat 624.309 kb on - strandat 624.309 kb on - strandat 624.309 kb on - strandat 624.317 kb on + strandat 624.317 kb on + strandat 624.317 kb on + strandat 624.317 kb on + strandat 624.318 kb on - strandat 624.318 kb on - strandat 624.371 kb on - strandat 624.371 kb on - strandat 624.371 kb on - strandat 624.371 kb on - strandat 624.385 kb on + strandat 624.385 kb on + strandat 624.385 kb on + strandat 624.385 kb on + strandat 624.385 kb on + strandat 624.385 kb on + strandat 624.386 kb on - strandat 624.499 kb on + strandat 624.500 kb on - strandat 624.500 kb on - strandat 624.501 kb on + strandat 624.540 kb on + strandat 624.540 kb on + strandat 624.540 kb on + strandat 624.540 kb on + strandat 624.540 kb on + strandat 624.584 kb on + strandat 624.584 kb on + strandat 624.584 kb on + strandat 624.584 kb on + strandat 624.584 kb on + strandat 624.659 kb on + strandat 624.659 kb on + strandat 624.659 kb on + strandat 624.659 kb on + strandat 624.659 kb on + strandat 624.715 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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623,743 + QEN71_RS02785 0.39 -3.1
623,743 + QEN71_RS02785 0.39 -2.2
623,743 + QEN71_RS02785 0.39 -3.2
623,744 - QEN71_RS02785 0.39 -4.4
623,806 + QEN71_RS02785 0.46 -0.8
623,806 + QEN71_RS02785 0.46 -3.2
623,806 + QEN71_RS02785 0.46 -3.1
623,806 + QEN71_RS02785 0.46 -3.9
623,806 + QEN71_RS02785 0.46 +0.6
623,806 + QEN71_RS02785 0.46 -2.1
623,806 + QEN71_RS02785 0.46 -3.2
623,806 + QEN71_RS02785 0.46 -3.7
623,807 - QEN71_RS02785 0.46 -1.1
623,807 - QEN71_RS02785 0.46 -3.6
623,807 - QEN71_RS02785 0.46 -3.5
623,807 - QEN71_RS02785 0.46 -3.3
623,807 - QEN71_RS02785 0.46 -0.4
623,807 - QEN71_RS02785 0.46 +0.6
623,807 - QEN71_RS02785 0.46 -3.0
623,807 - QEN71_RS02785 0.46 -3.4
623,807 - QEN71_RS02785 0.46 -4.1
623,807 - QEN71_RS02785 0.46 -1.5
623,872 + QEN71_RS02785 0.53 -2.8
623,872 + QEN71_RS02785 0.53 -1.2
623,872 + QEN71_RS02785 0.53 -4.2
623,872 + QEN71_RS02785 0.53 -1.8
623,872 + QEN71_RS02785 0.53 -4.8
623,872 + QEN71_RS02785 0.53 -2.5
623,873 - QEN71_RS02785 0.53 -4.3
623,873 - QEN71_RS02785 0.53 -3.8
623,873 - QEN71_RS02785 0.53 -3.5
623,873 - QEN71_RS02785 0.53 -1.4
623,873 - QEN71_RS02785 0.53 -3.4
623,875 + QEN71_RS02785 0.53 -3.3
623,875 + QEN71_RS02785 0.53 -3.0
623,875 + QEN71_RS02785 0.53 -4.6
623,875 + QEN71_RS02785 0.53 -4.3
623,875 + QEN71_RS02785 0.53 -1.6
623,876 - QEN71_RS02785 0.53 -2.0
623,876 - QEN71_RS02785 0.53 -2.8
623,876 - QEN71_RS02785 0.53 -2.4
623,876 - QEN71_RS02785 0.53 -4.6
623,911 + QEN71_RS02785 0.57 -1.2
623,912 - QEN71_RS02785 0.57 -4.4
623,912 - QEN71_RS02785 0.57 -2.9
623,988 - QEN71_RS02785 0.65 -2.3
623,988 - QEN71_RS02785 0.65 -2.8
623,988 - QEN71_RS02785 0.65 -3.1
624,190 + QEN71_RS02785 0.87 -2.8
624,190 + QEN71_RS02785 0.87 -4.3
624,190 + QEN71_RS02785 0.87 -2.9
624,190 + QEN71_RS02785 0.87 -0.4
624,190 + QEN71_RS02785 0.87 -1.4
624,190 + QEN71_RS02785 0.87 -4.5
624,190 + QEN71_RS02785 0.87 -1.1
624,190 + QEN71_RS02785 0.87 -1.8
624,190 + QEN71_RS02785 0.87 -1.1
624,191 - QEN71_RS02785 0.87 -1.9
624,191 - QEN71_RS02785 0.87 -0.1
624,191 - QEN71_RS02785 0.87 -4.1
624,191 - QEN71_RS02785 0.87 -3.6
624,191 - QEN71_RS02785 0.87 -3.1
624,191 - QEN71_RS02785 0.87 -1.2
624,191 - QEN71_RS02785 0.87 -3.1
624,191 - QEN71_RS02785 0.87 -2.9
624,191 - QEN71_RS02785 0.87 -4.5
624,191 - QEN71_RS02785 0.87 -2.4
624,191 - QEN71_RS02785 0.87 -0.1
624,191 - QEN71_RS02785 0.87 -0.1
624,191 - QEN71_RS02785 0.87 -0.1
624,191 - QEN71_RS02785 0.87 -0.1
624,191 - QEN71_RS02785 0.87 -1.2
624,191 - QEN71_RS02785 0.87 -3.4
624,191 - QEN71_RS02785 0.87 -0.9
624,191 - QEN71_RS02785 0.87 -3.4
624,191 - QEN71_RS02785 0.87 -0.4
624,191 - QEN71_RS02785 0.87 -2.6
624,199 + QEN71_RS02785 0.88 -3.1
624,199 + QEN71_RS02785 0.88 -0.9
624,199 + QEN71_RS02785 0.88 +0.0
624,199 + QEN71_RS02785 0.88 -4.6
624,199 + QEN71_RS02785 0.88 -0.9
624,199 + QEN71_RS02785 0.88 -2.8
624,200 - QEN71_RS02785 0.88 -1.7
624,200 - QEN71_RS02785 0.88 -1.2
624,200 - QEN71_RS02785 0.88 -2.2
624,244 + -1.7
624,244 + -4.5
624,244 + -4.0
624,244 + -2.7
624,244 + -1.4
624,244 + -4.3
624,244 + -3.5
624,244 + -0.1
624,245 - -1.8
624,245 - -2.8
624,245 - -1.1
624,245 - -3.1
624,250 + -3.6
624,250 + -1.4
624,251 - -1.9
624,251 - -1.6
624,283 + -1.9
624,283 + -5.0
624,283 + -3.5
624,284 - -4.2
624,284 - -0.2
624,294 - -2.1
624,308 + -2.8
624,308 + -5.1
624,308 + -1.3
624,309 - -0.4
624,309 - +0.8
624,309 - -1.6
624,309 - -0.1
624,317 + -1.5
624,317 + -1.2
624,317 + -1.6
624,317 + -1.7
624,318 - -0.0
624,318 - +0.3
624,371 - -0.2
624,371 - -0.0
624,371 - +0.5
624,371 - +0.4
624,385 + -1.5
624,385 + -1.1
624,385 + -2.8
624,385 + -2.4
624,385 + -0.9
624,385 + +0.4
624,386 - +0.3
624,499 + +0.2
624,500 - +2.5
624,500 - +1.2
624,501 + -0.1
624,540 + +0.2
624,540 + -0.1
624,540 + +0.4
624,540 + -0.5
624,540 + +1.2
624,584 + -0.5
624,584 + -0.2
624,584 + -1.6
624,584 + -0.4
624,584 + -0.1
624,659 + +1.1
624,659 + +0.4
624,659 + +1.5
624,659 + +1.3
624,659 + +1.2
624,715 + +0.8

Or see this region's nucleotide sequence