Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS01265

Experiment: L-Rhamnose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS01260 and QEN71_RS01265 are separated by 186 nucleotidesQEN71_RS01265 and QEN71_RS01270 overlap by 4 nucleotidesQEN71_RS01270 and QEN71_RS01275 are separated by 18 nucleotides QEN71_RS01260: QEN71_RS01260 - biotin--[acetyl-CoA-carboxylase] ligase, at 285,342 to 286,247 _RS01260 QEN71_RS01265: QEN71_RS01265 - ABC transporter permease, at 286,434 to 287,573 _RS01265 QEN71_RS01270: QEN71_RS01270 - ATP-binding cassette domain-containing protein, at 287,570 to 288,460 _RS01270 QEN71_RS01275: QEN71_RS01275 - MlaD family protein, at 288,479 to 289,441 _RS01275 Position (kb) 286 287 288Strain fitness (log2 ratio) -2 -1 0 1 2at 286.255 kb on - strandat 286.255 kb on - strandat 286.255 kb on - strandat 286.255 kb on - strandat 286.255 kb on - strandat 286.255 kb on - strandat 286.255 kb on - strandat 286.255 kb on - strandat 286.255 kb on - strandat 286.255 kb on - strandat 286.255 kb on - strandat 286.255 kb on - strandat 286.259 kb on + strandat 286.259 kb on + strandat 286.395 kb on + strandat 286.395 kb on + strandat 286.395 kb on + strandat 286.395 kb on + strandat 286.395 kb on + strandat 286.395 kb on + strandat 286.395 kb on + strandat 286.395 kb on + strandat 286.396 kb on - strandat 286.396 kb on - strandat 286.396 kb on - strandat 286.396 kb on - strandat 286.396 kb on - strandat 286.396 kb on - strandat 286.396 kb on - strandat 286.396 kb on - strandat 286.396 kb on - strandat 286.396 kb on - strandat 286.396 kb on - strandat 286.407 kb on + strandat 286.408 kb on - strandat 286.440 kb on + strandat 286.440 kb on + strandat 286.440 kb on + strandat 286.440 kb on + strandat 286.440 kb on + strandat 286.440 kb on + strandat 286.440 kb on + strandat 286.440 kb on + strandat 286.440 kb on + strandat 286.440 kb on + strandat 286.440 kb on + strandat 286.440 kb on + strandat 286.440 kb on + strandat 286.440 kb on + strandat 286.441 kb on - strandat 286.441 kb on - strandat 286.668 kb on + strand, within QEN71_RS01265at 286.668 kb on + strand, within QEN71_RS01265at 286.668 kb on + strand, within QEN71_RS01265at 286.669 kb on - strand, within QEN71_RS01265at 286.669 kb on - strand, within QEN71_RS01265at 286.669 kb on - strand, within QEN71_RS01265at 286.669 kb on - strand, within QEN71_RS01265at 286.715 kb on + strand, within QEN71_RS01265at 286.715 kb on + strand, within QEN71_RS01265at 286.715 kb on + strand, within QEN71_RS01265at 286.715 kb on + strand, within QEN71_RS01265at 286.715 kb on + strand, within QEN71_RS01265at 286.716 kb on - strand, within QEN71_RS01265at 286.716 kb on - strand, within QEN71_RS01265at 286.716 kb on - strand, within QEN71_RS01265at 286.716 kb on - strand, within QEN71_RS01265at 286.768 kb on + strand, within QEN71_RS01265at 286.768 kb on + strand, within QEN71_RS01265at 286.768 kb on + strand, within QEN71_RS01265at 286.768 kb on + strand, within QEN71_RS01265at 286.769 kb on - strand, within QEN71_RS01265at 286.769 kb on - strand, within QEN71_RS01265at 286.769 kb on - strand, within QEN71_RS01265at 286.769 kb on - strand, within QEN71_RS01265at 286.769 kb on - strand, within QEN71_RS01265at 286.769 kb on - strand, within QEN71_RS01265at 286.769 kb on - strand, within QEN71_RS01265at 286.769 kb on - strand, within QEN71_RS01265at 286.830 kb on + strand, within QEN71_RS01265at 286.830 kb on + strand, within QEN71_RS01265at 286.830 kb on + strand, within QEN71_RS01265at 286.830 kb on + strand, within QEN71_RS01265at 286.831 kb on - strand, within QEN71_RS01265at 286.831 kb on - strand, within QEN71_RS01265at 286.831 kb on - strand, within QEN71_RS01265at 286.831 kb on - strand, within QEN71_RS01265at 286.831 kb on - strand, within QEN71_RS01265at 286.887 kb on - strand, within QEN71_RS01265at 286.887 kb on - strand, within QEN71_RS01265at 286.887 kb on - strand, within QEN71_RS01265at 286.929 kb on + strand, within QEN71_RS01265at 286.929 kb on + strand, within QEN71_RS01265at 286.929 kb on + strand, within QEN71_RS01265at 286.929 kb on + strand, within QEN71_RS01265at 286.929 kb on + strand, within QEN71_RS01265at 286.929 kb on + strand, within QEN71_RS01265at 286.929 kb on + strand, within QEN71_RS01265at 286.929 kb on + strand, within QEN71_RS01265at 286.929 kb on + strand, within QEN71_RS01265at 286.929 kb on + strand, within QEN71_RS01265at 286.929 kb on + strand, within QEN71_RS01265at 286.929 kb on + strand, within QEN71_RS01265at 286.930 kb on - strand, within QEN71_RS01265at 286.930 kb on - strand, within QEN71_RS01265at 286.930 kb on - strand, within QEN71_RS01265at 286.930 kb on - strand, within QEN71_RS01265at 286.930 kb on - strand, within QEN71_RS01265at 286.930 kb on - strand, within QEN71_RS01265at 286.930 kb on - strand, within QEN71_RS01265at 286.930 kb on - strand, within QEN71_RS01265at 286.930 kb on - strand, within QEN71_RS01265at 286.930 kb on - strand, within QEN71_RS01265at 286.930 kb on - strand, within QEN71_RS01265at 286.931 kb on + strand, within QEN71_RS01265at 286.931 kb on + strand, within QEN71_RS01265at 286.931 kb on + strand, within QEN71_RS01265at 286.932 kb on - strand, within QEN71_RS01265at 286.932 kb on - strand, within QEN71_RS01265at 286.998 kb on + strand, within QEN71_RS01265at 286.998 kb on + strand, within QEN71_RS01265at 286.998 kb on + strand, within QEN71_RS01265at 286.998 kb on + strand, within QEN71_RS01265at 286.998 kb on + strand, within QEN71_RS01265at 286.998 kb on + strand, within QEN71_RS01265at 286.998 kb on + strand, within QEN71_RS01265at 286.998 kb on + strand, within QEN71_RS01265at 286.998 kb on + strand, within QEN71_RS01265at 286.998 kb on + strand, within QEN71_RS01265at 286.998 kb on + strand, within QEN71_RS01265at 286.998 kb on + strand, within QEN71_RS01265at 286.998 kb on + strand, within QEN71_RS01265at 286.998 kb on + strand, within QEN71_RS01265at 286.999 kb on - strand, within QEN71_RS01265at 286.999 kb on - strand, within QEN71_RS01265at 286.999 kb on - strand, within QEN71_RS01265at 286.999 kb on - strand, within QEN71_RS01265at 286.999 kb on - strand, within QEN71_RS01265at 286.999 kb on - strand, within QEN71_RS01265at 286.999 kb on - strand, within QEN71_RS01265at 286.999 kb on - strand, within QEN71_RS01265at 286.999 kb on - strand, within QEN71_RS01265at 286.999 kb on - strand, within QEN71_RS01265at 286.999 kb on - strand, within QEN71_RS01265at 287.051 kb on + strand, within QEN71_RS01265at 287.051 kb on + strand, within QEN71_RS01265at 287.052 kb on - strand, within QEN71_RS01265at 287.060 kb on + strand, within QEN71_RS01265at 287.060 kb on + strand, within QEN71_RS01265at 287.060 kb on + strand, within QEN71_RS01265at 287.060 kb on + strand, within QEN71_RS01265at 287.060 kb on + strand, within QEN71_RS01265at 287.060 kb on + strand, within QEN71_RS01265at 287.060 kb on + strand, within QEN71_RS01265at 287.061 kb on - strand, within QEN71_RS01265at 287.061 kb on - strand, within QEN71_RS01265at 287.061 kb on - strand, within QEN71_RS01265at 287.334 kb on + strand, within QEN71_RS01265at 287.334 kb on + strand, within QEN71_RS01265at 287.334 kb on + strand, within QEN71_RS01265at 287.334 kb on + strand, within QEN71_RS01265at 287.334 kb on + strand, within QEN71_RS01265at 287.334 kb on + strand, within QEN71_RS01265at 287.334 kb on + strand, within QEN71_RS01265at 287.334 kb on + strand, within QEN71_RS01265at 287.335 kb on - strand, within QEN71_RS01265at 287.596 kb on - strandat 287.924 kb on - strand, within QEN71_RS01270at 287.924 kb on - strand, within QEN71_RS01270at 287.924 kb on - strand, within QEN71_RS01270at 287.924 kb on - strand, within QEN71_RS01270at 288.338 kb on + strand, within QEN71_RS01270at 288.338 kb on + strand, within QEN71_RS01270at 288.339 kb on - strand, within QEN71_RS01270at 288.339 kb on - strand, within QEN71_RS01270at 288.339 kb on - strand, within QEN71_RS01270at 288.487 kb on + strandat 288.487 kb on + strandat 288.487 kb on + strandat 288.488 kb on - strandat 288.488 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose (C)
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286,255 - +0.0
286,255 - +1.2
286,255 - +1.6
286,255 - -1.1
286,255 - -0.1
286,255 - +0.0
286,255 - +0.3
286,255 - -0.8
286,255 - -1.3
286,255 - -0.4
286,255 - +1.8
286,255 - +0.5
286,259 + -0.6
286,259 + +0.6
286,395 + -1.2
286,395 + +0.0
286,395 + +0.5
286,395 + +1.6
286,395 + -2.5
286,395 + -1.5
286,395 + -0.9
286,395 + -0.9
286,396 - -0.7
286,396 - -0.3
286,396 - -0.6
286,396 - -1.0
286,396 - -0.7
286,396 - +0.3
286,396 - -0.7
286,396 - -0.3
286,396 - -2.2
286,396 - +0.8
286,396 - -0.1
286,407 + +0.5
286,408 - -0.7
286,440 + -0.3
286,440 + +1.2
286,440 + -0.7
286,440 + +0.3
286,440 + -0.1
286,440 + +0.4
286,440 + +0.5
286,440 + +0.3
286,440 + +1.0
286,440 + +0.5
286,440 + +2.1
286,440 + -1.0
286,440 + -0.4
286,440 + +1.7
286,441 - +0.6
286,441 - +0.3
286,668 + QEN71_RS01265 0.21 -0.2
286,668 + QEN71_RS01265 0.21 +1.8
286,668 + QEN71_RS01265 0.21 -0.7
286,669 - QEN71_RS01265 0.21 +0.4
286,669 - QEN71_RS01265 0.21 +0.9
286,669 - QEN71_RS01265 0.21 +0.1
286,669 - QEN71_RS01265 0.21 +0.3
286,715 + QEN71_RS01265 0.25 -1.2
286,715 + QEN71_RS01265 0.25 +0.6
286,715 + QEN71_RS01265 0.25 -0.3
286,715 + QEN71_RS01265 0.25 +0.6
286,715 + QEN71_RS01265 0.25 -0.6
286,716 - QEN71_RS01265 0.25 +2.0
286,716 - QEN71_RS01265 0.25 -0.9
286,716 - QEN71_RS01265 0.25 +0.4
286,716 - QEN71_RS01265 0.25 -0.1
286,768 + QEN71_RS01265 0.29 +0.6
286,768 + QEN71_RS01265 0.29 +2.3
286,768 + QEN71_RS01265 0.29 +0.9
286,768 + QEN71_RS01265 0.29 +0.3
286,769 - QEN71_RS01265 0.29 +0.3
286,769 - QEN71_RS01265 0.29 +2.0
286,769 - QEN71_RS01265 0.29 +0.4
286,769 - QEN71_RS01265 0.29 +0.5
286,769 - QEN71_RS01265 0.29 +0.4
286,769 - QEN71_RS01265 0.29 +0.4
286,769 - QEN71_RS01265 0.29 -0.4
286,769 - QEN71_RS01265 0.29 +0.2
286,830 + QEN71_RS01265 0.35 +0.3
286,830 + QEN71_RS01265 0.35 -1.0
286,830 + QEN71_RS01265 0.35 -0.4
286,830 + QEN71_RS01265 0.35 +0.9
286,831 - QEN71_RS01265 0.35 +1.0
286,831 - QEN71_RS01265 0.35 +0.6
286,831 - QEN71_RS01265 0.35 +1.8
286,831 - QEN71_RS01265 0.35 +2.0
286,831 - QEN71_RS01265 0.35 -0.1
286,887 - QEN71_RS01265 0.40 -0.1
286,887 - QEN71_RS01265 0.40 +0.2
286,887 - QEN71_RS01265 0.40 +0.4
286,929 + QEN71_RS01265 0.43 +1.7
286,929 + QEN71_RS01265 0.43 +1.2
286,929 + QEN71_RS01265 0.43 +1.0
286,929 + QEN71_RS01265 0.43 +0.2
286,929 + QEN71_RS01265 0.43 +0.3
286,929 + QEN71_RS01265 0.43 +0.0
286,929 + QEN71_RS01265 0.43 -1.5
286,929 + QEN71_RS01265 0.43 +2.2
286,929 + QEN71_RS01265 0.43 +1.6
286,929 + QEN71_RS01265 0.43 +0.8
286,929 + QEN71_RS01265 0.43 +0.5
286,929 + QEN71_RS01265 0.43 +1.0
286,930 - QEN71_RS01265 0.44 +0.2
286,930 - QEN71_RS01265 0.44 +1.0
286,930 - QEN71_RS01265 0.44 +1.8
286,930 - QEN71_RS01265 0.44 -0.5
286,930 - QEN71_RS01265 0.44 +0.3
286,930 - QEN71_RS01265 0.44 -0.8
286,930 - QEN71_RS01265 0.44 -0.0
286,930 - QEN71_RS01265 0.44 +0.1
286,930 - QEN71_RS01265 0.44 -0.0
286,930 - QEN71_RS01265 0.44 +1.6
286,930 - QEN71_RS01265 0.44 -0.0
286,931 + QEN71_RS01265 0.44 +0.3
286,931 + QEN71_RS01265 0.44 -0.0
286,931 + QEN71_RS01265 0.44 +1.0
286,932 - QEN71_RS01265 0.44 +0.6
286,932 - QEN71_RS01265 0.44 -0.1
286,998 + QEN71_RS01265 0.49 +0.7
286,998 + QEN71_RS01265 0.49 +0.2
286,998 + QEN71_RS01265 0.49 +0.3
286,998 + QEN71_RS01265 0.49 +0.8
286,998 + QEN71_RS01265 0.49 +0.0
286,998 + QEN71_RS01265 0.49 -0.9
286,998 + QEN71_RS01265 0.49 +0.4
286,998 + QEN71_RS01265 0.49 +0.4
286,998 + QEN71_RS01265 0.49 -0.3
286,998 + QEN71_RS01265 0.49 +0.1
286,998 + QEN71_RS01265 0.49 +2.7
286,998 + QEN71_RS01265 0.49 -0.3
286,998 + QEN71_RS01265 0.49 -0.9
286,998 + QEN71_RS01265 0.49 +1.4
286,999 - QEN71_RS01265 0.50 +1.0
286,999 - QEN71_RS01265 0.50 +1.1
286,999 - QEN71_RS01265 0.50 +0.5
286,999 - QEN71_RS01265 0.50 +0.0
286,999 - QEN71_RS01265 0.50 +0.1
286,999 - QEN71_RS01265 0.50 -0.8
286,999 - QEN71_RS01265 0.50 +1.2
286,999 - QEN71_RS01265 0.50 +0.4
286,999 - QEN71_RS01265 0.50 +1.3
286,999 - QEN71_RS01265 0.50 -0.3
286,999 - QEN71_RS01265 0.50 +0.1
287,051 + QEN71_RS01265 0.54 +0.6
287,051 + QEN71_RS01265 0.54 +1.6
287,052 - QEN71_RS01265 0.54 -1.5
287,060 + QEN71_RS01265 0.55 -0.3
287,060 + QEN71_RS01265 0.55 -0.2
287,060 + QEN71_RS01265 0.55 +1.7
287,060 + QEN71_RS01265 0.55 +1.4
287,060 + QEN71_RS01265 0.55 +0.4
287,060 + QEN71_RS01265 0.55 +1.5
287,060 + QEN71_RS01265 0.55 +2.0
287,061 - QEN71_RS01265 0.55 +0.0
287,061 - QEN71_RS01265 0.55 -0.0
287,061 - QEN71_RS01265 0.55 +0.9
287,334 + QEN71_RS01265 0.79 -0.1
287,334 + QEN71_RS01265 0.79 +0.8
287,334 + QEN71_RS01265 0.79 +0.2
287,334 + QEN71_RS01265 0.79 -0.9
287,334 + QEN71_RS01265 0.79 -0.4
287,334 + QEN71_RS01265 0.79 -0.0
287,334 + QEN71_RS01265 0.79 +0.3
287,334 + QEN71_RS01265 0.79 +0.3
287,335 - QEN71_RS01265 0.79 +0.4
287,596 - +1.4
287,924 - QEN71_RS01270 0.40 +0.3
287,924 - QEN71_RS01270 0.40 +0.9
287,924 - QEN71_RS01270 0.40 +0.9
287,924 - QEN71_RS01270 0.40 -0.2
288,338 + QEN71_RS01270 0.86 +0.0
288,338 + QEN71_RS01270 0.86 -1.4
288,339 - QEN71_RS01270 0.86 +0.3
288,339 - QEN71_RS01270 0.86 -0.3
288,339 - QEN71_RS01270 0.86 +0.5
288,487 + -0.3
288,487 + +0.8
288,487 + -0.4
288,488 - -0.7
288,488 - +0.5

Or see this region's nucleotide sequence