Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS44075

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS44070 and QEN71_RS44075 are separated by 4 nucleotidesQEN71_RS44075 and QEN71_RS44080 overlap by 14 nucleotides QEN71_RS44070: QEN71_RS44070 - ATPase, T2SS/T4P/T4SS family, at 287,433 to 289,844 _RS44070 QEN71_RS44075: QEN71_RS44075 - hypothetical protein, at 289,849 to 290,433 _RS44075 QEN71_RS44080: QEN71_RS44080 - hypothetical protein, at 290,420 to 291,697 _RS44080 Position (kb) 289 290 291Strain fitness (log2 ratio) -2 -1 0 1 2at 288.975 kb on + strand, within QEN71_RS44070at 288.976 kb on - strand, within QEN71_RS44070at 289.206 kb on - strand, within QEN71_RS44070at 289.469 kb on - strand, within QEN71_RS44070at 289.551 kb on + strand, within QEN71_RS44070at 289.600 kb on - strand, within QEN71_RS44070at 289.771 kb on - strandat 289.826 kb on + strandat 289.884 kb on + strandat 289.940 kb on - strand, within QEN71_RS44075at 289.940 kb on - strand, within QEN71_RS44075at 289.970 kb on - strand, within QEN71_RS44075at 290.075 kb on + strand, within QEN71_RS44075at 290.090 kb on + strand, within QEN71_RS44075at 290.118 kb on + strand, within QEN71_RS44075at 290.118 kb on + strand, within QEN71_RS44075at 290.119 kb on - strand, within QEN71_RS44075at 290.119 kb on - strand, within QEN71_RS44075at 290.119 kb on - strand, within QEN71_RS44075at 290.126 kb on + strand, within QEN71_RS44075at 290.126 kb on + strand, within QEN71_RS44075at 290.127 kb on - strand, within QEN71_RS44075at 290.127 kb on - strand, within QEN71_RS44075at 290.127 kb on - strand, within QEN71_RS44075at 290.248 kb on + strand, within QEN71_RS44075at 290.429 kb on + strandat 290.430 kb on - strandat 290.433 kb on + strandat 290.433 kb on + strandat 290.433 kb on + strandat 290.433 kb on + strandat 290.433 kb on + strandat 290.433 kb on + strandat 290.434 kb on - strandat 290.434 kb on - strandat 290.434 kb on - strandat 290.434 kb on - strandat 290.434 kb on - strandat 290.434 kb on - strandat 290.436 kb on + strandat 290.436 kb on + strandat 290.436 kb on + strandat 290.436 kb on + strandat 290.436 kb on + strandat 290.436 kb on + strandat 290.437 kb on - strandat 290.437 kb on - strandat 290.437 kb on - strandat 290.437 kb on - strandat 290.437 kb on - strandat 290.548 kb on + strand, within QEN71_RS44080at 290.548 kb on + strand, within QEN71_RS44080at 290.548 kb on + strand, within QEN71_RS44080at 290.548 kb on + strand, within QEN71_RS44080at 290.548 kb on + strand, within QEN71_RS44080at 290.548 kb on + strand, within QEN71_RS44080at 290.549 kb on - strand, within QEN71_RS44080at 290.549 kb on - strand, within QEN71_RS44080at 290.549 kb on - strand, within QEN71_RS44080at 290.549 kb on - strand, within QEN71_RS44080at 290.549 kb on - strand, within QEN71_RS44080at 290.549 kb on - strand, within QEN71_RS44080at 290.549 kb on - strand, within QEN71_RS44080at 290.549 kb on - strand, within QEN71_RS44080at 290.549 kb on - strand, within QEN71_RS44080at 290.549 kb on - strand, within QEN71_RS44080at 290.550 kb on + strand, within QEN71_RS44080at 290.550 kb on + strand, within QEN71_RS44080at 290.550 kb on + strand, within QEN71_RS44080at 290.551 kb on - strand, within QEN71_RS44080at 290.551 kb on - strand, within QEN71_RS44080at 290.573 kb on + strand, within QEN71_RS44080at 290.573 kb on + strand, within QEN71_RS44080at 290.573 kb on + strand, within QEN71_RS44080at 290.574 kb on - strand, within QEN71_RS44080at 290.655 kb on + strand, within QEN71_RS44080at 290.656 kb on - strand, within QEN71_RS44080at 290.828 kb on + strand, within QEN71_RS44080at 290.828 kb on + strand, within QEN71_RS44080at 290.829 kb on - strand, within QEN71_RS44080at 290.829 kb on - strand, within QEN71_RS44080at 290.929 kb on + strand, within QEN71_RS44080at 290.929 kb on + strand, within QEN71_RS44080at 290.929 kb on + strand, within QEN71_RS44080at 290.930 kb on - strand, within QEN71_RS44080at 291.066 kb on + strand, within QEN71_RS44080at 291.067 kb on - strand, within QEN71_RS44080at 291.067 kb on - strand, within QEN71_RS44080at 291.067 kb on - strand, within QEN71_RS44080at 291.103 kb on + strand, within QEN71_RS44080at 291.104 kb on - strand, within QEN71_RS44080at 291.104 kb on - strand, within QEN71_RS44080at 291.104 kb on - strand, within QEN71_RS44080at 291.104 kb on - strand, within QEN71_RS44080at 291.104 kb on - strand, within QEN71_RS44080at 291.105 kb on + strand, within QEN71_RS44080at 291.105 kb on + strand, within QEN71_RS44080at 291.105 kb on + strand, within QEN71_RS44080at 291.105 kb on + strand, within QEN71_RS44080at 291.106 kb on - strand, within QEN71_RS44080at 291.106 kb on - strand, within QEN71_RS44080at 291.106 kb on - strand, within QEN71_RS44080at 291.106 kb on - strand, within QEN71_RS44080at 291.106 kb on - strand, within QEN71_RS44080at 291.148 kb on + strand, within QEN71_RS44080at 291.425 kb on + strand, within QEN71_RS44080

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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288,975 + QEN71_RS44070 0.64 -0.3
288,976 - QEN71_RS44070 0.64 +0.2
289,206 - QEN71_RS44070 0.74 -0.2
289,469 - QEN71_RS44070 0.84 +0.6
289,551 + QEN71_RS44070 0.88 -1.0
289,600 - QEN71_RS44070 0.90 -0.0
289,771 - +1.2
289,826 + +0.7
289,884 + +0.9
289,940 - QEN71_RS44075 0.16 -0.1
289,940 - QEN71_RS44075 0.16 +0.2
289,970 - QEN71_RS44075 0.21 -0.4
290,075 + QEN71_RS44075 0.39 +0.1
290,090 + QEN71_RS44075 0.41 -0.2
290,118 + QEN71_RS44075 0.46 -0.5
290,118 + QEN71_RS44075 0.46 +0.1
290,119 - QEN71_RS44075 0.46 -1.6
290,119 - QEN71_RS44075 0.46 -0.7
290,119 - QEN71_RS44075 0.46 -0.8
290,126 + QEN71_RS44075 0.47 -0.4
290,126 + QEN71_RS44075 0.47 -0.1
290,127 - QEN71_RS44075 0.48 -0.9
290,127 - QEN71_RS44075 0.48 -0.2
290,127 - QEN71_RS44075 0.48 -0.9
290,248 + QEN71_RS44075 0.68 +0.0
290,429 + +0.9
290,430 - -1.6
290,433 + -0.1
290,433 + +0.9
290,433 + +1.2
290,433 + -0.4
290,433 + -0.7
290,433 + +0.4
290,434 - +2.1
290,434 - -0.3
290,434 - +0.9
290,434 - +0.8
290,434 - +0.2
290,434 - -1.3
290,436 + -0.1
290,436 + -0.5
290,436 + -1.3
290,436 + +0.2
290,436 + +0.1
290,436 + +0.2
290,437 - -2.3
290,437 - -1.3
290,437 - +1.4
290,437 - +0.2
290,437 - +0.4
290,548 + QEN71_RS44080 0.10 +0.2
290,548 + QEN71_RS44080 0.10 -1.9
290,548 + QEN71_RS44080 0.10 +0.2
290,548 + QEN71_RS44080 0.10 -0.4
290,548 + QEN71_RS44080 0.10 +0.2
290,548 + QEN71_RS44080 0.10 -0.3
290,549 - QEN71_RS44080 0.10 +1.1
290,549 - QEN71_RS44080 0.10 +1.6
290,549 - QEN71_RS44080 0.10 -1.3
290,549 - QEN71_RS44080 0.10 +1.9
290,549 - QEN71_RS44080 0.10 +1.1
290,549 - QEN71_RS44080 0.10 -1.0
290,549 - QEN71_RS44080 0.10 -0.5
290,549 - QEN71_RS44080 0.10 -0.8
290,549 - QEN71_RS44080 0.10 -0.3
290,549 - QEN71_RS44080 0.10 -0.1
290,550 + QEN71_RS44080 0.10 -2.6
290,550 + QEN71_RS44080 0.10 +0.6
290,550 + QEN71_RS44080 0.10 -0.7
290,551 - QEN71_RS44080 0.10 +0.4
290,551 - QEN71_RS44080 0.10 +0.2
290,573 + QEN71_RS44080 0.12 -0.1
290,573 + QEN71_RS44080 0.12 -1.4
290,573 + QEN71_RS44080 0.12 -0.7
290,574 - QEN71_RS44080 0.12 -0.2
290,655 + QEN71_RS44080 0.18 -0.6
290,656 - QEN71_RS44080 0.18 -0.6
290,828 + QEN71_RS44080 0.32 -0.5
290,828 + QEN71_RS44080 0.32 +0.7
290,829 - QEN71_RS44080 0.32 +1.2
290,829 - QEN71_RS44080 0.32 -0.4
290,929 + QEN71_RS44080 0.40 +0.1
290,929 + QEN71_RS44080 0.40 +0.3
290,929 + QEN71_RS44080 0.40 +0.6
290,930 - QEN71_RS44080 0.40 +1.9
291,066 + QEN71_RS44080 0.51 +0.3
291,067 - QEN71_RS44080 0.51 -0.7
291,067 - QEN71_RS44080 0.51 -0.7
291,067 - QEN71_RS44080 0.51 -1.3
291,103 + QEN71_RS44080 0.53 +0.3
291,104 - QEN71_RS44080 0.54 -0.5
291,104 - QEN71_RS44080 0.54 -0.4
291,104 - QEN71_RS44080 0.54 +0.0
291,104 - QEN71_RS44080 0.54 -0.2
291,104 - QEN71_RS44080 0.54 -0.6
291,105 + QEN71_RS44080 0.54 +0.9
291,105 + QEN71_RS44080 0.54 -0.8
291,105 + QEN71_RS44080 0.54 +0.4
291,105 + QEN71_RS44080 0.54 -0.1
291,106 - QEN71_RS44080 0.54 +2.1
291,106 - QEN71_RS44080 0.54 +0.0
291,106 - QEN71_RS44080 0.54 -0.1
291,106 - QEN71_RS44080 0.54 -1.4
291,106 - QEN71_RS44080 0.54 +0.1
291,148 + QEN71_RS44080 0.57 +0.6
291,425 + QEN71_RS44080 0.79 +0.6

Or see this region's nucleotide sequence