Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS36870

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS36855 and QEN71_RS36860 are separated by 82 nucleotidesQEN71_RS36860 and QEN71_RS36865 are separated by 85 nucleotidesQEN71_RS36865 and QEN71_RS36870 are separated by 59 nucleotidesQEN71_RS36870 and QEN71_RS36875 are separated by 225 nucleotides QEN71_RS36855: QEN71_RS36855 - type III secretion protein, at 1,646,031 to 1,646,273 _RS36855 QEN71_RS36860: QEN71_RS36860 - hypothetical protein, at 1,646,356 to 1,646,577 _RS36860 QEN71_RS36865: QEN71_RS36865 - CesT family type III secretion system chaperone, at 1,646,663 to 1,647,118 _RS36865 QEN71_RS36870: QEN71_RS36870 - MEKHLA domain-containing protein, at 1,647,178 to 1,647,636 _RS36870 QEN71_RS36875: QEN71_RS36875 - nitrite/sulfite reductase, at 1,647,862 to 1,649,652 _RS36875 Position (kb) 1647 1648Strain fitness (log2 ratio) -2 -1 0 1 2at 1646.208 kb on + strand, within QEN71_RS36855at 1646.209 kb on - strand, within QEN71_RS36855at 1646.305 kb on + strandat 1646.575 kb on + strandat 1646.646 kb on + strandat 1647.146 kb on - strandat 1647.490 kb on + strand, within QEN71_RS36870at 1647.759 kb on + strandat 1647.760 kb on - strandat 1647.760 kb on - strandat 1647.857 kb on + strandat 1647.866 kb on - strandat 1647.872 kb on - strandat 1647.872 kb on - strandat 1647.872 kb on - strandat 1648.093 kb on + strand, within QEN71_RS36875at 1648.117 kb on + strand, within QEN71_RS36875at 1648.615 kb on + strand, within QEN71_RS36875at 1648.616 kb on - strand, within QEN71_RS36875

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,646,208 + QEN71_RS36855 0.73 -0.2
1,646,209 - QEN71_RS36855 0.73 -0.5
1,646,305 + +0.6
1,646,575 + +0.2
1,646,646 + +0.4
1,647,146 - -0.3
1,647,490 + QEN71_RS36870 0.68 -0.2
1,647,759 + +0.4
1,647,760 - +0.3
1,647,760 - +0.0
1,647,857 + -1.0
1,647,866 - -0.8
1,647,872 - -2.3
1,647,872 - -0.2
1,647,872 - +0.4
1,648,093 + QEN71_RS36875 0.13 -0.3
1,648,117 + QEN71_RS36875 0.14 +0.7
1,648,615 + QEN71_RS36875 0.42 +2.0
1,648,616 - QEN71_RS36875 0.42 +0.3

Or see this region's nucleotide sequence