Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS29380

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS29375 and QEN71_RS29380 overlap by 1 nucleotidesQEN71_RS29380 and QEN71_RS29385 are separated by 138 nucleotides QEN71_RS29375: QEN71_RS29375 - branched-chain amino acid ABC transporter permease, at 6,522,078 to 6,523,049 _RS29375 QEN71_RS29380: QEN71_RS29380 - branched-chain amino acid ABC transporter permease, at 6,523,049 to 6,523,933 _RS29380 QEN71_RS29385: QEN71_RS29385 - ABC transporter substrate-binding protein, at 6,524,072 to 6,525,286 _RS29385 Position (kb) 6523 6524Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6522.075 kb on + strandat 6522.316 kb on - strand, within QEN71_RS29375at 6522.316 kb on - strand, within QEN71_RS29375at 6522.316 kb on - strand, within QEN71_RS29375at 6522.355 kb on + strand, within QEN71_RS29375at 6522.395 kb on + strand, within QEN71_RS29375at 6522.395 kb on + strand, within QEN71_RS29375at 6522.395 kb on + strand, within QEN71_RS29375at 6522.395 kb on + strand, within QEN71_RS29375at 6522.396 kb on - strand, within QEN71_RS29375at 6522.461 kb on + strand, within QEN71_RS29375at 6522.462 kb on - strand, within QEN71_RS29375at 6522.462 kb on - strand, within QEN71_RS29375at 6522.462 kb on - strand, within QEN71_RS29375at 6522.462 kb on - strand, within QEN71_RS29375at 6522.462 kb on - strand, within QEN71_RS29375at 6522.462 kb on - strand, within QEN71_RS29375at 6522.467 kb on - strand, within QEN71_RS29375at 6522.467 kb on - strand, within QEN71_RS29375at 6522.589 kb on + strand, within QEN71_RS29375at 6522.589 kb on + strand, within QEN71_RS29375at 6522.590 kb on - strand, within QEN71_RS29375at 6522.697 kb on + strand, within QEN71_RS29375at 6522.698 kb on - strand, within QEN71_RS29375at 6522.698 kb on - strand, within QEN71_RS29375at 6522.698 kb on - strand, within QEN71_RS29375at 6522.736 kb on + strand, within QEN71_RS29375at 6522.736 kb on + strand, within QEN71_RS29375at 6522.736 kb on + strand, within QEN71_RS29375at 6522.736 kb on + strand, within QEN71_RS29375at 6522.736 kb on + strand, within QEN71_RS29375at 6522.737 kb on - strand, within QEN71_RS29375at 6522.737 kb on - strand, within QEN71_RS29375at 6522.737 kb on - strand, within QEN71_RS29375at 6522.737 kb on - strand, within QEN71_RS29375at 6522.737 kb on - strand, within QEN71_RS29375at 6522.737 kb on - strand, within QEN71_RS29375at 6522.862 kb on + strand, within QEN71_RS29375at 6522.862 kb on + strand, within QEN71_RS29375at 6522.862 kb on + strand, within QEN71_RS29375at 6522.863 kb on - strand, within QEN71_RS29375at 6522.863 kb on - strand, within QEN71_RS29375at 6522.863 kb on - strand, within QEN71_RS29375at 6522.911 kb on + strand, within QEN71_RS29375at 6522.914 kb on - strand, within QEN71_RS29375at 6522.982 kb on + strandat 6522.983 kb on - strandat 6523.030 kb on + strandat 6523.030 kb on + strandat 6523.030 kb on + strandat 6523.030 kb on + strandat 6523.030 kb on + strandat 6523.031 kb on - strandat 6523.031 kb on - strandat 6523.031 kb on - strandat 6523.031 kb on - strandat 6523.031 kb on - strandat 6523.031 kb on - strandat 6523.138 kb on - strand, within QEN71_RS29380at 6523.332 kb on + strand, within QEN71_RS29380at 6523.332 kb on + strand, within QEN71_RS29380at 6523.333 kb on - strand, within QEN71_RS29380at 6523.333 kb on - strand, within QEN71_RS29380at 6523.333 kb on - strand, within QEN71_RS29380at 6523.410 kb on + strand, within QEN71_RS29380at 6523.410 kb on + strand, within QEN71_RS29380at 6523.551 kb on + strand, within QEN71_RS29380at 6523.551 kb on + strand, within QEN71_RS29380at 6523.552 kb on - strand, within QEN71_RS29380at 6523.552 kb on - strand, within QEN71_RS29380at 6523.552 kb on - strand, within QEN71_RS29380at 6523.552 kb on - strand, within QEN71_RS29380at 6523.552 kb on - strand, within QEN71_RS29380at 6523.552 kb on - strand, within QEN71_RS29380at 6523.552 kb on - strand, within QEN71_RS29380at 6523.572 kb on + strand, within QEN71_RS29380at 6523.632 kb on + strand, within QEN71_RS29380at 6523.633 kb on - strand, within QEN71_RS29380at 6523.633 kb on - strand, within QEN71_RS29380at 6523.633 kb on - strand, within QEN71_RS29380at 6523.650 kb on + strand, within QEN71_RS29380at 6523.650 kb on + strand, within QEN71_RS29380at 6523.651 kb on - strand, within QEN71_RS29380at 6523.732 kb on - strand, within QEN71_RS29380at 6523.814 kb on - strand, within QEN71_RS29380at 6523.860 kb on + strandat 6523.861 kb on - strandat 6523.861 kb on - strandat 6523.861 kb on - strandat 6523.928 kb on - strandat 6524.031 kb on + strandat 6524.031 kb on + strandat 6524.031 kb on + strandat 6524.031 kb on + strandat 6524.031 kb on + strandat 6524.031 kb on + strandat 6524.032 kb on - strandat 6524.032 kb on - strandat 6524.032 kb on - strandat 6524.032 kb on - strandat 6524.032 kb on - strandat 6524.032 kb on - strandat 6524.035 kb on + strandat 6524.035 kb on + strandat 6524.035 kb on + strandat 6524.036 kb on - strandat 6524.036 kb on - strandat 6524.036 kb on - strandat 6524.043 kb on - strandat 6524.043 kb on - strandat 6524.073 kb on + strandat 6524.073 kb on + strandat 6524.074 kb on - strandat 6524.148 kb on + strandat 6524.148 kb on + strandat 6524.148 kb on + strandat 6524.148 kb on + strandat 6524.148 kb on + strandat 6524.149 kb on - strandat 6524.149 kb on - strandat 6524.149 kb on - strandat 6524.151 kb on + strandat 6524.151 kb on + strandat 6524.151 kb on + strandat 6524.152 kb on - strandat 6524.152 kb on - strandat 6524.152 kb on - strandat 6524.152 kb on - strandat 6524.152 kb on - strandat 6524.152 kb on - strandat 6524.152 kb on - strandat 6524.199 kb on + strand, within QEN71_RS29385at 6524.199 kb on + strand, within QEN71_RS29385at 6524.199 kb on + strand, within QEN71_RS29385at 6524.199 kb on + strand, within QEN71_RS29385at 6524.199 kb on + strand, within QEN71_RS29385at 6524.199 kb on + strand, within QEN71_RS29385at 6524.199 kb on + strand, within QEN71_RS29385at 6524.200 kb on - strand, within QEN71_RS29385at 6524.200 kb on - strand, within QEN71_RS29385at 6524.200 kb on - strand, within QEN71_RS29385at 6524.200 kb on - strand, within QEN71_RS29385at 6524.200 kb on - strand, within QEN71_RS29385at 6524.200 kb on - strand, within QEN71_RS29385at 6524.200 kb on - strand, within QEN71_RS29385at 6524.200 kb on - strand, within QEN71_RS29385at 6524.200 kb on - strand, within QEN71_RS29385at 6524.200 kb on - strand, within QEN71_RS29385at 6524.235 kb on + strand, within QEN71_RS29385at 6524.235 kb on + strand, within QEN71_RS29385at 6524.235 kb on + strand, within QEN71_RS29385at 6524.236 kb on - strand, within QEN71_RS29385at 6524.236 kb on - strand, within QEN71_RS29385at 6524.236 kb on - strand, within QEN71_RS29385at 6524.236 kb on - strand, within QEN71_RS29385at 6524.236 kb on - strand, within QEN71_RS29385at 6524.247 kb on + strand, within QEN71_RS29385at 6524.247 kb on + strand, within QEN71_RS29385at 6524.247 kb on + strand, within QEN71_RS29385at 6524.247 kb on + strand, within QEN71_RS29385at 6524.247 kb on + strand, within QEN71_RS29385at 6524.247 kb on + strand, within QEN71_RS29385at 6524.248 kb on - strand, within QEN71_RS29385at 6524.248 kb on - strand, within QEN71_RS29385at 6524.331 kb on + strand, within QEN71_RS29385at 6524.331 kb on + strand, within QEN71_RS29385at 6524.332 kb on - strand, within QEN71_RS29385at 6524.332 kb on - strand, within QEN71_RS29385at 6524.332 kb on - strand, within QEN71_RS29385at 6524.397 kb on + strand, within QEN71_RS29385at 6524.397 kb on + strand, within QEN71_RS29385at 6524.398 kb on - strand, within QEN71_RS29385at 6524.398 kb on - strand, within QEN71_RS29385at 6524.769 kb on + strand, within QEN71_RS29385at 6524.769 kb on + strand, within QEN71_RS29385at 6524.769 kb on + strand, within QEN71_RS29385at 6524.769 kb on + strand, within QEN71_RS29385at 6524.769 kb on + strand, within QEN71_RS29385at 6524.769 kb on + strand, within QEN71_RS29385at 6524.770 kb on - strand, within QEN71_RS29385at 6524.770 kb on - strand, within QEN71_RS29385at 6524.770 kb on - strand, within QEN71_RS29385at 6524.770 kb on - strand, within QEN71_RS29385at 6524.770 kb on - strand, within QEN71_RS29385at 6524.770 kb on - strand, within QEN71_RS29385at 6524.835 kb on + strand, within QEN71_RS29385at 6524.836 kb on - strand, within QEN71_RS29385at 6524.836 kb on - strand, within QEN71_RS29385at 6524.836 kb on - strand, within QEN71_RS29385at 6524.836 kb on - strand, within QEN71_RS29385at 6524.841 kb on + strand, within QEN71_RS29385at 6524.841 kb on + strand, within QEN71_RS29385at 6524.842 kb on - strand, within QEN71_RS29385at 6524.842 kb on - strand, within QEN71_RS29385at 6524.853 kb on + strand, within QEN71_RS29385at 6524.853 kb on + strand, within QEN71_RS29385at 6524.854 kb on - strand, within QEN71_RS29385at 6524.881 kb on + strand, within QEN71_RS29385at 6524.907 kb on + strand, within QEN71_RS29385at 6524.907 kb on + strand, within QEN71_RS29385at 6524.907 kb on + strand, within QEN71_RS29385at 6524.907 kb on + strand, within QEN71_RS29385at 6524.907 kb on + strand, within QEN71_RS29385at 6524.907 kb on + strand, within QEN71_RS29385at 6524.907 kb on + strand, within QEN71_RS29385at 6524.907 kb on + strand, within QEN71_RS29385at 6524.908 kb on - strand, within QEN71_RS29385at 6524.908 kb on - strand, within QEN71_RS29385at 6524.908 kb on - strand, within QEN71_RS29385at 6524.908 kb on - strand, within QEN71_RS29385at 6524.908 kb on - strand, within QEN71_RS29385at 6524.908 kb on - strand, within QEN71_RS29385at 6524.908 kb on - strand, within QEN71_RS29385at 6524.908 kb on - strand, within QEN71_RS29385

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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6,522,075 + -0.9
6,522,316 - QEN71_RS29375 0.24 -0.5
6,522,316 - QEN71_RS29375 0.24 -1.9
6,522,316 - QEN71_RS29375 0.24 -0.4
6,522,355 + QEN71_RS29375 0.28 -0.5
6,522,395 + QEN71_RS29375 0.33 -0.4
6,522,395 + QEN71_RS29375 0.33 -0.3
6,522,395 + QEN71_RS29375 0.33 +0.5
6,522,395 + QEN71_RS29375 0.33 -0.4
6,522,396 - QEN71_RS29375 0.33 +1.5
6,522,461 + QEN71_RS29375 0.39 -0.1
6,522,462 - QEN71_RS29375 0.40 +2.2
6,522,462 - QEN71_RS29375 0.40 -0.4
6,522,462 - QEN71_RS29375 0.40 +0.5
6,522,462 - QEN71_RS29375 0.40 +2.1
6,522,462 - QEN71_RS29375 0.40 -1.4
6,522,462 - QEN71_RS29375 0.40 +0.5
6,522,467 - QEN71_RS29375 0.40 -0.8
6,522,467 - QEN71_RS29375 0.40 +0.3
6,522,589 + QEN71_RS29375 0.53 -0.1
6,522,589 + QEN71_RS29375 0.53 +0.3
6,522,590 - QEN71_RS29375 0.53 +0.2
6,522,697 + QEN71_RS29375 0.64 -0.1
6,522,698 - QEN71_RS29375 0.64 -0.5
6,522,698 - QEN71_RS29375 0.64 +0.5
6,522,698 - QEN71_RS29375 0.64 -0.1
6,522,736 + QEN71_RS29375 0.68 -0.6
6,522,736 + QEN71_RS29375 0.68 -1.4
6,522,736 + QEN71_RS29375 0.68 +0.1
6,522,736 + QEN71_RS29375 0.68 +1.5
6,522,736 + QEN71_RS29375 0.68 -0.8
6,522,737 - QEN71_RS29375 0.68 +0.7
6,522,737 - QEN71_RS29375 0.68 -0.1
6,522,737 - QEN71_RS29375 0.68 +0.1
6,522,737 - QEN71_RS29375 0.68 -0.2
6,522,737 - QEN71_RS29375 0.68 -0.5
6,522,737 - QEN71_RS29375 0.68 +1.0
6,522,862 + QEN71_RS29375 0.81 -0.9
6,522,862 + QEN71_RS29375 0.81 +0.4
6,522,862 + QEN71_RS29375 0.81 +1.5
6,522,863 - QEN71_RS29375 0.81 -0.1
6,522,863 - QEN71_RS29375 0.81 +0.2
6,522,863 - QEN71_RS29375 0.81 +1.2
6,522,911 + QEN71_RS29375 0.86 +0.0
6,522,914 - QEN71_RS29375 0.86 +0.7
6,522,982 + +1.7
6,522,983 - +1.0
6,523,030 + -0.7
6,523,030 + -0.3
6,523,030 + -0.6
6,523,030 + -0.2
6,523,030 + -2.3
6,523,031 - -0.5
6,523,031 - +0.7
6,523,031 - +0.3
6,523,031 - +0.6
6,523,031 - -0.3
6,523,031 - +0.0
6,523,138 - QEN71_RS29380 0.10 +0.2
6,523,332 + QEN71_RS29380 0.32 +0.4
6,523,332 + QEN71_RS29380 0.32 +1.0
6,523,333 - QEN71_RS29380 0.32 +0.8
6,523,333 - QEN71_RS29380 0.32 -0.1
6,523,333 - QEN71_RS29380 0.32 +0.1
6,523,410 + QEN71_RS29380 0.41 -0.5
6,523,410 + QEN71_RS29380 0.41 +0.4
6,523,551 + QEN71_RS29380 0.57 -2.0
6,523,551 + QEN71_RS29380 0.57 +0.8
6,523,552 - QEN71_RS29380 0.57 -1.3
6,523,552 - QEN71_RS29380 0.57 -2.1
6,523,552 - QEN71_RS29380 0.57 +1.3
6,523,552 - QEN71_RS29380 0.57 +1.7
6,523,552 - QEN71_RS29380 0.57 +2.9
6,523,552 - QEN71_RS29380 0.57 +0.4
6,523,552 - QEN71_RS29380 0.57 -0.8
6,523,572 + QEN71_RS29380 0.59 +1.4
6,523,632 + QEN71_RS29380 0.66 +0.1
6,523,633 - QEN71_RS29380 0.66 -0.9
6,523,633 - QEN71_RS29380 0.66 +0.2
6,523,633 - QEN71_RS29380 0.66 +1.0
6,523,650 + QEN71_RS29380 0.68 +0.1
6,523,650 + QEN71_RS29380 0.68 +0.9
6,523,651 - QEN71_RS29380 0.68 +0.4
6,523,732 - QEN71_RS29380 0.77 -1.3
6,523,814 - QEN71_RS29380 0.86 +0.4
6,523,860 + -1.1
6,523,861 - +0.3
6,523,861 - -0.0
6,523,861 - +1.6
6,523,928 - -0.1
6,524,031 + +2.3
6,524,031 + -1.3
6,524,031 + -1.1
6,524,031 + -0.7
6,524,031 + -0.7
6,524,031 + +1.9
6,524,032 - +0.9
6,524,032 - -0.0
6,524,032 - +0.6
6,524,032 - +0.6
6,524,032 - -1.3
6,524,032 - +0.3
6,524,035 + +0.0
6,524,035 + -0.4
6,524,035 + +0.5
6,524,036 - -0.1
6,524,036 - +0.5
6,524,036 - +0.4
6,524,043 - +0.6
6,524,043 - -0.0
6,524,073 + +0.3
6,524,073 + +0.1
6,524,074 - -1.5
6,524,148 + +0.6
6,524,148 + +0.1
6,524,148 + -0.3
6,524,148 + +0.1
6,524,148 + -1.0
6,524,149 - +0.5
6,524,149 - -0.4
6,524,149 - +0.1
6,524,151 + -0.5
6,524,151 + -0.7
6,524,151 + -0.8
6,524,152 - -2.0
6,524,152 - +0.9
6,524,152 - +0.8
6,524,152 - -0.0
6,524,152 - -0.1
6,524,152 - +0.1
6,524,152 - +0.3
6,524,199 + QEN71_RS29385 0.10 -0.5
6,524,199 + QEN71_RS29385 0.10 -0.3
6,524,199 + QEN71_RS29385 0.10 -0.4
6,524,199 + QEN71_RS29385 0.10 -0.8
6,524,199 + QEN71_RS29385 0.10 -0.4
6,524,199 + QEN71_RS29385 0.10 +0.1
6,524,199 + QEN71_RS29385 0.10 +0.6
6,524,200 - QEN71_RS29385 0.11 -0.1
6,524,200 - QEN71_RS29385 0.11 -0.9
6,524,200 - QEN71_RS29385 0.11 +0.1
6,524,200 - QEN71_RS29385 0.11 +0.3
6,524,200 - QEN71_RS29385 0.11 +0.6
6,524,200 - QEN71_RS29385 0.11 +1.3
6,524,200 - QEN71_RS29385 0.11 +0.3
6,524,200 - QEN71_RS29385 0.11 +0.5
6,524,200 - QEN71_RS29385 0.11 +0.8
6,524,200 - QEN71_RS29385 0.11 +1.3
6,524,235 + QEN71_RS29385 0.13 -0.3
6,524,235 + QEN71_RS29385 0.13 -0.4
6,524,235 + QEN71_RS29385 0.13 -1.0
6,524,236 - QEN71_RS29385 0.13 -0.1
6,524,236 - QEN71_RS29385 0.13 +1.2
6,524,236 - QEN71_RS29385 0.13 -0.4
6,524,236 - QEN71_RS29385 0.13 +0.6
6,524,236 - QEN71_RS29385 0.13 +1.9
6,524,247 + QEN71_RS29385 0.14 +0.7
6,524,247 + QEN71_RS29385 0.14 -0.4
6,524,247 + QEN71_RS29385 0.14 -0.5
6,524,247 + QEN71_RS29385 0.14 -0.8
6,524,247 + QEN71_RS29385 0.14 -0.7
6,524,247 + QEN71_RS29385 0.14 -0.5
6,524,248 - QEN71_RS29385 0.14 +0.3
6,524,248 - QEN71_RS29385 0.14 -2.2
6,524,331 + QEN71_RS29385 0.21 -0.9
6,524,331 + QEN71_RS29385 0.21 -0.1
6,524,332 - QEN71_RS29385 0.21 +0.2
6,524,332 - QEN71_RS29385 0.21 +0.9
6,524,332 - QEN71_RS29385 0.21 +0.3
6,524,397 + QEN71_RS29385 0.27 +0.1
6,524,397 + QEN71_RS29385 0.27 +0.3
6,524,398 - QEN71_RS29385 0.27 -0.3
6,524,398 - QEN71_RS29385 0.27 -0.8
6,524,769 + QEN71_RS29385 0.57 +0.6
6,524,769 + QEN71_RS29385 0.57 +1.5
6,524,769 + QEN71_RS29385 0.57 +0.4
6,524,769 + QEN71_RS29385 0.57 -1.4
6,524,769 + QEN71_RS29385 0.57 -0.8
6,524,769 + QEN71_RS29385 0.57 -0.1
6,524,770 - QEN71_RS29385 0.57 -0.3
6,524,770 - QEN71_RS29385 0.57 -0.3
6,524,770 - QEN71_RS29385 0.57 -0.4
6,524,770 - QEN71_RS29385 0.57 -0.7
6,524,770 - QEN71_RS29385 0.57 +0.2
6,524,770 - QEN71_RS29385 0.57 -0.0
6,524,835 + QEN71_RS29385 0.63 -1.1
6,524,836 - QEN71_RS29385 0.63 -1.8
6,524,836 - QEN71_RS29385 0.63 +0.3
6,524,836 - QEN71_RS29385 0.63 +0.3
6,524,836 - QEN71_RS29385 0.63 -0.8
6,524,841 + QEN71_RS29385 0.63 -0.0
6,524,841 + QEN71_RS29385 0.63 -0.3
6,524,842 - QEN71_RS29385 0.63 -0.2
6,524,842 - QEN71_RS29385 0.63 -0.1
6,524,853 + QEN71_RS29385 0.64 -0.5
6,524,853 + QEN71_RS29385 0.64 +0.5
6,524,854 - QEN71_RS29385 0.64 -1.1
6,524,881 + QEN71_RS29385 0.67 -0.4
6,524,907 + QEN71_RS29385 0.69 +0.6
6,524,907 + QEN71_RS29385 0.69 +0.5
6,524,907 + QEN71_RS29385 0.69 -0.4
6,524,907 + QEN71_RS29385 0.69 -0.9
6,524,907 + QEN71_RS29385 0.69 -0.4
6,524,907 + QEN71_RS29385 0.69 +0.6
6,524,907 + QEN71_RS29385 0.69 +2.1
6,524,907 + QEN71_RS29385 0.69 +0.9
6,524,908 - QEN71_RS29385 0.69 +1.2
6,524,908 - QEN71_RS29385 0.69 -0.3
6,524,908 - QEN71_RS29385 0.69 +0.1
6,524,908 - QEN71_RS29385 0.69 -0.5
6,524,908 - QEN71_RS29385 0.69 +0.1
6,524,908 - QEN71_RS29385 0.69 -0.6
6,524,908 - QEN71_RS29385 0.69 +0.7
6,524,908 - QEN71_RS29385 0.69 -0.7

Or see this region's nucleotide sequence